Wall clock time and date at job start Tue Mar 31 2020 18:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48500 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47193 * 299.99966 * 3 2 1 6 6 H 1.48503 * 109.46551 * 60.00138 * 3 2 1 7 7 C 1.38814 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00078 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.46492 * 119.99826 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.95638 * 336.40672 * 10 9 7 12 12 C 1.53957 * 113.65902 * 107.81807 * 10 9 7 13 13 C 1.53948 * 87.29686 * 89.73656 * 12 10 9 14 14 H 1.08998 * 113.66676 * 139.20284 * 13 12 10 15 15 N 1.46505 * 113.74574 * 270.25087 * 13 12 10 16 16 C 1.34782 * 119.99630 * 252.22883 * 15 13 12 17 17 O 1.21278 * 120.00273 * 359.97438 * 16 15 13 18 18 C 1.50696 * 119.99685 * 179.97438 * 16 15 13 19 19 C 1.53245 * 109.62465 * 299.07686 * 18 16 15 20 20 C 1.50583 * 109.17056 * 184.67857 * 19 18 16 21 21 O 1.21229 * 119.35890 * 209.07267 * 20 19 18 22 22 N 1.34144 * 121.28051 * 29.07787 * 20 19 18 23 23 C 1.34140 * 122.58879 * 359.45324 * 22 20 19 24 24 O 1.21228 * 119.35894 * 180.54516 * 23 22 20 25 25 C 1.50588 * 121.28055 * 0.56569 * 23 22 20 26 26 C 1.52909 * 86.78501 * 24.73264 * 13 12 10 27 27 C 1.52910 * 121.13680 * 100.81909 * 26 13 12 28 28 C 1.53949 * 86.78077 * 100.82535 * 27 26 13 29 29 C 1.52905 * 121.13655 * 209.38636 * 26 13 12 30 30 H 0.97009 * 120.00173 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99527 * 0.02562 * 9 7 2 32 32 H 1.09001 * 113.57949 * 204.33552 * 12 10 9 33 33 H 1.08996 * 113.58143 * 335.13213 * 12 10 9 34 34 H 0.96996 * 120.00440 * 72.22910 * 15 13 12 35 35 H 1.09008 * 109.62143 * 59.63264 * 18 16 15 36 36 H 1.09004 * 109.51905 * 304.57106 * 19 18 16 37 37 H 1.09000 * 109.52205 * 64.75754 * 19 18 16 38 38 H 0.97000 * 118.70067 * 179.43167 * 22 20 19 39 39 H 1.09000 * 109.52386 * 210.97777 * 25 23 22 40 40 H 1.09004 * 109.51917 * 90.78856 * 25 23 22 41 41 H 1.09006 * 113.66074 * 215.29190 * 27 26 13 42 42 H 1.08994 * 113.66448 * 346.35155 * 27 26 13 43 43 H 1.09009 * 113.57633 * 270.12923 * 28 27 26 44 44 H 1.09000 * 113.65567 * 139.34741 * 28 27 26 45 45 H 1.08990 * 113.66878 * 13.64950 * 29 26 13 46 46 H 1.09008 * 113.66523 * 144.70973 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0668 -3.5649 -0.4041 12 6 1.9943 -4.4082 1.3406 13 6 0.7251 -5.0994 0.8101 14 1 0.6691 -6.1598 1.0560 15 7 -0.5121 -4.3773 1.1170 16 6 -1.3617 -4.8603 2.0452 17 8 -1.1023 -5.8928 2.6259 18 6 -2.6340 -4.1171 2.3613 19 6 -2.2957 -2.7191 2.8899 20 6 -3.5662 -2.0285 3.3101 21 8 -3.6333 -0.8196 3.2502 22 7 -4.6250 -2.7251 3.7495 23 6 -4.6253 -4.0640 3.8320 24 8 -5.6186 -4.6348 4.2283 25 6 -3.4156 -4.8716 3.4422 26 6 1.2651 -4.8227 -0.5935 27 6 1.9573 -5.9187 -1.4046 28 6 0.6286 -6.0732 -2.1667 29 6 0.3201 -4.6159 -1.7776 30 1 -0.4851 0.8401 -0.0004 31 1 0.3554 -2.3881 -0.0005 32 1 2.8292 -5.0910 1.4981 33 1 1.8115 -3.7580 2.1960 34 1 -0.7198 -3.5516 0.6523 35 1 -3.2425 -4.0336 1.4607 36 1 -1.6278 -2.8055 3.7470 37 1 -1.8091 -2.1406 2.1046 38 1 -5.4217 -2.2415 4.0185 39 1 -3.7333 -5.8392 3.0536 40 1 -2.7797 -5.0196 4.3151 41 1 2.7767 -5.5533 -2.0237 42 1 2.2278 -6.7945 -0.8150 43 1 -0.0504 -6.7976 -1.7169 44 1 0.7543 -6.2208 -3.2393 45 1 -0.7171 -4.4511 -1.4861 46 1 0.6794 -3.8844 -2.5016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078748575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:14 Heat of formation + Delta-G solvation = -52.685831 kcal Electronic energy + Delta-G solvation = -30324.809120 eV Core-core repulsion = 26216.070757 eV Total energy + Delta-G solvation = -4108.738363 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67897 -40.71199 -39.04201 -38.89763 -35.56382 -35.35094 -33.96204 -33.72549 -32.30120 -29.90079 -28.91701 -25.90528 -25.48200 -24.40771 -24.03299 -23.28954 -22.61425 -20.39149 -20.14783 -19.47668 -18.44189 -17.86493 -17.47377 -17.18174 -16.87069 -15.97835 -15.74290 -15.37807 -15.20196 -14.80943 -14.79593 -14.60356 -14.38845 -14.10527 -13.92714 -13.56917 -13.19507 -13.00149 -12.58966 -12.53334 -12.17342 -12.02452 -11.61123 -11.57286 -11.50659 -11.46209 -11.00786 -10.94511 -10.89573 -10.74449 -10.37344 -10.33982 -10.23275 -10.15364 -9.92531 -9.85783 -9.62549 -9.42882 -8.94351 -8.69847 -7.11898 -5.92896 -3.21213 1.37665 2.52406 2.62175 2.68146 3.15214 3.36544 3.43261 3.45393 3.82763 4.21600 4.34149 4.43501 4.50349 4.67016 4.78375 4.87867 4.92239 5.02638 5.07842 5.21692 5.24477 5.33039 5.43000 5.55340 5.63198 5.73739 5.79055 5.80298 5.85224 5.89754 5.94010 6.03818 6.06600 6.14613 6.24975 6.33103 6.52643 6.58786 6.66670 6.69908 6.84605 6.96034 7.21672 7.61117 7.66284 7.69992 8.24195 8.29543 9.37898 9.90673 10.24499 11.29726 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008699 B = 0.004886 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.826070 B = 5729.382671 C = 8252.594653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.006 4.006 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.245 4.245 8 H 0.073 0.927 9 N -0.699 5.699 10 C 0.179 3.821 11 H 0.066 0.934 12 C -0.185 4.185 13 C 0.150 3.850 14 H 0.093 0.907 15 N -0.693 5.693 16 C 0.527 3.473 17 O -0.543 6.543 18 C -0.113 4.113 19 C -0.138 4.138 20 C 0.528 3.472 21 O -0.485 6.485 22 N -0.677 5.677 23 C 0.530 3.470 24 O -0.507 6.507 25 C -0.122 4.122 26 C -0.134 4.134 27 C -0.104 4.104 28 C -0.142 4.142 29 C -0.115 4.115 30 H 0.258 0.742 31 H 0.378 0.622 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.409 0.591 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.137 0.863 38 H 0.411 0.589 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 -11.367 1.619 11.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.338 5.338 10 C 0.067 3.933 11 H 0.084 0.916 12 C -0.227 4.227 13 C 0.044 3.956 14 H 0.111 0.889 15 N -0.345 5.345 16 C 0.312 3.688 17 O -0.420 6.420 18 C -0.135 4.135 19 C -0.178 4.178 20 C 0.316 3.684 21 O -0.356 6.356 22 N -0.343 5.343 23 C 0.319 3.681 24 O -0.380 6.380 25 C -0.161 4.161 26 C -0.136 4.136 27 C -0.142 4.142 28 C -0.180 4.180 29 C -0.152 4.152 30 H 0.068 0.932 31 H 0.213 0.787 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.248 0.752 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.250 0.750 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.104 0.896 42 H 0.084 0.916 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.496 -11.661 2.117 12.357 hybrid contribution -0.328 1.654 -0.045 1.687 sum -3.824 -10.007 2.071 10.911 Atomic orbital electron populations 1.69575 1.05002 1.26064 1.57175 1.24696 0.95557 0.97647 1.02402 0.86131 0.78803 0.84035 0.77250 1.20591 1.21853 1.21795 1.19290 0.91187 0.83669 1.43406 0.90886 1.42068 1.05100 0.99413 1.87250 1.21051 0.94996 0.85093 0.92152 0.91593 1.24294 0.96253 1.00242 1.01930 1.21469 0.83687 0.95988 0.94411 0.88881 1.45773 1.20842 1.27621 1.40218 1.19973 0.84196 0.85078 0.79591 1.90699 1.76079 1.24153 1.51104 1.21505 0.96451 0.94804 1.00739 1.22029 0.95063 0.94700 1.06009 1.20838 0.84751 0.87703 0.75111 1.90851 1.81818 1.13983 1.48940 1.44940 1.18850 1.09100 1.61446 1.20936 0.89947 0.81735 0.75529 1.90783 1.34394 1.69874 1.42950 1.21768 0.93796 0.99533 1.01040 1.23469 0.98661 0.98624 0.92860 1.22477 0.96806 0.97190 0.97698 1.22867 0.97660 0.97739 0.99689 1.22504 0.99007 0.96068 0.97663 0.93233 0.78731 0.90393 0.90890 0.75189 0.86861 0.86420 0.84513 0.74978 0.86107 0.86064 0.89634 0.91645 0.90797 0.91934 0.92086 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.06 13.06 55.49 0.72 -24.34 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.09 9.97 -15.05 -0.15 -6.24 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.70 -14.89 4.98 -52.99 -0.26 -15.15 16 10 C 0.18 3.11 4.36 -67.48 -0.29 2.82 16 11 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 12 C -0.19 -2.91 7.69 -25.75 -0.20 -3.10 16 13 C 0.15 2.17 4.12 -67.48 -0.28 1.89 16 14 H 0.09 1.36 7.46 -51.93 -0.39 0.98 16 15 N -0.69 -9.73 4.61 -53.37 -0.25 -9.97 16 16 C 0.53 6.94 7.16 -10.99 -0.08 6.87 16 17 O -0.54 -8.46 15.55 5.56 0.09 -8.37 16 18 C -0.11 -1.18 2.66 -91.52 -0.24 -1.42 16 19 C -0.14 -1.61 5.24 -27.81 -0.15 -1.76 16 20 C 0.53 6.67 7.74 -11.33 -0.09 6.58 16 21 O -0.49 -8.18 17.88 5.60 0.10 -8.08 16 22 N -0.68 -7.19 5.09 -11.75 -0.06 -7.25 16 23 C 0.53 5.78 7.74 -11.32 -0.09 5.69 16 24 O -0.51 -7.00 17.88 5.60 0.10 -6.90 16 25 C -0.12 -1.18 4.70 -27.81 -0.13 -1.31 16 26 C -0.13 -1.89 0.78 -154.71 -0.12 -2.02 16 27 C -0.10 -1.23 7.84 -26.28 -0.21 -1.44 16 28 C -0.14 -1.65 8.08 -25.75 -0.21 -1.86 16 29 C -0.11 -1.61 7.27 -26.28 -0.19 -1.80 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.38 8.15 5.34 -40.82 -0.22 7.93 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 34 H 0.41 6.16 5.53 -40.82 -0.23 5.93 16 35 H 0.11 1.02 8.14 -51.92 -0.42 0.59 16 36 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.14 1.92 7.78 -51.93 -0.40 1.51 16 38 H 0.41 3.99 8.79 -40.82 -0.36 3.63 16 39 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.12 1.13 7.98 -51.93 -0.41 0.71 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.86 7.58 -51.93 -0.39 0.46 16 46 H 0.09 1.37 8.14 -51.92 -0.42 0.95 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -30.63 376.88 -8.01 -38.64 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: -6.60 Total: 17.02 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.52 Total: 2.64 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.15 Total: -56.72 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.29 Total: -23.35 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.63 -8.01 -38.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078748575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.045 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds