Wall clock time and date at job start Tue Mar 31 2020 18:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86812 * 119.99765 * 2 1 4 4 H 1.48500 * 109.46972 * 270.00237 * 3 2 1 5 5 H 1.48500 * 109.46717 * 30.00156 * 3 2 1 6 6 H 1.48496 * 109.47032 * 150.00030 * 3 2 1 7 7 C 1.38808 * 120.00727 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99363 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00696 * 180.02562 * 7 2 1 10 10 C 1.46495 * 120.00451 * 179.97438 * 9 7 2 11 11 H 1.09008 * 112.88537 * 26.83442 * 10 9 7 12 12 C 1.53952 * 113.66117 * 255.49204 * 10 9 7 13 13 C 1.53951 * 87.29666 * 220.69775 * 12 10 9 14 14 H 1.08999 * 113.66378 * 139.29448 * 13 12 10 15 15 N 1.46504 * 113.66086 * 270.26545 * 13 12 10 16 16 C 1.34777 * 119.99620 * 253.98520 * 15 13 12 17 17 O 1.21280 * 120.00054 * 359.97438 * 16 15 13 18 18 C 1.50704 * 119.99899 * 180.02562 * 16 15 13 19 19 C 1.53244 * 109.61934 * 179.97438 * 18 16 15 20 20 C 1.50583 * 109.15924 * 184.65870 * 19 18 16 21 21 O 1.21224 * 119.36127 * 209.09755 * 20 19 18 22 22 N 1.34144 * 121.28064 * 29.07120 * 20 19 18 23 23 C 1.34144 * 122.58756 * 359.47370 * 22 20 19 24 24 O 1.21228 * 119.35731 * 180.54653 * 23 22 20 25 25 C 1.50589 * 121.27852 * 0.55030 * 23 22 20 26 26 C 1.52914 * 86.88323 * 24.77812 * 13 12 10 27 27 C 1.52900 * 121.14343 * 209.33269 * 26 13 12 28 28 C 1.53950 * 86.78392 * 209.38032 * 27 26 13 29 29 C 1.52906 * 121.13569 * 100.76727 * 26 13 12 30 30 H 0.96995 * 120.00644 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99561 * 359.97438 * 9 7 2 32 32 H 1.08998 * 113.58283 * 106.09306 * 12 10 9 33 33 H 1.09002 * 113.58040 * 335.30174 * 12 10 9 34 34 H 0.97001 * 120.00114 * 73.98546 * 15 13 12 35 35 H 1.09000 * 109.76383 * 300.45889 * 18 16 15 36 36 H 1.08999 * 109.52402 * 64.75471 * 19 18 16 37 37 H 1.09001 * 109.57555 * 304.59347 * 19 18 16 38 38 H 0.96999 * 118.70691 * 179.19666 * 22 20 19 39 39 H 1.08999 * 109.50554 * 210.98788 * 25 23 22 40 40 H 1.08999 * 109.54022 * 90.79671 * 25 23 22 41 41 H 1.09002 * 113.66641 * 323.84801 * 27 26 13 42 42 H 1.09006 * 113.66360 * 94.90663 * 27 26 13 43 43 H 1.09006 * 113.57722 * 270.12888 * 28 27 26 44 44 H 1.09001 * 113.65359 * 139.35294 * 28 27 26 45 45 H 1.09006 * 113.66443 * 265.09565 * 29 26 13 46 46 H 1.08996 * 113.66421 * 36.06307 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4706 0.0000 11 1 3.5484 -3.2858 -0.4538 12 6 4.7266 -2.8293 1.3653 13 6 5.9711 -3.3102 0.5971 14 1 6.9123 -3.0375 1.0744 15 7 5.9154 -4.7228 0.2128 16 6 6.6683 -5.6293 0.8669 17 8 7.3923 -5.2755 1.7733 18 6 6.6115 -7.0824 0.4712 19 6 7.5551 -7.8959 1.3634 20 6 7.5774 -9.3240 0.8865 21 8 7.7915 -10.2132 1.6822 22 7 7.3645 -9.6315 -0.4018 23 6 7.1110 -8.7011 -1.3343 24 8 6.9174 -9.0457 -2.4803 25 6 7.0624 -7.2371 -0.9851 26 6 5.5491 -2.3536 -0.5187 27 6 5.8905 -2.6440 -1.9806 28 6 5.9077 -1.1188 -2.1892 29 6 6.2206 -0.9903 -0.6874 30 1 -0.4851 0.8399 0.0004 31 1 3.8646 -0.3619 0.0004 32 1 4.1986 -3.6292 1.8844 33 1 4.9138 -1.9634 2.0003 34 1 5.3366 -5.0057 -0.5125 35 1 5.5927 -7.4544 0.5800 36 1 7.2019 -7.8615 2.3940 37 1 8.5603 -7.4779 1.3087 38 1 7.3990 -10.5630 -0.6703 39 1 6.3554 -6.7297 -1.6414 40 1 8.0533 -6.7999 -1.1080 41 1 6.8639 -3.1152 -2.1172 42 1 5.0930 -3.1510 -2.5238 43 1 4.9385 -0.7062 -2.4697 44 1 6.7163 -0.7748 -2.8342 45 1 5.6866 -0.1759 -0.1975 46 1 7.2863 -0.9963 -0.4590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078748572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:05 Heat of formation + Delta-G solvation = -51.563947 kcal Electronic energy + Delta-G solvation = -29417.777111 eV Core-core repulsion = 25309.087397 eV Total energy + Delta-G solvation = -4108.689715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05077 -40.84932 -39.37728 -39.28514 -35.92168 -35.29244 -34.39562 -34.20041 -32.32800 -30.51095 -29.32928 -26.13730 -25.68880 -24.46871 -24.33870 -23.66824 -21.95644 -21.05105 -20.23165 -19.86620 -18.56263 -18.26296 -17.87548 -17.64707 -17.09324 -16.35330 -16.11230 -15.71169 -15.28891 -15.16092 -15.04733 -14.87306 -14.79370 -14.37744 -14.02877 -13.95454 -13.30065 -12.95369 -12.79389 -12.61100 -12.31509 -12.20975 -12.02539 -12.01411 -11.85441 -11.63856 -11.29731 -11.08100 -11.04509 -10.81678 -10.74383 -10.70457 -10.37614 -10.24310 -10.01334 -9.96246 -9.80113 -9.57318 -8.97671 -8.94299 -7.35602 -5.86398 -3.22470 0.99197 2.18745 2.24967 2.31373 2.83092 3.29593 3.31818 3.38786 3.41132 3.80882 3.96546 4.09128 4.39452 4.49882 4.51788 4.61775 4.75091 4.79290 4.83358 4.96958 4.99535 5.01057 5.18275 5.25227 5.33531 5.42538 5.50575 5.54690 5.70738 5.78065 5.81260 5.85806 5.91572 6.08213 6.16818 6.21944 6.27058 6.30562 6.45191 6.60384 6.66071 6.81227 6.84695 7.29684 7.31737 7.89243 7.95423 8.33186 9.10658 9.83053 10.02362 11.31714 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.002653 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.145810 B =10552.257765 C =10698.817671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.880 3.120 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.733 5.733 10 C 0.198 3.802 11 H 0.083 0.917 12 C -0.174 4.174 13 C 0.130 3.870 14 H 0.098 0.902 15 N -0.698 5.698 16 C 0.524 3.476 17 O -0.532 6.532 18 C -0.115 4.115 19 C -0.123 4.123 20 C 0.528 3.472 21 O -0.498 6.498 22 N -0.677 5.677 23 C 0.530 3.470 24 O -0.496 6.496 25 C -0.136 4.136 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.135 4.135 29 C -0.113 4.113 30 H 0.260 0.740 31 H 0.364 0.636 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.403 0.597 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.413 0.587 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.071 0.929 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.430 -13.747 -2.570 22.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.710 3.290 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.108 0.892 9 N -0.373 5.373 10 C 0.086 3.914 11 H 0.101 0.899 12 C -0.216 4.216 13 C 0.025 3.975 14 H 0.116 0.884 15 N -0.348 5.348 16 C 0.309 3.691 17 O -0.409 6.409 18 C -0.137 4.137 19 C -0.163 4.163 20 C 0.316 3.684 21 O -0.370 6.370 22 N -0.342 5.342 23 C 0.318 3.682 24 O -0.368 6.368 25 C -0.176 4.176 26 C -0.127 4.127 27 C -0.162 4.162 28 C -0.173 4.173 29 C -0.151 4.151 30 H 0.071 0.929 31 H 0.199 0.801 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.237 0.763 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.253 0.747 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 17.651 -13.931 -2.042 22.579 hybrid contribution 0.178 0.716 -0.379 0.829 sum 17.828 -13.215 -2.421 22.324 Atomic orbital electron populations 1.69687 1.05135 1.25957 1.57024 1.24672 0.95193 0.97180 1.01754 0.86630 0.79305 0.85179 0.77891 1.20917 1.21635 1.20279 1.19091 0.80578 0.94731 1.43525 0.89154 1.42730 1.03968 1.01988 1.88648 1.21335 0.87717 0.90021 0.92354 0.89879 1.24245 0.96171 1.01027 1.00172 1.21734 0.99910 0.78845 0.97018 0.88371 1.45604 1.44607 1.07561 1.36988 1.19956 0.80089 0.86610 0.82447 1.90749 1.39926 1.80616 1.29559 1.21536 1.02813 0.94672 0.94641 1.21783 1.03499 0.88687 1.02284 1.20966 0.73882 0.92561 0.80951 1.90815 1.43885 1.49454 1.52848 1.44906 1.66094 1.13148 1.10090 1.20759 0.73999 0.88794 0.84615 1.90833 1.44384 1.82244 1.19376 1.21981 1.06950 0.92160 0.96531 1.23631 0.99339 0.96088 0.93605 1.22639 1.00995 0.96935 0.95630 1.22776 1.02180 0.96391 0.95933 1.22496 0.99653 0.95984 0.96926 0.92943 0.80128 0.91769 0.89577 0.76271 0.86544 0.85759 0.85926 0.74699 0.85864 0.86158 0.90596 0.91261 0.89418 0.92060 0.91082 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.23 13.97 55.49 0.78 -27.46 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 21.12 27.74 -169.99 -4.71 16.41 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 7 C -0.25 -6.58 10.46 -15.06 -0.16 -6.74 16 8 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 9 N -0.73 -15.68 5.16 -52.84 -0.27 -15.95 16 10 C 0.20 3.25 4.28 -67.33 -0.29 2.96 16 11 H 0.08 1.36 8.12 -51.92 -0.42 0.94 16 12 C -0.17 -2.62 7.68 -25.74 -0.20 -2.82 16 13 C 0.13 1.56 4.09 -67.48 -0.28 1.29 16 14 H 0.10 1.27 7.50 -51.93 -0.39 0.88 16 15 N -0.70 -6.28 4.97 -53.36 -0.27 -6.54 16 16 C 0.52 4.65 7.16 -10.98 -0.08 4.57 16 17 O -0.53 -6.73 15.57 5.56 0.09 -6.64 16 18 C -0.11 -0.63 2.66 -91.52 -0.24 -0.87 16 19 C -0.12 -0.74 4.70 -27.81 -0.13 -0.87 16 20 C 0.53 3.85 7.74 -11.32 -0.09 3.76 16 21 O -0.50 -5.46 17.87 5.61 0.10 -5.36 16 22 N -0.68 -4.22 5.09 -11.75 -0.06 -4.28 16 23 C 0.53 3.54 7.74 -11.32 -0.09 3.45 16 24 O -0.50 -5.11 17.88 5.60 0.10 -5.01 16 25 C -0.14 -0.61 5.24 -27.82 -0.15 -0.76 16 26 C -0.12 -1.59 0.92 -154.56 -0.14 -1.74 16 27 C -0.12 -1.37 7.46 -26.29 -0.20 -1.57 16 28 C -0.14 -1.70 8.08 -25.75 -0.21 -1.91 16 29 C -0.11 -1.47 7.46 -26.29 -0.20 -1.66 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.36 7.74 3.74 -40.82 -0.15 7.59 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.40 2.85 8.17 -40.82 -0.33 2.52 16 35 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.12 0.68 7.98 -51.93 -0.41 0.27 16 38 H 0.41 2.36 8.79 -40.82 -0.36 2.00 16 39 H 0.12 0.44 7.77 -51.93 -0.40 0.03 16 40 H 0.12 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 1.07 6.44 -51.93 -0.33 0.74 16 46 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -34.55 376.47 -7.74 -42.29 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.63 Total: 9.63 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.53 Total: -2.76 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.18 Total: -54.23 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.29 Total: -17.01 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.71 Total: 16.41 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.55 -7.74 -42.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078748572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.278 kcal (2) G-P(sol) polarization free energy of solvation -34.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds