Wall clock time and date at job start Tue Mar 31 2020 18:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99783 * 2 1 4 4 H 1.48508 * 109.47009 * 270.00246 * 3 2 1 5 5 H 1.48497 * 109.46891 * 29.99964 * 3 2 1 6 6 H 1.48499 * 109.47125 * 150.00224 * 3 2 1 7 7 C 1.38813 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99741 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99959 * 179.97438 * 9 7 2 11 11 H 1.09007 * 112.88483 * 26.84528 * 10 9 7 12 12 C 1.53948 * 113.66623 * 255.49431 * 10 9 7 13 13 C 1.53945 * 87.29474 * 220.69918 * 12 10 9 14 14 H 1.08997 * 113.66721 * 270.16957 * 13 12 10 15 15 N 1.46504 * 113.65714 * 139.20590 * 13 12 10 16 16 C 1.34778 * 119.99587 * 104.50666 * 15 13 12 17 17 O 1.21279 * 120.00515 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99797 * 179.97438 * 16 15 13 19 19 C 1.52982 * 109.82356 * 299.36356 * 18 16 15 20 20 C 1.50584 * 109.30221 * 184.77109 * 19 18 16 21 21 O 1.21233 * 119.36299 * 208.95663 * 20 19 18 22 22 N 1.34145 * 121.28184 * 28.67708 * 20 19 18 23 23 C 1.34143 * 122.58595 * 359.75832 * 22 20 19 24 24 O 1.21217 * 119.35926 * 180.52104 * 23 22 20 25 25 C 1.50589 * 121.28035 * 0.49268 * 23 22 20 26 26 C 1.52906 * 113.74394 * 158.26476 * 10 9 7 27 27 C 1.52905 * 121.14085 * 265.10971 * 26 10 9 28 28 C 1.53947 * 86.78594 * 100.81709 * 27 26 10 29 29 C 1.52908 * 121.13850 * 13.67055 * 26 10 9 30 30 H 0.96997 * 120.00155 * 359.97438 * 1 2 3 31 31 H 0.97000 * 120.00391 * 0.02562 * 9 7 2 32 32 H 1.09007 * 113.57430 * 106.09416 * 12 10 9 33 33 H 1.08997 * 113.65147 * 335.32173 * 12 10 9 34 34 H 0.96991 * 120.00333 * 284.50232 * 15 13 12 35 35 H 1.08997 * 109.62339 * 59.63406 * 18 16 15 36 36 H 1.09003 * 109.56881 * 64.75578 * 19 18 16 37 37 H 1.08995 * 109.33862 * 304.65367 * 19 18 16 38 38 H 0.96999 * 118.70970 * 179.72897 * 22 20 19 39 39 H 1.09001 * 109.52267 * 90.83636 * 25 23 22 40 40 H 1.08999 * 109.52735 * 210.96435 * 25 23 22 41 41 H 1.08998 * 113.66329 * 215.29320 * 27 26 10 42 42 H 1.09007 * 113.66211 * 346.34388 * 27 26 10 43 43 H 1.09004 * 113.58129 * 270.14045 * 28 27 26 44 44 H 1.08994 * 113.58244 * 139.33901 * 28 27 26 45 45 H 1.09005 * 113.65829 * 13.65338 * 29 26 10 46 46 H 1.09000 * 113.66254 * 144.61481 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4002 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 1 3.0465 -3.5760 0.4511 12 6 2.0603 -4.3679 -1.3671 13 6 1.8554 -5.6861 -0.5988 14 1 2.7866 -6.1766 -0.3154 15 7 0.9033 -6.5975 -1.2385 16 6 1.3504 -7.6821 -1.9020 17 8 2.5409 -7.9034 -1.9699 18 6 0.3710 -8.6199 -2.5596 19 6 -0.5662 -9.2135 -1.5061 20 6 -1.4616 -10.2352 -2.1556 21 8 -2.5666 -10.4338 -1.6980 22 7 -1.0626 -10.9260 -3.2340 23 6 0.1412 -10.7509 -3.7994 24 8 0.4379 -11.4004 -4.7789 25 6 1.1310 -9.7629 -3.2410 26 6 1.2405 -4.8403 0.5167 27 6 1.3240 -5.2790 1.9791 28 6 -0.0047 -4.5303 2.1893 29 6 -0.2756 -4.7392 0.6883 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 3.0165 -4.3103 -1.8871 33 1 1.2167 -4.0976 -2.0021 34 1 -0.0488 -6.4204 -1.1845 35 1 -0.2147 -8.0766 -3.3011 36 1 -1.1743 -8.4208 -1.0702 37 1 0.0252 -9.6913 -0.7251 38 1 -1.6682 -11.5780 -3.6200 39 1 1.7707 -10.2604 -2.5121 40 1 1.7428 -9.3634 -4.0499 41 1 1.2452 -6.3572 2.1176 42 1 2.1631 -4.8412 2.5200 43 1 0.1235 -3.4842 2.4677 44 1 -0.7051 -5.0582 2.8364 45 1 -0.7143 -3.8703 0.1978 46 1 -0.8041 -5.6654 0.4624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078748573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:07 Heat of formation + Delta-G solvation = -80.947657 kcal Electronic energy + Delta-G solvation = -29319.200569 eV Core-core repulsion = 25209.236681 eV Total energy + Delta-G solvation = -4109.963888 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.65555 -41.80371 -40.19922 -39.95884 -36.58025 -36.21960 -35.70810 -34.91245 -33.85177 -31.69741 -29.85600 -27.04876 -26.70861 -25.84413 -25.36965 -24.25563 -23.46964 -21.73037 -21.35480 -20.34018 -19.60157 -18.98297 -18.70739 -18.44093 -18.01240 -17.36001 -17.00332 -16.46201 -16.35194 -16.23803 -15.97929 -15.74734 -15.45109 -15.43086 -15.06517 -14.75218 -14.60637 -14.22306 -13.74378 -13.51742 -13.36143 -13.13690 -13.05591 -12.84584 -12.70817 -12.48961 -12.31273 -12.27658 -12.18394 -12.02089 -11.95209 -11.82235 -11.39936 -11.38585 -11.28858 -11.14467 -10.93311 -10.72434 -10.64618 -9.84291 -8.91755 -7.92635 -5.18613 0.40524 1.48485 1.48981 1.55427 1.56957 1.67619 1.72722 2.16269 2.58290 2.89209 3.31356 3.38641 3.44298 3.55440 3.58887 3.68660 3.81749 3.96121 3.98953 4.08063 4.09944 4.19319 4.34319 4.41059 4.56379 4.63431 4.71264 4.77103 4.80827 4.84813 4.89389 4.93045 4.99606 5.08937 5.16771 5.20622 5.28101 5.40007 5.54107 5.56911 5.69136 5.75379 5.76526 6.28975 6.30553 6.60131 6.74806 7.25209 7.38158 8.15732 8.39267 9.30291 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.002527 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.411005 B =11076.095166 C =11506.404477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.964 3.036 4 H -0.291 1.291 5 H -0.297 1.297 6 H -0.272 1.272 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.169 3.831 11 H 0.071 0.929 12 C -0.171 4.171 13 C 0.155 3.845 14 H 0.111 0.889 15 N -0.698 5.698 16 C 0.528 3.472 17 O -0.568 6.568 18 C -0.102 4.102 19 C -0.130 4.130 20 C 0.540 3.460 21 O -0.531 6.531 22 N -0.671 5.671 23 C 0.541 3.459 24 O -0.536 6.536 25 C -0.118 4.118 26 C -0.109 4.109 27 C -0.115 4.115 28 C -0.134 4.134 29 C -0.111 4.111 30 H 0.250 0.750 31 H 0.379 0.621 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.413 0.587 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.415 0.585 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.105 0.895 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.082 0.918 45 H 0.048 0.952 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 -21.964 -1.257 22.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.794 3.206 4 H -0.218 1.218 5 H -0.224 1.224 6 H -0.197 1.197 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.356 5.356 10 C 0.058 3.942 11 H 0.089 0.911 12 C -0.213 4.213 13 C 0.049 3.951 14 H 0.129 0.871 15 N -0.349 5.349 16 C 0.314 3.686 17 O -0.447 6.447 18 C -0.123 4.123 19 C -0.169 4.169 20 C 0.331 3.669 21 O -0.406 6.406 22 N -0.336 5.336 23 C 0.331 3.669 24 O -0.411 6.411 25 C -0.158 4.158 26 C -0.111 4.111 27 C -0.152 4.152 28 C -0.171 4.171 29 C -0.148 4.148 30 H 0.059 0.941 31 H 0.213 0.787 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.250 0.750 35 H 0.151 0.849 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.255 0.745 39 H 0.149 0.851 40 H 0.137 0.863 41 H 0.123 0.877 42 H 0.075 0.925 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.067 0.933 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.148 -22.241 -1.453 22.318 hybrid contribution -0.589 1.268 -0.422 1.460 sum -1.737 -20.973 -1.875 21.129 Atomic orbital electron populations 1.69779 1.06325 1.25859 1.59690 1.25418 0.96275 1.00613 1.04046 0.85271 0.77815 0.80245 0.77229 1.21798 1.22408 1.19681 1.19636 0.91392 0.85488 1.40622 0.90984 1.42442 1.05588 1.00310 1.87259 1.21366 0.94684 0.83939 0.94178 0.91079 1.24114 1.01025 0.96900 0.99247 1.21881 0.93303 0.87304 0.92565 0.87125 1.45844 1.11038 1.24479 1.53533 1.20394 0.88943 0.81304 0.77936 1.90746 1.18250 1.74881 1.60823 1.21393 0.96212 0.95812 0.98931 1.21984 0.97641 0.98650 0.98670 1.21040 0.87011 0.80672 0.78214 1.90835 1.22228 1.65919 1.61578 1.44877 1.18458 1.40415 1.29827 1.21080 0.81665 0.82434 0.81727 1.90807 1.76632 1.47523 1.26162 1.21755 0.96439 0.93678 1.03956 1.23299 0.97327 0.95746 0.94726 1.22720 0.97479 1.00814 0.94196 1.22655 0.98115 0.99753 0.96623 1.22500 0.93595 1.02038 0.96709 0.94135 0.78653 0.92819 0.91162 0.74963 0.84895 0.84149 0.84389 0.74490 0.85068 0.86268 0.87681 0.92493 0.93196 0.89932 0.93288 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.83 13.06 21.65 0.28 -56.55 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 3 Si 0.96 45.14 29.55 68.60 2.03 47.17 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.24 -12.71 9.98 84.04 0.84 -11.88 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 9 N -0.72 -33.31 5.35 -321.55 -1.72 -35.03 16 10 C 0.17 6.01 4.35 45.28 0.20 6.21 16 11 H 0.07 2.62 8.12 -2.38 -0.02 2.60 16 12 C -0.17 -5.30 7.68 31.23 0.24 -5.06 16 13 C 0.16 3.60 4.08 45.28 0.18 3.78 16 14 H 0.11 2.70 7.54 -2.39 -0.02 2.68 16 15 N -0.70 -11.12 5.21 -441.15 -2.30 -13.42 16 16 C 0.53 8.24 7.17 87.66 0.63 8.87 16 17 O -0.57 -13.51 15.59 -3.03 -0.05 -13.55 16 18 C -0.10 -0.84 2.64 -11.46 -0.03 -0.87 16 19 C -0.13 -0.74 5.23 29.81 0.16 -0.59 16 20 C 0.54 6.00 7.75 87.72 0.68 6.68 16 21 O -0.53 -9.96 17.88 -2.88 -0.05 -10.01 16 22 N -0.67 -7.32 5.09 -428.63 -2.18 -9.50 16 23 C 0.54 7.17 7.74 87.72 0.68 7.85 16 24 O -0.54 -11.49 17.87 -2.84 -0.05 -11.54 16 25 C -0.12 -1.22 4.70 29.90 0.14 -1.08 16 26 C -0.11 -2.81 1.06 -52.32 -0.06 -2.86 16 27 C -0.11 -2.62 7.84 30.88 0.24 -2.37 16 28 C -0.13 -3.43 8.08 31.23 0.25 -3.18 16 29 C -0.11 -2.67 6.77 30.88 0.21 -2.46 16 30 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 31 H 0.38 18.66 5.87 -92.71 -0.54 18.12 16 32 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 34 H 0.41 4.73 6.51 -92.72 -0.60 4.13 16 35 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.14 0.40 7.77 -2.39 -0.02 0.39 16 37 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.42 4.32 8.79 -92.71 -0.81 3.51 16 39 H 0.13 1.20 7.99 -2.39 -0.02 1.18 16 40 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 43 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.05 1.53 6.43 -2.38 -0.02 1.51 16 46 H 0.11 1.75 6.96 -2.39 -0.02 1.74 16 Total: -1.00 -74.07 376.89 -0.13 -74.20 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.92 Total: 28.68 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 4.83 Total: -0.44 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -5.92 Total: -114.50 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.15 Total: -35.11 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -74.07 -0.13 -74.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078748573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.750 kcal (2) G-P(sol) polarization free energy of solvation -74.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds