Wall clock time and date at job start Tue Mar 31 2020 18:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99783 * 2 1 4 4 H 1.48508 * 109.47009 * 270.00246 * 3 2 1 5 5 H 1.48497 * 109.46891 * 29.99964 * 3 2 1 6 6 H 1.48499 * 109.47125 * 150.00224 * 3 2 1 7 7 C 1.38813 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99741 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99959 * 179.97438 * 9 7 2 11 11 H 1.09007 * 112.88483 * 26.84528 * 10 9 7 12 12 C 1.53948 * 113.66623 * 255.49431 * 10 9 7 13 13 C 1.53945 * 87.29474 * 220.69918 * 12 10 9 14 14 H 1.08997 * 113.66721 * 270.16957 * 13 12 10 15 15 N 1.46504 * 113.65714 * 139.20590 * 13 12 10 16 16 C 1.34778 * 119.99587 * 104.50666 * 15 13 12 17 17 O 1.21279 * 120.00515 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99797 * 179.97438 * 16 15 13 19 19 C 1.52982 * 109.82356 * 299.36356 * 18 16 15 20 20 C 1.50584 * 109.30221 * 184.77109 * 19 18 16 21 21 O 1.21233 * 119.36299 * 208.95663 * 20 19 18 22 22 N 1.34145 * 121.28184 * 28.67708 * 20 19 18 23 23 C 1.34143 * 122.58595 * 359.75832 * 22 20 19 24 24 O 1.21217 * 119.35926 * 180.52104 * 23 22 20 25 25 C 1.50589 * 121.28035 * 0.49268 * 23 22 20 26 26 C 1.52906 * 113.74394 * 158.26476 * 10 9 7 27 27 C 1.52905 * 121.14085 * 265.10971 * 26 10 9 28 28 C 1.53947 * 86.78594 * 100.81709 * 27 26 10 29 29 C 1.52908 * 121.13850 * 13.67055 * 26 10 9 30 30 H 0.96997 * 120.00155 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00391 * 0.02562 * 9 7 2 32 32 H 1.09007 * 113.57430 * 106.09416 * 12 10 9 33 33 H 1.08997 * 113.65147 * 335.32173 * 12 10 9 34 34 H 0.96991 * 120.00333 * 284.50232 * 15 13 12 35 35 H 1.08997 * 109.62339 * 59.63406 * 18 16 15 36 36 H 1.09003 * 109.56881 * 64.75578 * 19 18 16 37 37 H 1.08995 * 109.33862 * 304.65367 * 19 18 16 38 38 H 0.96999 * 118.70970 * 179.72897 * 22 20 19 39 39 H 1.09001 * 109.52267 * 90.83636 * 25 23 22 40 40 H 1.08999 * 109.52735 * 210.96435 * 25 23 22 41 41 H 1.08998 * 113.66329 * 215.29320 * 27 26 10 42 42 H 1.09007 * 113.66211 * 346.34388 * 27 26 10 43 43 H 1.09004 * 113.58129 * 270.14045 * 28 27 26 44 44 H 1.08994 * 113.58244 * 139.33901 * 28 27 26 45 45 H 1.09005 * 113.65829 * 13.65338 * 29 26 10 46 46 H 1.09000 * 113.66254 * 144.61481 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4002 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 1 3.0465 -3.5760 0.4511 12 6 2.0603 -4.3679 -1.3671 13 6 1.8554 -5.6861 -0.5988 14 1 2.7866 -6.1766 -0.3154 15 7 0.9033 -6.5975 -1.2385 16 6 1.3504 -7.6821 -1.9020 17 8 2.5409 -7.9034 -1.9699 18 6 0.3710 -8.6199 -2.5596 19 6 -0.5662 -9.2135 -1.5061 20 6 -1.4616 -10.2352 -2.1556 21 8 -2.5666 -10.4338 -1.6980 22 7 -1.0626 -10.9260 -3.2340 23 6 0.1412 -10.7509 -3.7994 24 8 0.4379 -11.4004 -4.7789 25 6 1.1310 -9.7629 -3.2410 26 6 1.2405 -4.8403 0.5167 27 6 1.3240 -5.2790 1.9791 28 6 -0.0047 -4.5303 2.1893 29 6 -0.2756 -4.7392 0.6883 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 3.0165 -4.3103 -1.8871 33 1 1.2167 -4.0976 -2.0021 34 1 -0.0488 -6.4204 -1.1845 35 1 -0.2147 -8.0766 -3.3011 36 1 -1.1743 -8.4208 -1.0702 37 1 0.0252 -9.6913 -0.7251 38 1 -1.6682 -11.5780 -3.6200 39 1 1.7707 -10.2604 -2.5121 40 1 1.7428 -9.3634 -4.0499 41 1 1.2452 -6.3572 2.1176 42 1 2.1631 -4.8412 2.5200 43 1 0.1235 -3.4842 2.4677 44 1 -0.7051 -5.0582 2.8364 45 1 -0.7143 -3.8703 0.1978 46 1 -0.8041 -5.6654 0.4624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078748573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:08 Heat of formation + Delta-G solvation = -56.278128 kcal Electronic energy + Delta-G solvation = -29318.130818 eV Core-core repulsion = 25209.236681 eV Total energy + Delta-G solvation = -4108.894137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.03110 -40.71709 -39.30709 -39.26232 -35.89342 -34.99250 -34.37752 -34.14501 -32.48316 -29.97371 -29.30431 -26.09145 -25.59037 -24.30715 -24.21883 -23.65746 -22.14959 -20.60210 -20.43479 -19.83763 -18.31748 -18.06955 -17.81637 -17.56366 -16.88343 -16.32486 -16.26240 -15.65601 -15.19143 -15.09347 -14.96970 -14.84536 -14.61972 -14.39915 -14.01043 -13.86859 -13.09972 -12.91503 -12.84867 -12.56829 -12.18618 -12.01919 -11.94664 -11.80159 -11.60221 -11.31820 -11.26065 -10.98516 -10.87817 -10.78665 -10.73285 -10.68470 -10.26379 -10.11364 -10.10222 -9.97106 -9.73320 -9.52016 -8.91900 -8.82671 -7.04083 -5.86016 -3.14610 1.00425 2.21173 2.27257 2.36445 2.95017 3.38554 3.42953 3.44706 3.45542 3.84298 4.00992 4.13044 4.42077 4.52060 4.63917 4.70798 4.81169 4.83290 4.96591 4.98723 5.13016 5.17100 5.21312 5.35884 5.37210 5.52042 5.60194 5.76658 5.80841 5.88946 5.90980 5.97969 6.11571 6.25679 6.29924 6.31806 6.43038 6.44517 6.51733 6.77081 6.82595 6.85641 6.96662 7.31918 7.40336 7.63997 8.02071 8.32836 9.44787 10.00550 10.35315 11.36207 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.002527 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.411005 B =11076.095166 C =11506.404477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.706 5.706 10 C 0.192 3.808 11 H 0.080 0.920 12 C -0.174 4.174 13 C 0.130 3.870 14 H 0.111 0.889 15 N -0.706 5.706 16 C 0.521 3.479 17 O -0.534 6.534 18 C -0.116 4.116 19 C -0.136 4.136 20 C 0.530 3.470 21 O -0.497 6.497 22 N -0.676 5.676 23 C 0.528 3.472 24 O -0.498 6.498 25 C -0.122 4.122 26 C -0.118 4.118 27 C -0.126 4.126 28 C -0.130 4.130 29 C -0.118 4.118 30 H 0.256 0.744 31 H 0.387 0.613 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.400 0.600 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.413 0.587 39 H 0.123 0.877 40 H 0.124 0.876 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.784 -20.025 -1.683 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.345 5.345 10 C 0.079 3.921 11 H 0.098 0.902 12 C -0.216 4.216 13 C 0.025 3.975 14 H 0.129 0.871 15 N -0.356 5.356 16 C 0.306 3.694 17 O -0.410 6.410 18 C -0.138 4.138 19 C -0.176 4.176 20 C 0.319 3.681 21 O -0.369 6.369 22 N -0.342 5.342 23 C 0.316 3.684 24 O -0.370 6.370 25 C -0.162 4.162 26 C -0.120 4.120 27 C -0.164 4.164 28 C -0.168 4.168 29 C -0.155 4.155 30 H 0.066 0.934 31 H 0.222 0.778 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.236 0.764 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.253 0.747 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.091 -20.259 -1.881 20.375 hybrid contribution -0.673 0.735 -0.275 1.034 sum -1.764 -19.524 -2.156 19.721 Atomic orbital electron populations 1.69643 1.05112 1.25820 1.57402 1.24736 0.95502 0.97729 1.02682 0.86205 0.78709 0.83795 0.77555 1.21697 1.21787 1.20711 1.19282 0.91121 0.84078 1.43032 0.91056 1.42337 1.05817 0.99455 1.86901 1.21052 0.94512 0.84382 0.92123 0.90185 1.24286 1.01799 0.94937 1.00625 1.22360 0.92789 0.88088 0.94219 0.87119 1.46016 1.10907 1.24920 1.53707 1.19972 0.89004 0.81532 0.78916 1.90742 1.16418 1.74103 1.59788 1.21495 0.96993 0.96725 0.98578 1.21919 0.98002 0.98717 0.98957 1.20760 0.87487 0.81004 0.78876 1.90831 1.20664 1.64732 1.60674 1.44905 1.18748 1.40580 1.29997 1.20984 0.81666 0.83083 0.82627 1.90811 1.75932 1.45925 1.24372 1.21781 0.96733 0.93800 1.03903 1.23571 0.97087 0.98041 0.93324 1.22713 0.98569 0.99171 0.95907 1.22733 0.96658 1.01657 0.95736 1.22444 0.94246 1.01297 0.97560 0.93428 0.77754 0.92060 0.90121 0.76436 0.86761 0.85985 0.86173 0.74723 0.85923 0.85759 0.90946 0.91428 0.89111 0.92411 0.90203 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.67 13.06 55.49 0.72 -25.94 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.24 -6.36 9.98 -15.06 -0.15 -6.51 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 N -0.71 -16.01 5.35 -52.99 -0.28 -16.29 16 10 C 0.19 3.41 4.35 -67.48 -0.29 3.12 16 11 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 12 C -0.17 -2.75 7.68 -25.75 -0.20 -2.95 16 13 C 0.13 1.66 4.08 -67.48 -0.28 1.38 16 14 H 0.11 1.50 7.54 -51.93 -0.39 1.11 16 15 N -0.71 -6.88 5.21 -53.37 -0.28 -7.16 16 16 C 0.52 4.97 7.17 -10.98 -0.08 4.89 16 17 O -0.53 -7.06 15.59 5.56 0.09 -6.97 16 18 C -0.12 -0.69 2.64 -91.65 -0.24 -0.93 16 19 C -0.14 -0.68 5.23 -27.95 -0.15 -0.82 16 20 C 0.53 3.72 7.75 -11.32 -0.09 3.63 16 21 O -0.50 -5.25 17.88 5.60 0.10 -5.15 16 22 N -0.68 -4.40 5.09 -11.75 -0.06 -4.46 16 23 C 0.53 4.00 7.74 -11.32 -0.09 3.92 16 24 O -0.50 -5.58 17.87 5.61 0.10 -5.48 16 25 C -0.12 -0.79 4.70 -27.81 -0.13 -0.92 16 26 C -0.12 -1.62 1.06 -154.72 -0.16 -1.78 16 27 C -0.13 -1.60 7.84 -26.29 -0.21 -1.81 16 28 C -0.13 -1.78 8.08 -25.75 -0.21 -1.99 16 29 C -0.12 -1.54 6.77 -26.28 -0.18 -1.72 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.39 9.22 5.87 -40.82 -0.24 8.98 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.40 3.18 6.51 -40.82 -0.27 2.91 16 35 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.12 0.50 7.77 -51.93 -0.40 0.09 16 37 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.41 2.45 8.79 -40.82 -0.36 2.09 16 39 H 0.12 0.74 7.99 -51.93 -0.41 0.32 16 40 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.91 8.14 -51.92 -0.42 0.48 16 43 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 1.26 6.43 -51.93 -0.33 0.93 16 46 H 0.07 0.71 6.96 -51.93 -0.36 0.35 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -32.99 376.89 -8.04 -41.03 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -6.54 Total: 11.08 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -2.54 Total: -2.88 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.10 Total: -53.85 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.29 Total: -17.60 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.99 -8.04 -41.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078748573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.251 kcal (2) G-P(sol) polarization free energy of solvation -32.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds