Wall clock time and date at job start Tue Mar 31 2020 19:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48501 * 109.46977 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47193 * 120.00236 * 3 2 1 6 6 H 1.48504 * 109.47141 * 240.00197 * 3 2 1 7 7 C 1.38811 * 120.00330 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00014 * 196.68601 * 7 2 1 9 9 N 1.36936 * 119.99752 * 16.68411 * 7 2 1 10 10 C 1.44466 * 118.50838 * 206.74194 * 9 7 2 11 11 C 1.54872 * 109.32327 * 268.93118 * 10 9 7 12 12 C 1.47689 * 109.68365 * 290.10344 * 11 10 9 13 13 O 1.42559 * 113.66130 * 60.80369 * 12 11 10 14 14 C 1.40525 * 113.54265 * 272.23851 * 13 12 11 15 15 H 1.09004 * 109.40713 * 335.17327 * 14 13 12 16 16 C 1.52996 * 109.40892 * 215.40978 * 14 13 12 17 17 N 1.46502 * 109.47102 * 65.00472 * 16 14 13 18 18 C 1.34773 * 120.00551 * 180.02562 * 17 16 14 19 19 O 1.21612 * 119.99558 * 0.02562 * 18 17 16 20 20 C 1.47400 * 120.00453 * 179.97438 * 18 17 16 21 21 C 1.47102 * 128.56190 * 0.02742 * 20 18 17 22 22 N 1.30012 * 105.32646 * 179.97438 * 21 20 18 23 23 O 1.20653 * 112.30564 * 359.97438 * 22 21 20 24 24 C 1.33493 * 113.15385 * 359.71640 * 23 22 21 25 25 C 1.50706 * 126.83139 * 180.31000 * 24 23 22 26 26 C 1.52997 * 117.49721 * 8.79387 * 25 24 23 27 27 C 1.52996 * 117.49917 * 300.17101 * 25 24 23 28 28 C 1.48174 * 118.51489 * 26.47228 * 9 7 2 29 29 H 0.97005 * 120.00586 * 0.02562 * 1 2 3 30 30 H 1.08994 * 109.50023 * 28.88684 * 10 9 7 31 31 H 1.09002 * 109.49178 * 148.95145 * 10 9 7 32 32 H 1.09001 * 109.43937 * 50.16979 * 11 10 9 33 33 H 1.09004 * 109.43533 * 170.04109 * 11 10 9 34 34 H 1.09003 * 108.64822 * 181.87923 * 12 11 10 35 35 H 1.08994 * 108.64533 * 299.85603 * 12 11 10 36 36 H 1.09001 * 109.47547 * 185.00290 * 16 14 13 37 37 H 1.09003 * 109.47473 * 305.00228 * 16 14 13 38 38 H 0.97006 * 119.99630 * 0.02562 * 17 16 14 39 39 H 1.08001 * 127.33528 * 0.02836 * 21 20 18 40 40 H 1.09000 * 115.54753 * 154.49897 * 25 24 23 41 41 H 1.09004 * 117.49627 * 359.97438 * 26 25 24 42 42 H 1.08999 * 117.50132 * 145.01577 * 26 25 24 43 43 H 1.08994 * 117.49988 * 214.97570 * 27 25 24 44 44 H 1.09005 * 117.49686 * 359.97438 * 27 25 24 45 45 H 1.09004 * 109.23394 * 259.08733 * 28 9 7 46 46 H 1.09003 * 109.23586 * 18.46063 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7465 -0.0006 5 1 3.1038 1.6965 1.2124 6 1 3.1038 1.6965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0562 -1.2219 0.2680 9 7 1.3688 -2.3629 -0.3415 10 6 1.8650 -3.6085 0.1964 11 6 2.9032 -4.2117 -0.7817 12 6 2.2209 -4.6796 -2.0051 13 8 1.5462 -3.6441 -2.7155 14 6 0.2279 -3.4304 -2.2783 15 1 -0.1537 -4.3423 -1.8189 16 6 -0.6508 -3.0598 -3.4747 17 7 -0.7267 -4.1967 -4.3956 18 6 -1.4508 -4.0995 -5.5281 19 8 -2.0408 -3.0678 -5.7858 20 6 -1.5267 -5.2431 -6.4549 21 6 -0.8949 -6.5659 -6.3327 22 7 -1.2596 -7.2204 -7.3952 23 8 -1.9714 -6.5644 -8.1154 24 6 -2.2108 -5.3393 -7.6421 25 6 -3.0595 -4.2725 -8.2846 26 6 -3.8889 -4.6707 -9.5071 27 6 -2.6508 -3.7881 -9.6771 28 6 0.1937 -2.2839 -1.2406 29 1 -0.4851 0.8400 -0.0004 30 1 2.3377 -3.4255 1.1613 31 1 1.0366 -4.3054 0.3235 32 1 3.6384 -3.4511 -1.0448 33 1 3.4068 -5.0518 -0.3034 34 1 2.9610 -5.1305 -2.6662 35 1 1.4923 -5.4414 -1.7280 36 1 -1.6522 -2.8074 -3.1258 37 1 -0.2191 -2.2023 -3.9909 38 1 -0.2558 -5.0195 -4.1901 39 1 -0.2634 -6.9186 -5.5307 40 1 -3.4885 -3.5387 -7.6022 41 1 -3.8204 -5.7041 -9.8468 42 1 -4.8639 -4.1989 -9.6291 43 1 -2.8112 -2.7357 -9.9111 44 1 -1.7678 -4.2407 -10.1284 45 1 -0.7179 -2.3586 -0.6476 46 1 0.2043 -1.3268 -1.7623 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073841117.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:55 Heat of formation + Delta-G solvation = 37.136985 kcal Electronic energy + Delta-G solvation = -29236.681730 eV Core-core repulsion = 25131.838376 eV Total energy + Delta-G solvation = -4104.843354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.16709 -39.67679 -38.70583 -37.66180 -35.20894 -34.67942 -33.96881 -32.55644 -31.82682 -31.08214 -28.86840 -26.16557 -25.40034 -24.51321 -24.18517 -22.78106 -22.55544 -21.19822 -21.05129 -20.36932 -19.69105 -18.10854 -17.93279 -17.06919 -16.82070 -16.30892 -16.03991 -15.67758 -15.15088 -15.09624 -14.72545 -14.59853 -14.12179 -14.00872 -13.61901 -13.33930 -12.94714 -12.66012 -12.56440 -12.43227 -12.32076 -11.96918 -11.86206 -11.83362 -11.47350 -11.17537 -10.87805 -10.82395 -10.74548 -10.64889 -10.62666 -10.26497 -10.15568 -10.04194 -9.87475 -9.69424 -9.48701 -8.97022 -8.89234 -8.41627 -6.71421 -5.79897 -3.22604 0.80738 1.54816 2.46985 3.13159 3.16853 3.39664 3.45774 3.47849 3.47993 3.92726 3.99859 4.22907 4.24379 4.46078 4.50432 4.55504 4.82526 5.00518 5.09638 5.24229 5.27467 5.35928 5.42030 5.48335 5.48812 5.52776 5.59138 5.69929 5.71915 5.77669 5.86836 5.95870 6.05347 6.18840 6.25845 6.34656 6.42555 6.54883 6.74426 6.94554 7.13543 7.47759 7.52481 7.80716 7.89372 7.92148 8.17554 8.44909 9.20045 9.86708 10.31024 11.28132 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016290 B = 0.002738 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.398146 B =10224.473137 C =11473.908840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.257 4.257 8 H 0.064 0.936 9 N -0.585 5.585 10 C 0.157 3.843 11 C -0.184 4.184 12 C 0.079 3.921 13 O -0.359 6.359 14 C 0.055 3.945 15 H 0.048 0.952 16 C 0.125 3.875 17 N -0.711 5.711 18 C 0.594 3.406 19 O -0.533 6.533 20 C -0.253 4.253 21 C 0.024 3.976 22 N -0.354 5.354 23 O 0.090 5.910 24 C 0.078 3.922 25 C -0.090 4.090 26 C -0.167 4.167 27 C -0.155 4.155 28 C 0.167 3.833 29 H 0.255 0.745 30 H 0.050 0.950 31 H 0.028 0.972 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.398 0.602 39 H 0.201 0.799 40 H 0.154 0.846 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.038 0.962 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.952 -13.452 -14.503 20.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.731 3.269 4 H -0.216 1.216 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.387 4.387 8 H 0.082 0.918 9 N -0.306 5.306 10 C 0.029 3.971 11 C -0.224 4.224 12 C 0.002 3.998 13 O -0.278 6.278 14 C -0.005 4.005 15 H 0.066 0.934 16 C 0.002 3.998 17 N -0.361 5.361 18 C 0.380 3.620 19 O -0.411 6.411 20 C -0.260 4.260 21 C -0.159 4.159 22 N -0.060 5.060 23 O 0.030 5.970 24 C 0.014 3.986 25 C -0.109 4.109 26 C -0.204 4.204 27 C -0.192 4.192 28 C 0.041 3.959 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.232 0.768 39 H 0.218 0.782 40 H 0.172 0.828 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.118 0.882 45 H 0.056 0.944 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.198 -13.677 -15.278 21.154 hybrid contribution 0.844 0.869 0.986 1.562 sum -4.354 -12.808 -14.291 19.679 Atomic orbital electron populations 1.70015 1.05209 1.25734 1.53967 1.24998 0.95274 0.98387 1.00588 0.86393 0.78990 0.83410 0.78111 1.21610 1.20963 1.20990 1.19114 0.92692 0.85170 1.41684 0.91846 1.43563 1.33579 1.01984 1.51461 1.20670 0.93870 0.88116 0.94475 1.22297 1.01328 1.00775 0.98023 1.21308 0.95664 0.88612 0.94228 1.87441 1.25630 1.56838 1.57865 1.23242 0.82732 1.00372 0.94198 0.93431 1.21650 1.00146 0.88564 0.89412 1.45774 1.50595 1.18038 1.21656 1.16744 0.79330 0.85445 0.80460 1.90797 1.45808 1.29594 1.74944 1.22082 1.07453 0.97082 0.99424 1.26389 1.01171 0.90329 0.97969 1.73657 1.08767 1.18644 1.04932 1.84538 1.50262 1.20573 1.41578 1.23758 0.95707 0.86540 0.92630 1.20758 1.01355 0.96747 0.91997 1.23129 0.96437 1.01527 0.99327 1.23098 0.99283 1.01213 0.95616 1.21681 0.89573 0.95706 0.88961 0.93510 0.93116 0.95382 0.91099 0.92357 0.91532 0.94792 0.89806 0.90122 0.76796 0.78175 0.82808 0.87815 0.87326 0.87116 0.88205 0.94375 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.64 11.08 55.49 0.62 -25.02 16 2 C 0.01 0.17 4.85 -17.43 -0.08 0.08 16 3 Si 0.90 21.73 29.59 -169.99 -5.03 16.70 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.26 -6.92 9.42 -15.06 -0.14 -7.06 16 8 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -14.09 2.58 -171.25 -0.44 -14.53 16 10 C 0.16 3.13 5.68 -4.14 -0.02 3.10 16 11 C -0.18 -3.08 6.03 -28.31 -0.17 -3.25 16 12 C 0.08 1.20 6.04 34.59 0.21 1.41 16 13 O -0.36 -6.52 9.78 -34.09 -0.33 -6.85 16 14 C 0.05 0.96 2.35 -25.85 -0.06 0.90 16 15 H 0.05 0.76 7.20 -51.93 -0.37 0.38 16 16 C 0.13 2.03 5.24 -4.04 -0.02 2.01 16 17 N -0.71 -9.59 5.49 -61.39 -0.34 -9.92 16 18 C 0.59 8.55 7.81 -12.53 -0.10 8.45 16 19 O -0.53 -9.19 15.33 5.27 0.08 -9.11 16 20 C -0.25 -3.07 6.47 -102.89 -0.67 -3.74 16 21 C 0.02 0.25 11.95 -14.73 -0.18 0.07 16 22 N -0.35 -4.11 12.01 31.81 0.38 -3.73 16 23 O 0.09 1.01 10.86 18.65 0.20 1.21 16 24 C 0.08 0.87 7.00 -34.63 -0.24 0.63 16 25 C -0.09 -0.86 5.74 -91.77 -0.53 -1.39 16 26 C -0.17 -1.14 10.18 -26.73 -0.27 -1.41 16 27 C -0.15 -1.17 10.23 -26.73 -0.27 -1.45 16 28 C 0.17 3.78 4.54 -2.24 -0.01 3.77 16 29 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.05 1.03 7.97 -51.93 -0.41 0.61 16 31 H 0.03 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.03 0.45 7.27 -51.93 -0.38 0.07 16 36 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.40 4.41 7.83 -40.82 -0.32 4.09 16 39 H 0.20 1.39 7.88 -52.49 -0.41 0.98 16 40 H 0.15 1.66 6.97 -51.93 -0.36 1.30 16 41 H 0.10 0.66 8.02 -51.93 -0.42 0.24 16 42 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.04 0.92 8.02 -51.93 -0.42 0.51 16 46 H 0.08 2.12 6.31 -51.93 -0.33 1.79 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -31.74 378.46 -8.49 -40.23 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -6.77 Total: 3.17 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -2.56 Total: 2.15 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: 0.22 Total: -53.21 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.05 Total: -14.75 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.74 -8.49 -40.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073841117.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.368 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds