Wall clock time and date at job start Tue Mar 31 2020 18:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00094 * 2 1 4 4 H 1.48495 * 109.47338 * 274.98304 * 3 2 1 5 5 H 1.48505 * 109.46711 * 34.98261 * 3 2 1 6 6 H 1.48501 * 109.47207 * 154.98026 * 3 2 1 7 7 C 1.38813 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00149 * 187.07284 * 7 2 1 9 9 N 1.36934 * 120.00063 * 7.06455 * 7 2 1 10 10 C 1.47027 * 125.64716 * 354.88222 * 9 7 2 11 11 C 1.54329 * 107.27046 * 178.90490 * 10 9 7 12 12 H 1.08994 * 110.72598 * 96.34430 * 11 10 9 13 13 O 1.42904 * 110.71695 * 219.44165 * 11 10 9 14 14 C 1.55158 * 103.10027 * 337.89382 * 11 10 9 15 15 H 1.09000 * 111.00228 * 277.34108 * 14 11 10 16 16 N 1.46494 * 111.00544 * 153.49159 * 14 11 10 17 17 C 1.34774 * 120.00394 * 154.99628 * 16 14 11 18 18 O 1.21608 * 119.99660 * 0.02562 * 17 16 14 19 19 C 1.47395 * 120.00496 * 179.97438 * 17 16 14 20 20 C 1.37367 * 128.56299 * 0.02562 * 19 17 16 21 21 O 1.33488 * 106.34046 * 179.97438 * 20 19 17 22 22 N 1.20651 * 113.15946 * 0.02562 * 21 20 19 23 23 C 1.30020 * 112.30296 * 359.72611 * 22 21 20 24 24 C 1.50695 * 127.33639 * 180.27553 * 23 22 21 25 25 C 1.54264 * 110.03625 * 57.31672 * 24 23 22 26 26 C 1.54882 * 104.19990 * 217.10340 * 25 24 23 27 27 C 1.54897 * 102.74770 * 37.94063 * 26 25 24 28 28 C 1.53878 * 110.03358 * 300.14961 * 24 23 22 29 29 C 1.47428 * 125.64979 * 174.83694 * 9 7 2 30 30 H 0.97002 * 120.00222 * 0.02562 * 1 2 3 31 31 H 1.08995 * 109.88633 * 59.48378 * 10 9 7 32 32 H 1.09007 * 110.01068 * 298.38891 * 10 9 7 33 33 H 0.96694 * 114.00091 * 296.15582 * 13 11 10 34 34 H 0.97001 * 120.00073 * 334.99979 * 16 14 11 35 35 H 1.08000 * 126.82738 * 359.96948 * 20 19 17 36 36 H 1.09005 * 110.01900 * 178.75951 * 24 23 22 37 37 H 1.09001 * 110.48501 * 335.78530 * 25 24 23 38 38 H 1.09001 * 110.48521 * 98.42146 * 25 24 23 39 39 H 1.09001 * 110.75588 * 279.63045 * 26 25 24 40 40 H 1.08996 * 110.76092 * 156.25266 * 26 25 24 41 41 H 1.08996 * 110.48692 * 203.37772 * 27 26 25 42 42 H 1.09000 * 110.48374 * 80.73525 * 27 26 25 43 43 H 1.09004 * 110.03347 * 238.57075 * 28 24 23 44 44 H 1.08997 * 110.03402 * 359.95260 * 28 24 23 45 45 H 1.09001 * 110.36567 * 323.00087 * 29 9 7 46 46 H 1.08993 * 110.36662 * 85.21969 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0102 -1.2022 0.0005 8 1 3.0840 -1.2057 0.1157 9 7 1.3334 -2.3836 -0.1448 10 6 -0.1282 -2.5322 -0.2034 11 6 -0.4286 -4.0331 -0.3999 12 1 -0.6417 -4.5122 0.5556 13 8 -1.5161 -4.2162 -1.3088 14 6 0.8911 -4.5796 -1.0058 15 1 0.9281 -4.4069 -2.0814 16 7 1.0608 -6.0018 -0.6983 17 6 1.8162 -6.7791 -1.4993 18 8 2.3573 -6.2996 -2.4771 19 6 1.9874 -8.2099 -1.1896 20 6 1.4633 -8.9280 -0.1424 21 8 1.8995 -10.1809 -0.2907 22 7 2.6022 -10.3271 -1.2605 23 6 2.7571 -9.2224 -1.9285 24 6 3.5571 -9.0217 -3.1897 25 6 3.0515 -9.9734 -4.2935 26 6 4.3365 -10.3992 -5.0460 27 6 5.3717 -10.5393 -3.9024 28 6 5.0324 -9.3815 -2.9411 29 6 1.9495 -3.7172 -0.2693 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5255 -1.9616 -1.0428 32 1 -0.5762 -2.1832 0.7271 33 1 -2.3570 -3.8578 -0.9933 34 1 0.6294 -6.3841 0.0819 35 1 0.8254 -8.5534 0.6444 36 1 3.4762 -7.9867 -3.5222 37 1 2.5616 -10.8419 -3.8533 38 1 2.3712 -9.4505 -4.9658 39 1 4.6436 -9.6284 -5.7528 40 1 4.1893 -11.3530 -5.5527 41 1 6.3848 -10.4295 -4.2893 42 1 5.2566 -11.4992 -3.3990 43 1 5.6675 -8.5214 -3.1536 44 1 5.1700 -9.7005 -1.9080 45 1 2.8666 -3.6581 -0.8555 46 1 2.1564 -4.1330 0.7167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077116860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:01 Heat of formation + Delta-G solvation = -30.739921 kcal Electronic energy + Delta-G solvation = -29147.348309 eV Core-core repulsion = 25039.561592 eV Total energy + Delta-G solvation = -4107.786717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.97557 -41.01788 -39.48711 -39.09944 -36.66702 -35.67679 -34.75527 -33.78964 -32.87375 -30.27841 -29.70380 -29.69770 -28.79895 -26.66114 -25.38255 -23.54474 -22.50777 -22.06870 -21.76944 -21.53237 -20.58406 -19.48207 -18.90380 -18.69200 -18.27352 -17.66651 -17.35274 -16.71730 -16.61528 -16.20323 -15.99962 -15.72587 -15.64124 -14.91682 -14.59282 -14.47466 -14.39166 -14.34104 -14.24026 -13.75115 -13.20009 -13.16399 -12.91177 -12.83944 -12.76439 -12.72483 -12.19681 -12.08611 -12.07550 -11.99349 -11.90452 -11.74631 -11.55607 -11.54006 -11.23245 -10.91426 -10.88759 -10.76480 -10.75306 -10.22735 -8.96768 -7.91121 -5.26315 0.06937 0.71721 1.45227 1.48068 1.55934 1.76148 2.09611 2.23195 2.47263 2.91805 3.12964 3.20516 3.30127 3.54544 3.63214 3.65425 3.81288 3.87699 3.92047 3.99552 4.06960 4.21845 4.40899 4.43646 4.45434 4.52270 4.52594 4.56084 4.66498 4.74945 4.82811 4.83372 4.91233 4.98218 4.99648 5.17690 5.20592 5.31576 5.35272 5.39470 5.42382 5.47194 5.66766 6.13294 6.42654 6.87645 7.04156 7.10546 7.21279 7.68914 8.31061 9.19097 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.002616 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.376384 B =10700.091836 C =11521.206350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.976 3.024 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.248 4.248 8 H 0.081 0.919 9 N -0.622 5.622 10 C 0.159 3.841 11 C 0.093 3.907 12 H 0.101 0.899 13 O -0.570 6.570 14 C 0.155 3.845 15 H 0.074 0.926 16 N -0.689 5.689 17 C 0.596 3.404 18 O -0.570 6.570 19 C -0.281 4.281 20 C 0.036 3.964 21 O 0.102 5.898 22 N -0.369 5.369 23 C 0.067 3.933 24 C -0.029 4.029 25 C -0.112 4.112 26 C -0.119 4.119 27 C -0.118 4.118 28 C -0.113 4.113 29 C 0.131 3.869 30 H 0.250 0.750 31 H 0.021 0.979 32 H 0.027 0.973 33 H 0.397 0.603 34 H 0.418 0.582 35 H 0.280 0.720 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.069 0.931 44 H 0.056 0.944 45 H 0.033 0.967 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.573 -23.350 -0.392 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.804 3.196 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.376 4.376 8 H 0.099 0.901 9 N -0.349 5.349 10 C 0.033 3.967 11 C 0.032 3.968 12 H 0.118 0.882 13 O -0.378 6.378 14 C 0.048 3.952 15 H 0.092 0.908 16 N -0.341 5.341 17 C 0.384 3.616 18 O -0.450 6.450 19 C -0.289 4.289 20 C -0.046 4.046 21 O 0.043 5.957 22 N -0.075 5.075 23 C -0.095 4.095 24 C -0.049 4.049 25 C -0.150 4.150 26 C -0.157 4.157 27 C -0.155 4.155 28 C -0.151 4.151 29 C 0.004 3.996 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.247 0.753 34 H 0.256 0.744 35 H 0.295 0.705 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.786 -24.353 -1.525 24.559 hybrid contribution -0.544 2.510 0.571 2.631 sum 2.242 -21.843 -0.953 21.978 Atomic orbital electron populations 1.70117 1.06124 1.25570 1.57531 1.25628 0.96683 1.00855 1.02073 0.85098 0.78001 0.79256 0.77218 1.21731 1.21659 1.19248 1.19416 0.91678 0.83648 1.42895 0.90103 1.44491 1.02334 1.01876 1.86248 1.21666 0.84365 0.91644 0.99044 1.23167 0.86015 0.95097 0.92491 0.88174 1.86435 1.20956 1.82758 1.47625 1.21787 0.94153 0.79498 0.99749 0.90805 1.45370 1.50860 1.08285 1.29546 1.17128 0.78045 0.84289 0.82114 1.90780 1.49378 1.75250 1.29590 1.22157 1.09776 0.95296 1.01655 1.27278 0.96208 0.82624 0.98536 1.84566 1.47255 1.28943 1.34912 1.73622 1.11870 1.22977 0.99024 1.24917 0.98462 0.87345 0.98794 1.20491 0.93779 1.01897 0.88719 1.22416 0.98697 0.97925 0.96006 1.22500 0.93690 1.02132 0.97345 1.22343 0.99756 0.97675 0.95735 1.22176 0.93395 0.99476 1.00043 1.21976 0.94906 0.85169 0.97539 0.94103 0.96067 0.95507 0.75304 0.74350 0.70510 0.89185 0.91626 0.91496 0.90813 0.89846 0.90079 0.91391 0.91183 0.92517 0.94861 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.13 10.36 21.65 0.22 -54.90 16 2 C -0.06 -3.30 5.48 84.86 0.46 -2.83 16 3 Si 0.98 45.36 29.56 68.60 2.03 47.38 16 4 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.25 -13.82 10.27 84.03 0.86 -12.95 16 8 H 0.08 4.37 7.84 -2.91 -0.02 4.35 16 9 N -0.62 -31.37 3.40 -691.55 -2.35 -33.72 16 10 C 0.16 7.34 5.16 86.73 0.45 7.78 16 11 C 0.09 3.05 3.97 31.78 0.13 3.18 16 12 H 0.10 2.53 8.00 -2.39 -0.02 2.51 16 13 O -0.57 -17.73 13.39 -148.98 -1.99 -19.72 16 14 C 0.15 5.42 3.16 46.46 0.15 5.56 16 15 H 0.07 3.16 7.54 -2.39 -0.02 3.14 16 16 N -0.69 -17.43 5.20 -438.91 -2.28 -19.72 16 17 C 0.60 17.37 7.81 86.65 0.68 18.05 16 18 O -0.57 -21.95 14.92 -4.06 -0.06 -22.01 16 19 C -0.28 -6.35 6.47 -18.74 -0.12 -6.47 16 20 C 0.04 0.46 11.85 67.61 0.80 1.26 16 21 O 0.10 1.76 11.06 77.04 0.85 2.61 16 22 N -0.37 -8.33 11.83 -44.78 -0.53 -8.86 16 23 C 0.07 1.65 5.79 45.15 0.26 1.91 16 24 C -0.03 -0.72 3.37 -10.82 -0.04 -0.76 16 25 C -0.11 -2.32 6.35 31.67 0.20 -2.12 16 26 C -0.12 -1.94 6.91 31.89 0.22 -1.72 16 27 C -0.12 -1.95 6.83 31.67 0.22 -1.73 16 28 C -0.11 -2.38 6.45 31.32 0.20 -2.18 16 29 C 0.13 5.34 6.94 86.93 0.60 5.94 16 30 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 31 H 0.02 1.14 7.21 -2.39 -0.02 1.12 16 32 H 0.03 1.34 7.61 -2.38 -0.02 1.32 16 33 H 0.40 9.00 9.12 -74.06 -0.68 8.33 16 34 H 0.42 6.54 7.75 -92.71 -0.72 5.82 16 35 H 0.28 0.17 7.68 -2.91 -0.02 0.15 16 36 H 0.09 2.67 6.34 -2.38 -0.02 2.65 16 37 H 0.06 1.38 7.70 -2.39 -0.02 1.36 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.26 7.67 -2.39 -0.02 1.24 16 45 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -77.43 375.72 0.59 -76.84 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -0.37 Total: 19.16 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 5.07 Total: 12.93 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -4.94 Total: -117.20 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -1.20 Total: -39.12 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -77.43 0.59 -76.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077116860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.102 kcal (2) G-P(sol) polarization free energy of solvation -77.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds