Wall clock time and date at job start Tue Mar 31 2020 18:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86812 * 119.99765 * 2 1 4 4 H 1.48500 * 109.46972 * 270.00237 * 3 2 1 5 5 H 1.48500 * 109.46717 * 30.00156 * 3 2 1 6 6 H 1.48496 * 109.47032 * 150.00030 * 3 2 1 7 7 C 1.38808 * 120.00727 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99363 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00696 * 180.02562 * 7 2 1 10 10 C 1.46495 * 120.00451 * 179.97438 * 9 7 2 11 11 H 1.09008 * 112.88537 * 26.83442 * 10 9 7 12 12 C 1.53952 * 113.66117 * 255.49204 * 10 9 7 13 13 C 1.53951 * 87.29666 * 220.69775 * 12 10 9 14 14 H 1.08999 * 113.66378 * 139.29448 * 13 12 10 15 15 N 1.46504 * 113.66086 * 270.26545 * 13 12 10 16 16 C 1.34777 * 119.99620 * 253.98520 * 15 13 12 17 17 O 1.21280 * 120.00054 * 359.97438 * 16 15 13 18 18 C 1.50704 * 119.99899 * 180.02562 * 16 15 13 19 19 C 1.53244 * 109.61934 * 179.97438 * 18 16 15 20 20 C 1.50583 * 109.15924 * 184.65870 * 19 18 16 21 21 O 1.21224 * 119.36127 * 209.09755 * 20 19 18 22 22 N 1.34144 * 121.28064 * 29.07120 * 20 19 18 23 23 C 1.34144 * 122.58756 * 359.47370 * 22 20 19 24 24 O 1.21228 * 119.35731 * 180.54653 * 23 22 20 25 25 C 1.50589 * 121.27852 * 0.55030 * 23 22 20 26 26 C 1.52914 * 86.88323 * 24.77812 * 13 12 10 27 27 C 1.52900 * 121.14343 * 209.33269 * 26 13 12 28 28 C 1.53950 * 86.78392 * 209.38032 * 27 26 13 29 29 C 1.52906 * 121.13569 * 100.76727 * 26 13 12 30 30 H 0.96995 * 120.00644 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99561 * 359.97438 * 9 7 2 32 32 H 1.08998 * 113.58283 * 106.09306 * 12 10 9 33 33 H 1.09002 * 113.58040 * 335.30174 * 12 10 9 34 34 H 0.97001 * 120.00114 * 73.98546 * 15 13 12 35 35 H 1.09000 * 109.76383 * 300.45889 * 18 16 15 36 36 H 1.08999 * 109.52402 * 64.75471 * 19 18 16 37 37 H 1.09001 * 109.57555 * 304.59347 * 19 18 16 38 38 H 0.96999 * 118.70691 * 179.19666 * 22 20 19 39 39 H 1.08999 * 109.50554 * 210.98788 * 25 23 22 40 40 H 1.08999 * 109.54022 * 90.79671 * 25 23 22 41 41 H 1.09002 * 113.66641 * 323.84801 * 27 26 13 42 42 H 1.09006 * 113.66360 * 94.90663 * 27 26 13 43 43 H 1.09006 * 113.57722 * 270.12888 * 28 27 26 44 44 H 1.09001 * 113.65359 * 139.35294 * 28 27 26 45 45 H 1.09006 * 113.66443 * 265.09565 * 29 26 13 46 46 H 1.08996 * 113.66421 * 36.06307 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2020 0.0000 10 6 4.1123 -2.4706 0.0000 11 1 3.5484 -3.2858 -0.4538 12 6 4.7266 -2.8293 1.3653 13 6 5.9711 -3.3102 0.5971 14 1 6.9123 -3.0375 1.0744 15 7 5.9154 -4.7228 0.2128 16 6 6.6683 -5.6293 0.8669 17 8 7.3923 -5.2755 1.7733 18 6 6.6115 -7.0824 0.4712 19 6 7.5551 -7.8959 1.3634 20 6 7.5774 -9.3240 0.8865 21 8 7.7915 -10.2132 1.6822 22 7 7.3645 -9.6315 -0.4018 23 6 7.1110 -8.7011 -1.3343 24 8 6.9174 -9.0457 -2.4803 25 6 7.0624 -7.2371 -0.9851 26 6 5.5491 -2.3536 -0.5187 27 6 5.8905 -2.6440 -1.9806 28 6 5.9077 -1.1188 -2.1892 29 6 6.2206 -0.9903 -0.6874 30 1 -0.4851 0.8399 0.0004 31 1 3.8646 -0.3619 0.0004 32 1 4.1986 -3.6292 1.8844 33 1 4.9138 -1.9634 2.0003 34 1 5.3366 -5.0057 -0.5125 35 1 5.5927 -7.4544 0.5800 36 1 7.2019 -7.8615 2.3940 37 1 8.5603 -7.4779 1.3087 38 1 7.3990 -10.5630 -0.6703 39 1 6.3554 -6.7297 -1.6414 40 1 8.0533 -6.7999 -1.1080 41 1 6.8639 -3.1152 -2.1172 42 1 5.0930 -3.1510 -2.5238 43 1 4.9385 -0.7062 -2.4697 44 1 6.7163 -0.7748 -2.8342 45 1 5.6866 -0.1759 -0.1975 46 1 7.2863 -0.9963 -0.4590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078748572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:04 Heat of formation + Delta-G solvation = -78.092497 kcal Electronic energy + Delta-G solvation = -29418.927476 eV Core-core repulsion = 25309.087397 eV Total energy + Delta-G solvation = -4109.840079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.65503 -41.86418 -40.21960 -39.95426 -36.59403 -36.36997 -35.83187 -34.89616 -33.74147 -32.19585 -29.84388 -27.09514 -26.67754 -25.81387 -25.43101 -24.24111 -23.42344 -21.96383 -21.16178 -20.34406 -20.19227 -18.98627 -18.70173 -18.49041 -17.99720 -17.17765 -16.94657 -16.65887 -16.53494 -16.26450 -15.85173 -15.76472 -15.48601 -15.45240 -15.01716 -14.71718 -14.60255 -14.22115 -14.08223 -13.75962 -13.43196 -13.36960 -13.12442 -12.92267 -12.80745 -12.49624 -12.43590 -12.28285 -12.11009 -11.97599 -11.89814 -11.85009 -11.39799 -11.38401 -11.27104 -11.19373 -10.88858 -10.77379 -10.70919 -9.89433 -9.22631 -8.01306 -5.32738 0.41087 1.36656 1.39053 1.46150 1.54153 1.67278 1.72863 2.09899 2.48205 2.89925 3.29031 3.30648 3.41609 3.48671 3.56119 3.63211 3.77611 3.92126 3.94223 3.97131 4.07239 4.10917 4.24365 4.41743 4.57549 4.61496 4.66545 4.75149 4.78453 4.88673 4.90159 4.94800 4.99605 5.06312 5.12108 5.15487 5.20757 5.27948 5.56390 5.65668 5.67241 5.76064 5.80828 6.24600 6.29745 6.57736 6.75235 7.10425 7.23957 7.88741 8.05977 9.20408 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.002653 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.145810 B =10552.257765 C =10698.817671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.254 1.254 7 C -0.225 4.225 8 H 0.061 0.939 9 N -0.738 5.738 10 C 0.177 3.823 11 H 0.082 0.918 12 C -0.176 4.176 13 C 0.154 3.846 14 H 0.099 0.901 15 N -0.692 5.692 16 C 0.531 3.469 17 O -0.567 6.567 18 C -0.101 4.101 19 C -0.118 4.118 20 C 0.540 3.460 21 O -0.537 6.537 22 N -0.672 5.672 23 C 0.540 3.460 24 O -0.532 6.532 25 C -0.130 4.130 26 C -0.114 4.114 27 C -0.109 4.109 28 C -0.140 4.140 29 C -0.116 4.116 30 H 0.256 0.744 31 H 0.366 0.634 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.415 0.585 35 H 0.134 0.866 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.415 0.585 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.107 0.893 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.083 0.917 45 H 0.046 0.954 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.302 -14.108 -3.509 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.254 4.254 3 Si 0.772 3.228 4 H -0.203 1.203 5 H -0.227 1.227 6 H -0.179 1.179 7 C -0.356 4.356 8 H 0.079 0.921 9 N -0.379 5.379 10 C 0.068 3.932 11 H 0.100 0.900 12 C -0.218 4.218 13 C 0.047 3.953 14 H 0.117 0.883 15 N -0.342 5.342 16 C 0.318 3.682 17 O -0.445 6.445 18 C -0.123 4.123 19 C -0.158 4.158 20 C 0.331 3.669 21 O -0.412 6.412 22 N -0.336 5.336 23 C 0.330 3.670 24 O -0.406 6.406 25 C -0.169 4.169 26 C -0.116 4.116 27 C -0.146 4.146 28 C -0.177 4.177 29 C -0.154 4.154 30 H 0.065 0.935 31 H 0.201 0.799 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.252 0.748 35 H 0.152 0.848 36 H 0.137 0.863 37 H 0.150 0.850 38 H 0.255 0.745 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.126 0.874 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.101 0.899 45 H 0.065 0.935 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 20.581 -14.340 -3.000 25.263 hybrid contribution -0.709 0.704 -0.054 1.000 sum 19.872 -13.636 -3.054 24.294 Atomic orbital electron populations 1.69863 1.07085 1.26473 1.60113 1.25417 0.95945 1.00908 1.03129 0.85572 0.78681 0.80387 0.78153 1.20275 1.22724 1.17861 1.19095 0.82812 0.93351 1.40370 0.92130 1.42734 1.02213 1.04059 1.88917 1.21697 0.89439 0.88006 0.94049 0.90017 1.24135 0.97941 1.00573 0.99134 1.21350 0.98115 0.80325 0.95468 0.88303 1.45508 1.44939 1.06375 1.37354 1.20350 0.78930 0.87491 0.81455 1.90752 1.41359 1.81347 1.31070 1.21443 1.03768 0.91996 0.95073 1.21756 1.04221 0.87748 1.02100 1.21091 0.72586 0.92588 0.80674 1.90810 1.45886 1.50615 1.53856 1.44887 1.65392 1.13518 1.09823 1.21075 0.72622 0.89479 0.83840 1.90835 1.46165 1.82804 1.20803 1.22046 1.08602 0.90531 0.95730 1.23371 0.95978 0.96830 0.95471 1.22649 1.02642 0.96041 0.93296 1.22750 1.01390 0.97641 0.95954 1.22598 1.00845 0.94861 0.97058 0.93506 0.79904 0.92351 0.91014 0.74815 0.84804 0.86281 0.85007 0.74522 0.84083 0.84263 0.87446 0.91088 0.92418 0.89879 0.93489 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.83 13.97 21.65 0.30 -61.53 16 2 C -0.06 -3.58 5.50 84.86 0.47 -3.11 16 3 Si 0.94 44.24 27.74 68.60 1.90 46.14 16 4 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 6 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 7 C -0.23 -12.12 10.46 84.03 0.88 -11.24 16 8 H 0.06 3.56 8.06 -2.91 -0.02 3.54 16 9 N -0.74 -31.40 5.16 -321.09 -1.66 -33.06 16 10 C 0.18 5.65 4.28 45.38 0.19 5.85 16 11 H 0.08 2.61 8.12 -2.38 -0.02 2.59 16 12 C -0.18 -5.10 7.68 31.23 0.24 -4.86 16 13 C 0.15 3.25 4.09 45.28 0.19 3.44 16 14 H 0.10 2.22 7.50 -2.39 -0.02 2.20 16 15 N -0.69 -10.01 4.97 -441.13 -2.19 -12.20 16 16 C 0.53 7.64 7.16 87.66 0.63 8.26 16 17 O -0.57 -12.76 15.57 -3.03 -0.05 -12.81 16 18 C -0.10 -0.76 2.66 -11.38 -0.03 -0.79 16 19 C -0.12 -1.14 4.70 29.89 0.14 -1.00 16 20 C 0.54 6.96 7.74 87.72 0.68 7.64 16 21 O -0.54 -11.35 17.87 -2.86 -0.05 -11.40 16 22 N -0.67 -7.13 5.09 -428.63 -2.18 -9.31 16 23 C 0.54 5.78 7.74 87.72 0.68 6.46 16 24 O -0.53 -9.85 17.88 -2.87 -0.05 -9.90 16 25 C -0.13 -0.65 5.24 29.89 0.16 -0.49 16 26 C -0.11 -2.62 0.92 -52.21 -0.05 -2.67 16 27 C -0.11 -1.96 7.46 30.88 0.23 -1.73 16 28 C -0.14 -3.10 8.08 31.23 0.25 -2.84 16 29 C -0.12 -2.68 7.46 30.88 0.23 -2.45 16 30 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.37 15.28 3.74 -92.70 -0.35 14.93 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.41 4.22 8.17 -92.71 -0.76 3.46 16 35 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.13 1.11 7.98 -2.39 -0.02 1.09 16 38 H 0.42 4.24 8.79 -92.71 -0.81 3.43 16 39 H 0.14 0.32 7.77 -2.39 -0.02 0.30 16 40 H 0.14 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.05 1.33 6.44 -2.38 -0.02 1.31 16 46 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -78.00 376.47 -0.03 -78.03 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -0.94 Total: 25.57 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 4.88 Total: 0.46 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -5.73 Total: -116.10 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.15 Total: -34.11 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.90 Total: 46.14 kcal Total: -78.00 -0.03 -78.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078748572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.059 kcal (2) G-P(sol) polarization free energy of solvation -78.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds