Wall clock time and date at job start Tue Mar 31 2020 18:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48500 * 109.47143 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47193 * 299.99966 * 3 2 1 6 6 H 1.48503 * 109.46551 * 60.00138 * 3 2 1 7 7 C 1.38814 * 119.99902 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00078 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.46492 * 119.99826 * 179.97438 * 9 7 2 11 11 H 1.08997 * 112.95638 * 336.40672 * 10 9 7 12 12 C 1.53957 * 113.65902 * 107.81807 * 10 9 7 13 13 C 1.53948 * 87.29686 * 89.73656 * 12 10 9 14 14 H 1.08998 * 113.66676 * 139.20284 * 13 12 10 15 15 N 1.46505 * 113.74574 * 270.25087 * 13 12 10 16 16 C 1.34782 * 119.99630 * 252.22883 * 15 13 12 17 17 O 1.21278 * 120.00273 * 359.97438 * 16 15 13 18 18 C 1.50696 * 119.99685 * 179.97438 * 16 15 13 19 19 C 1.53245 * 109.62465 * 299.07686 * 18 16 15 20 20 C 1.50583 * 109.17056 * 184.67857 * 19 18 16 21 21 O 1.21229 * 119.35890 * 209.07267 * 20 19 18 22 22 N 1.34144 * 121.28051 * 29.07787 * 20 19 18 23 23 C 1.34140 * 122.58879 * 359.45324 * 22 20 19 24 24 O 1.21228 * 119.35894 * 180.54516 * 23 22 20 25 25 C 1.50588 * 121.28055 * 0.56569 * 23 22 20 26 26 C 1.52909 * 86.78501 * 24.73264 * 13 12 10 27 27 C 1.52910 * 121.13680 * 100.81909 * 26 13 12 28 28 C 1.53949 * 86.78077 * 100.82535 * 27 26 13 29 29 C 1.52905 * 121.13655 * 209.38636 * 26 13 12 30 30 H 0.97009 * 120.00173 * 0.02562 * 1 2 3 31 31 H 0.97003 * 119.99527 * 0.02562 * 9 7 2 32 32 H 1.09001 * 113.57949 * 204.33552 * 12 10 9 33 33 H 1.08996 * 113.58143 * 335.13213 * 12 10 9 34 34 H 0.96996 * 120.00440 * 72.22910 * 15 13 12 35 35 H 1.09008 * 109.62143 * 59.63264 * 18 16 15 36 36 H 1.09004 * 109.51905 * 304.57106 * 19 18 16 37 37 H 1.09000 * 109.52205 * 64.75754 * 19 18 16 38 38 H 0.97000 * 118.70067 * 179.43167 * 22 20 19 39 39 H 1.09000 * 109.52386 * 210.97777 * 25 23 22 40 40 H 1.09004 * 109.51917 * 90.78856 * 25 23 22 41 41 H 1.09006 * 113.66074 * 215.29190 * 27 26 13 42 42 H 1.08994 * 113.66448 * 346.35155 * 27 26 13 43 43 H 1.09009 * 113.57633 * 270.12923 * 28 27 26 44 44 H 1.09000 * 113.65567 * 139.34741 * 28 27 26 45 45 H 1.08990 * 113.66878 * 13.64950 * 29 26 13 46 46 H 1.09008 * 113.66523 * 144.70973 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3882 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0668 -3.5649 -0.4041 12 6 1.9943 -4.4082 1.3406 13 6 0.7251 -5.0994 0.8101 14 1 0.6691 -6.1598 1.0560 15 7 -0.5121 -4.3773 1.1170 16 6 -1.3617 -4.8603 2.0452 17 8 -1.1023 -5.8928 2.6259 18 6 -2.6340 -4.1171 2.3613 19 6 -2.2957 -2.7191 2.8899 20 6 -3.5662 -2.0285 3.3101 21 8 -3.6333 -0.8196 3.2502 22 7 -4.6250 -2.7251 3.7495 23 6 -4.6253 -4.0640 3.8320 24 8 -5.6186 -4.6348 4.2283 25 6 -3.4156 -4.8716 3.4422 26 6 1.2651 -4.8227 -0.5935 27 6 1.9573 -5.9187 -1.4046 28 6 0.6286 -6.0732 -2.1667 29 6 0.3201 -4.6159 -1.7776 30 1 -0.4851 0.8401 -0.0004 31 1 0.3554 -2.3881 -0.0005 32 1 2.8292 -5.0910 1.4981 33 1 1.8115 -3.7580 2.1960 34 1 -0.7198 -3.5516 0.6523 35 1 -3.2425 -4.0336 1.4607 36 1 -1.6278 -2.8055 3.7470 37 1 -1.8091 -2.1406 2.1046 38 1 -5.4217 -2.2415 4.0185 39 1 -3.7333 -5.8392 3.0536 40 1 -2.7797 -5.0196 4.3151 41 1 2.7767 -5.5533 -2.0237 42 1 2.2278 -6.7945 -0.8150 43 1 -0.0504 -6.7976 -1.7169 44 1 0.7543 -6.2208 -3.2393 45 1 -0.7171 -4.4511 -1.4861 46 1 0.6794 -3.8844 -2.5016 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078748575.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:13 Heat of formation + Delta-G solvation = -73.890470 kcal Electronic energy + Delta-G solvation = -30325.728622 eV Core-core repulsion = 26216.070757 eV Total energy + Delta-G solvation = -4109.657865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.69850 -41.88332 -40.16005 -39.98186 -36.69480 -36.54878 -35.31751 -34.91563 -33.68309 -31.59924 -29.88852 -27.00417 -26.75366 -25.73809 -25.27842 -24.30731 -23.97774 -21.57198 -21.28894 -20.39754 -19.75206 -18.97495 -18.76719 -18.46613 -17.94375 -17.07340 -16.83430 -16.74112 -16.37672 -16.13741 -15.87981 -15.76760 -15.52568 -15.42838 -15.11827 -14.82073 -14.60869 -14.35117 -13.87446 -13.52872 -13.26909 -13.15964 -13.09835 -12.88634 -12.67163 -12.51444 -12.48659 -12.34847 -12.09798 -11.98232 -11.90448 -11.78132 -11.42794 -11.40400 -11.27858 -11.10028 -10.80216 -10.72334 -10.59863 -9.87377 -8.90679 -7.90877 -5.15552 0.36838 1.47121 1.49127 1.52423 1.59176 1.64526 1.68384 2.08397 2.59130 2.86508 3.27020 3.37411 3.43296 3.46628 3.54317 3.73509 3.86734 3.90202 4.00480 4.02081 4.10074 4.27931 4.34156 4.37252 4.54993 4.64026 4.72278 4.74812 4.82200 4.87495 4.92023 4.98669 5.01185 5.08193 5.16714 5.17686 5.25482 5.29623 5.57313 5.59516 5.69649 5.72102 5.72978 6.23982 6.32513 6.52077 6.72341 7.15214 7.41197 8.14859 8.39045 9.30951 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008699 B = 0.004886 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.826070 B = 5729.382671 C = 8252.594653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.059 4.059 3 Si 0.956 3.044 4 H -0.271 1.271 5 H -0.298 1.298 6 H -0.301 1.301 7 C -0.237 4.237 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.162 3.838 11 H 0.059 0.941 12 C -0.177 4.177 13 C 0.155 3.845 14 H 0.101 0.899 15 N -0.696 5.696 16 C 0.531 3.469 17 O -0.562 6.562 18 C -0.101 4.101 19 C -0.132 4.132 20 C 0.541 3.459 21 O -0.530 6.530 22 N -0.667 5.667 23 C 0.542 3.458 24 O -0.530 6.530 25 C -0.113 4.113 26 C -0.125 4.125 27 C -0.096 4.096 28 C -0.128 4.128 29 C -0.122 4.122 30 H 0.249 0.751 31 H 0.375 0.625 32 H 0.100 0.900 33 H 0.049 0.951 34 H 0.405 0.595 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.417 0.583 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 -13.560 1.475 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.253 4.253 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.226 1.226 6 H -0.228 1.228 7 C -0.369 4.369 8 H 0.090 0.910 9 N -0.346 5.346 10 C 0.051 3.949 11 H 0.077 0.923 12 C -0.219 4.219 13 C 0.050 3.950 14 H 0.119 0.881 15 N -0.347 5.347 16 C 0.317 3.683 17 O -0.441 6.441 18 C -0.122 4.122 19 C -0.172 4.172 20 C 0.331 3.669 21 O -0.404 6.404 22 N -0.332 5.332 23 C 0.332 3.668 24 O -0.405 6.405 25 C -0.153 4.153 26 C -0.127 4.127 27 C -0.134 4.134 28 C -0.165 4.165 29 C -0.160 4.160 30 H 0.058 0.942 31 H 0.210 0.790 32 H 0.119 0.881 33 H 0.067 0.933 34 H 0.242 0.758 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.132 0.868 38 H 0.257 0.743 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.075 0.925 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.075 -13.912 1.974 14.384 hybrid contribution -0.388 2.274 0.008 2.307 sum -3.463 -11.638 1.982 12.303 Atomic orbital electron populations 1.69689 1.05812 1.25699 1.59178 1.25244 0.96229 0.99938 1.03888 0.85326 0.78400 0.81252 0.76253 1.19538 1.22558 1.22826 1.19553 0.91334 0.84995 1.40997 0.91035 1.42118 1.05107 0.99943 1.87401 1.21290 0.94882 0.84711 0.94001 0.92263 1.24197 0.97989 1.00016 0.99663 1.21422 0.83301 0.96094 0.94206 0.88106 1.45840 1.20992 1.27392 1.40452 1.20251 0.84477 0.84758 0.78769 1.90694 1.76614 1.25104 1.51656 1.21437 0.95508 0.93465 1.01832 1.21910 0.94597 0.94979 1.05687 1.20868 0.85049 0.86962 0.74001 1.90842 1.82568 1.15912 1.51086 1.44807 1.18558 1.09173 1.60661 1.21050 0.89783 0.81382 0.74554 1.90789 1.35414 1.70128 1.44173 1.21762 0.93014 0.99451 1.01066 1.23405 0.98500 0.97808 0.92991 1.22510 0.96996 0.96660 0.97229 1.22804 0.97341 0.95717 1.00666 1.22496 0.98618 0.97628 0.97268 0.94205 0.79033 0.88119 0.93261 0.75770 0.85026 0.85446 0.86835 0.74337 0.84990 0.85134 0.89218 0.89767 0.89816 0.90599 0.92477 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.55 13.06 21.65 0.28 -52.27 16 2 C -0.06 -3.13 5.50 84.86 0.47 -2.66 16 3 Si 0.96 44.01 29.55 68.60 2.03 46.04 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 7 C -0.24 -11.87 9.97 84.03 0.84 -11.03 16 8 H 0.07 3.54 7.83 -2.91 -0.02 3.52 16 9 N -0.71 -30.30 4.98 -321.55 -1.60 -31.90 16 10 C 0.16 5.50 4.36 45.29 0.20 5.69 16 11 H 0.06 2.08 8.10 -2.39 -0.02 2.06 16 12 C -0.18 -5.33 7.69 31.23 0.24 -5.09 16 13 C 0.16 4.21 4.12 45.28 0.19 4.40 16 14 H 0.10 2.66 7.46 -2.39 -0.02 2.64 16 15 N -0.70 -18.84 4.61 -441.15 -2.03 -20.88 16 16 C 0.53 13.14 7.16 87.65 0.63 13.77 16 17 O -0.56 -16.26 15.55 -3.02 -0.05 -16.31 16 18 C -0.10 -1.94 2.66 -11.38 -0.03 -1.97 16 19 C -0.13 -3.02 5.24 29.89 0.16 -2.87 16 20 C 0.54 13.55 7.74 87.72 0.68 14.23 16 21 O -0.53 -18.22 17.88 -2.87 -0.05 -18.27 16 22 N -0.67 -13.51 5.09 -428.63 -2.18 -15.69 16 23 C 0.54 10.89 7.74 87.72 0.68 11.57 16 24 O -0.53 -13.79 17.88 -2.87 -0.05 -13.84 16 25 C -0.11 -1.94 4.70 29.90 0.14 -1.80 16 26 C -0.12 -3.33 0.78 -52.31 -0.04 -3.37 16 27 C -0.10 -1.99 7.84 30.88 0.24 -1.75 16 28 C -0.13 -2.60 8.08 31.23 0.25 -2.34 16 29 C -0.12 -3.28 7.27 30.88 0.22 -3.06 16 30 H 0.25 13.76 8.31 -92.70 -0.77 12.99 16 31 H 0.38 16.45 5.34 -92.71 -0.49 15.95 16 32 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.40 12.11 5.53 -92.71 -0.51 11.59 16 35 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.13 2.68 8.14 -2.38 -0.02 2.66 16 37 H 0.11 3.27 7.78 -2.39 -0.02 3.25 16 38 H 0.42 7.77 8.79 -92.71 -0.81 6.96 16 39 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.13 2.10 7.98 -2.38 -0.02 2.08 16 41 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 1.56 7.58 -2.39 -0.02 1.54 16 46 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -65.74 376.88 0.42 -65.32 By element: Atomic # 1 Polarization: 44.86 SS G_CDS: -0.78 Total: 44.08 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: 4.86 Total: 13.72 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -5.53 Total: -120.73 kcal Atomic # 8 Polarization: -48.28 SS G_CDS: -0.15 Total: -48.43 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -65.74 0.42 -65.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078748575.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.569 kcal (2) G-P(sol) polarization free energy of solvation -65.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds