Wall clock time and date at job start Tue Mar 31 2020 18:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00094 * 2 1 4 4 H 1.48495 * 109.47338 * 274.98304 * 3 2 1 5 5 H 1.48505 * 109.46711 * 34.98261 * 3 2 1 6 6 H 1.48501 * 109.47207 * 154.98026 * 3 2 1 7 7 C 1.38813 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00149 * 187.07284 * 7 2 1 9 9 N 1.36934 * 120.00063 * 7.06455 * 7 2 1 10 10 C 1.47027 * 125.64716 * 354.88222 * 9 7 2 11 11 C 1.54329 * 107.27046 * 178.90490 * 10 9 7 12 12 H 1.08994 * 110.72598 * 96.34430 * 11 10 9 13 13 O 1.42904 * 110.71695 * 219.44165 * 11 10 9 14 14 C 1.55158 * 103.10027 * 337.89382 * 11 10 9 15 15 H 1.09000 * 111.00228 * 277.34108 * 14 11 10 16 16 N 1.46494 * 111.00544 * 153.49159 * 14 11 10 17 17 C 1.34774 * 120.00394 * 154.99628 * 16 14 11 18 18 O 1.21608 * 119.99660 * 0.02562 * 17 16 14 19 19 C 1.47395 * 120.00496 * 179.97438 * 17 16 14 20 20 C 1.37367 * 128.56299 * 0.02562 * 19 17 16 21 21 O 1.33488 * 106.34046 * 179.97438 * 20 19 17 22 22 N 1.20651 * 113.15946 * 0.02562 * 21 20 19 23 23 C 1.30020 * 112.30296 * 359.72611 * 22 21 20 24 24 C 1.50695 * 127.33639 * 180.27553 * 23 22 21 25 25 C 1.54264 * 110.03625 * 57.31672 * 24 23 22 26 26 C 1.54882 * 104.19990 * 217.10340 * 25 24 23 27 27 C 1.54897 * 102.74770 * 37.94063 * 26 25 24 28 28 C 1.53878 * 110.03358 * 300.14961 * 24 23 22 29 29 C 1.47428 * 125.64979 * 174.83694 * 9 7 2 30 30 H 0.97002 * 120.00222 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.88633 * 59.48378 * 10 9 7 32 32 H 1.09007 * 110.01068 * 298.38891 * 10 9 7 33 33 H 0.96694 * 114.00091 * 296.15582 * 13 11 10 34 34 H 0.97001 * 120.00073 * 334.99979 * 16 14 11 35 35 H 1.08000 * 126.82738 * 359.96948 * 20 19 17 36 36 H 1.09005 * 110.01900 * 178.75951 * 24 23 22 37 37 H 1.09001 * 110.48501 * 335.78530 * 25 24 23 38 38 H 1.09001 * 110.48521 * 98.42146 * 25 24 23 39 39 H 1.09001 * 110.75588 * 279.63045 * 26 25 24 40 40 H 1.08996 * 110.76092 * 156.25266 * 26 25 24 41 41 H 1.08996 * 110.48692 * 203.37772 * 27 26 25 42 42 H 1.09000 * 110.48374 * 80.73525 * 27 26 25 43 43 H 1.09004 * 110.03347 * 238.57075 * 28 24 23 44 44 H 1.08997 * 110.03402 * 359.95260 * 28 24 23 45 45 H 1.09001 * 110.36567 * 323.00087 * 29 9 7 46 46 H 1.08993 * 110.36662 * 85.21969 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0840 -1.2057 0.1157 9 7 1.3334 -2.3836 -0.1448 10 6 -0.1282 -2.5322 -0.2034 11 6 -0.4286 -4.0331 -0.3999 12 1 -0.6417 -4.5122 0.5556 13 8 -1.5161 -4.2162 -1.3088 14 6 0.8911 -4.5796 -1.0058 15 1 0.9281 -4.4069 -2.0814 16 7 1.0608 -6.0018 -0.6983 17 6 1.8162 -6.7791 -1.4993 18 8 2.3573 -6.2996 -2.4771 19 6 1.9874 -8.2099 -1.1896 20 6 1.4633 -8.9280 -0.1424 21 8 1.8995 -10.1809 -0.2907 22 7 2.6022 -10.3271 -1.2605 23 6 2.7571 -9.2224 -1.9285 24 6 3.5571 -9.0217 -3.1897 25 6 3.0515 -9.9734 -4.2935 26 6 4.3365 -10.3992 -5.0460 27 6 5.3717 -10.5393 -3.9024 28 6 5.0324 -9.3815 -2.9411 29 6 1.9495 -3.7172 -0.2693 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5255 -1.9616 -1.0428 32 1 -0.5762 -2.1832 0.7271 33 1 -2.3570 -3.8578 -0.9933 34 1 0.6294 -6.3841 0.0819 35 1 0.8254 -8.5534 0.6444 36 1 3.4762 -7.9867 -3.5222 37 1 2.5616 -10.8419 -3.8533 38 1 2.3712 -9.4505 -4.9658 39 1 4.6436 -9.6284 -5.7528 40 1 4.1893 -11.3530 -5.5527 41 1 6.3848 -10.4295 -4.2893 42 1 5.2566 -11.4992 -3.3990 43 1 5.6675 -8.5214 -3.1536 44 1 5.1700 -9.7005 -1.9080 45 1 2.8666 -3.6581 -0.8555 46 1 2.1564 -4.1330 0.7167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077116860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:02 Heat of formation + Delta-G solvation = -5.564356 kcal Electronic energy + Delta-G solvation = -29146.256615 eV Core-core repulsion = 25039.561592 eV Total energy + Delta-G solvation = -4106.695023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.09507 -39.71761 -38.46236 -37.81477 -35.13123 -34.23871 -33.84516 -32.35674 -31.52131 -28.99912 -28.90270 -28.42745 -27.18347 -25.09640 -24.00360 -22.71229 -21.06253 -20.81173 -20.60482 -20.30204 -19.72308 -18.37084 -17.82514 -17.14011 -16.97608 -16.53570 -15.93419 -15.82523 -15.34414 -14.88262 -14.63999 -14.35243 -14.13586 -13.72938 -13.59754 -13.54934 -13.20963 -12.75128 -12.55726 -12.15260 -12.07925 -11.94575 -11.60491 -11.39248 -11.31764 -11.30220 -11.24265 -10.95994 -10.86330 -10.84566 -10.76830 -10.20736 -10.00718 -10.00105 -9.97148 -9.92234 -9.90788 -9.41086 -8.95238 -8.66690 -6.96770 -5.82554 -3.15900 0.89772 1.63370 2.72640 3.16869 3.20720 3.37097 3.42822 3.43965 3.80516 4.04291 4.39265 4.44228 4.46880 4.55538 4.66464 4.75169 4.87441 5.09579 5.14921 5.24053 5.31772 5.34644 5.36800 5.46757 5.47496 5.51537 5.58633 5.62420 5.69951 5.73958 5.78608 5.92366 5.99455 6.00624 6.03284 6.12824 6.22754 6.40424 6.54229 6.78181 7.24096 7.42209 7.51270 7.68775 8.02256 8.05071 8.11648 8.22187 9.09763 9.70103 10.32877 11.29701 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.002616 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.376384 B =10700.091836 C =11521.206350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.599 5.599 10 C 0.152 3.848 11 C 0.069 3.931 12 H 0.057 0.943 13 O -0.563 6.563 14 C 0.139 3.861 15 H 0.109 0.891 16 N -0.706 5.706 17 C 0.594 3.406 18 O -0.524 6.524 19 C -0.245 4.245 20 C -0.011 4.011 21 O 0.096 5.904 22 N -0.356 5.356 23 C 0.082 3.918 24 C -0.024 4.024 25 C -0.115 4.115 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.114 4.114 29 C 0.130 3.870 30 H 0.254 0.746 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.377 0.623 34 H 0.395 0.605 35 H 0.225 0.775 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.052 0.948 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -21.269 -1.794 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.359 4.359 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.027 3.973 11 C 0.009 3.991 12 H 0.075 0.925 13 O -0.368 6.368 14 C 0.034 3.966 15 H 0.126 0.874 16 N -0.356 5.356 17 C 0.380 3.620 18 O -0.401 6.401 19 C -0.253 4.253 20 C -0.094 4.094 21 O 0.036 5.964 22 N -0.063 5.063 23 C -0.081 4.081 24 C -0.044 4.044 25 C -0.153 4.153 26 C -0.161 4.161 27 C -0.160 4.160 28 C -0.152 4.152 29 C 0.003 3.997 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.224 0.776 34 H 0.229 0.771 35 H 0.241 0.759 36 H 0.134 0.866 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 3.061 -22.214 -2.958 22.618 hybrid contribution -0.601 1.897 0.981 2.219 sum 2.460 -20.317 -1.977 20.561 Atomic orbital electron populations 1.69926 1.04998 1.25324 1.56624 1.24837 0.95761 0.97814 1.01758 0.86074 0.78696 0.83230 0.77631 1.21437 1.21713 1.20520 1.19082 0.91282 0.82190 1.43328 0.90079 1.44229 1.01169 1.00979 1.86318 1.21851 0.85553 0.88060 1.01882 1.23459 0.85944 0.99061 0.90663 0.92498 1.86467 1.20178 1.82932 1.47262 1.22354 0.94633 0.77510 1.02120 0.87352 1.45725 1.50864 1.10252 1.28786 1.16802 0.79059 0.83242 0.82944 1.90793 1.47570 1.74157 1.27554 1.22451 1.06882 0.96684 0.99265 1.26402 0.98915 0.84306 0.99750 1.84575 1.47848 1.28254 1.35698 1.73614 1.11077 1.23108 0.98453 1.24772 0.98066 0.86839 0.98421 1.20519 0.92732 1.03051 0.88058 1.22440 0.97921 0.98551 0.96383 1.22491 0.94821 1.01299 0.97465 1.22356 0.98955 0.98512 0.96194 1.22186 0.94222 0.98821 0.99975 1.21881 0.94983 0.86294 0.96553 0.93589 0.91907 0.93402 0.77557 0.77107 0.75851 0.86560 0.91304 0.91028 0.91086 0.91413 0.91494 0.91583 0.90866 0.91767 0.93015 0.95902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.22 10.36 55.49 0.57 -25.65 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 21.77 29.56 -169.99 -5.02 16.75 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.33 10.27 -15.06 -0.15 -6.48 16 8 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 9 N -0.60 -14.89 3.40 -169.93 -0.58 -15.47 16 10 C 0.15 3.47 5.16 -3.06 -0.02 3.46 16 11 C 0.07 1.20 3.97 -24.89 -0.10 1.10 16 12 H 0.06 0.84 8.00 -51.93 -0.42 0.43 16 13 O -0.56 -9.27 13.39 -35.23 -0.47 -9.74 16 14 C 0.14 2.48 3.16 -65.67 -0.21 2.27 16 15 H 0.11 2.26 7.54 -51.93 -0.39 1.87 16 16 N -0.71 -9.74 5.20 -52.70 -0.27 -10.02 16 17 C 0.59 8.90 7.81 -12.53 -0.10 8.80 16 18 O -0.52 -9.76 14.92 5.27 0.08 -9.68 16 19 C -0.25 -2.99 6.47 -102.89 -0.67 -3.66 16 20 C -0.01 -0.10 11.85 30.42 0.36 0.26 16 21 O 0.10 0.98 11.06 18.67 0.21 1.19 16 22 N -0.36 -4.32 11.83 34.78 0.41 -3.91 16 23 C 0.08 1.03 5.79 -79.77 -0.46 0.57 16 24 C -0.02 -0.29 3.37 -90.66 -0.31 -0.60 16 25 C -0.11 -1.19 6.35 -25.08 -0.16 -1.35 16 26 C -0.12 -1.06 6.91 -24.74 -0.17 -1.23 16 27 C -0.12 -1.08 6.83 -25.07 -0.17 -1.25 16 28 C -0.11 -1.20 6.45 -25.61 -0.17 -1.36 16 29 C 0.13 2.67 6.94 -2.41 -0.02 2.66 16 30 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.06 1.63 7.21 -51.93 -0.37 1.26 16 32 H 0.05 1.18 7.61 -51.93 -0.40 0.78 16 33 H 0.38 4.67 9.12 45.56 0.42 5.09 16 34 H 0.40 3.98 7.75 -40.82 -0.32 3.66 16 35 H 0.23 0.82 7.68 -52.49 -0.40 0.42 16 36 H 0.12 1.61 6.34 -51.93 -0.33 1.28 16 37 H 0.07 0.74 7.70 -51.93 -0.40 0.34 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.71 7.67 -51.93 -0.40 0.32 16 45 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 375.72 15.07 5.66 5.66 Total: -1.00 -33.57 375.72 -7.78 -41.34 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -5.94 Total: 6.57 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: -2.42 Total: 2.95 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.14 Total: -55.04 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.19 Total: -18.23 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.57 -7.78 -41.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077116860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.780 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds