Wall clock time and date at job start Tue Mar 31 2020 18:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48506 * 109.46977 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47219 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.46825 * 60.00571 * 3 2 1 7 7 C 1.38813 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00084 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00220 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00524 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.88336 * 26.83320 * 10 9 7 12 12 C 1.53952 * 113.66348 * 255.49654 * 10 9 7 13 13 C 1.53943 * 87.29560 * 220.69635 * 12 10 9 14 14 H 1.08998 * 113.66435 * 139.29777 * 13 12 10 15 15 N 1.46506 * 113.66394 * 270.26134 * 13 12 10 16 16 C 1.34774 * 119.99952 * 253.98904 * 15 13 12 17 17 O 1.21286 * 119.99955 * 359.97438 * 16 15 13 18 18 C 1.50696 * 119.99763 * 179.97438 * 16 15 13 19 19 N 1.46505 * 109.47075 * 180.02562 * 18 16 15 20 20 C 1.33877 * 122.75987 * 269.71004 * 19 18 16 21 21 O 1.21231 * 125.39709 * 359.97438 * 20 19 18 22 22 C 1.51321 * 109.20703 * 179.84155 * 20 19 18 23 23 C 1.54228 * 103.55044 * 0.38830 * 22 20 19 24 24 C 1.33877 * 122.76387 * 90.00141 * 19 18 16 25 25 O 1.21222 * 125.39719 * 0.02562 * 24 19 18 26 26 C 1.52913 * 86.88631 * 24.78041 * 13 12 10 27 27 C 1.52905 * 121.14062 * 209.33548 * 26 13 12 28 28 C 1.53954 * 86.78212 * 209.37472 * 27 26 13 29 29 C 1.52904 * 121.13972 * 100.76887 * 26 13 12 30 30 H 0.96993 * 120.00246 * 359.97438 * 1 2 3 31 31 H 0.97004 * 120.00242 * 359.97438 * 9 7 2 32 32 H 1.09002 * 113.57984 * 106.08725 * 12 10 9 33 33 H 1.09003 * 113.57664 * 335.30070 * 12 10 9 34 34 H 0.96997 * 119.99707 * 73.98686 * 15 13 12 35 35 H 1.09001 * 109.47518 * 299.99952 * 18 16 15 36 36 H 1.09002 * 109.47529 * 60.00274 * 18 16 15 37 37 H 1.09002 * 110.79361 * 241.77791 * 22 20 19 38 38 H 1.08996 * 110.41454 * 118.81552 * 22 20 19 39 39 H 1.09005 * 110.60352 * 241.26015 * 23 22 20 40 40 H 1.08995 * 110.60806 * 118.29749 * 23 22 20 41 41 H 1.08997 * 113.66424 * 323.84448 * 27 26 13 42 42 H 1.08997 * 113.66192 * 94.90512 * 27 26 13 43 43 H 1.09008 * 113.57812 * 270.13196 * 28 27 26 44 44 H 1.08992 * 113.58095 * 139.33787 * 28 27 26 45 45 H 1.09008 * 113.66123 * 265.10264 * 29 26 13 46 46 H 1.08996 * 113.66367 * 36.06172 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0460 -3.5759 0.4528 12 6 2.0611 -4.3685 -1.3657 13 6 1.8556 -5.6865 -0.5971 14 1 1.1487 -6.3654 -1.0741 15 7 3.1069 -6.3445 -0.2131 16 6 3.5153 -7.4499 -0.8671 17 8 2.8467 -7.9001 -1.7733 18 6 4.8028 -8.1263 -0.4724 19 7 5.0223 -9.2954 -1.3277 20 6 4.5733 -10.5170 -1.0142 21 8 3.9487 -10.8004 -0.0145 22 6 4.9660 -11.4874 -2.1068 23 6 5.7366 -10.6072 -3.1119 24 6 5.6934 -9.2311 -2.4843 25 8 6.1884 -8.2292 -2.9542 26 6 1.2384 -4.8425 0.5187 27 6 1.3197 -5.2832 1.9806 28 6 -0.0097 -4.5355 2.1896 29 6 -0.2780 -4.7425 0.6879 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 0.0002 32 1 3.0176 -4.3112 -1.8852 33 1 1.2173 -4.0977 -2.0004 34 1 3.6415 -5.9845 0.5118 35 1 5.6315 -7.4284 -0.5919 36 1 4.7423 -8.4437 0.5687 37 1 4.0824 -11.9210 -2.5752 38 1 5.6121 -12.2689 -1.7071 39 1 5.2364 -10.6030 -4.0804 40 1 6.7661 -10.9509 -3.2123 41 1 1.2412 -6.3617 2.1174 42 1 2.1576 -4.8458 2.5234 43 1 0.1176 -3.4897 2.4697 44 1 -0.7109 -5.0647 2.8348 45 1 -0.7164 -3.8731 0.1978 46 1 -0.8056 -5.6685 0.4598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078804375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:17 Heat of formation + Delta-G solvation = -35.653181 kcal Electronic energy + Delta-G solvation = -29348.552682 eV Core-core repulsion = 25240.552910 eV Total energy + Delta-G solvation = -4107.999772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.26472 -40.59506 -38.89553 -38.86984 -36.13403 -35.06749 -34.08913 -33.82888 -32.31084 -30.00548 -28.22461 -26.55807 -25.47191 -24.64992 -24.14304 -22.74574 -22.41866 -21.33518 -20.12290 -19.77021 -18.20726 -17.89833 -17.60739 -16.92781 -16.81659 -16.62466 -15.89097 -15.28832 -15.02306 -14.96982 -14.83500 -14.52512 -14.45618 -14.26128 -13.95127 -13.72360 -13.39788 -13.17398 -12.87031 -12.58187 -12.36967 -12.02220 -11.80573 -11.76859 -11.70642 -11.37162 -11.03551 -10.91347 -10.84250 -10.72782 -10.60580 -10.38825 -10.16839 -10.13281 -9.86929 -9.77481 -9.60510 -9.40736 -8.87099 -8.75876 -6.98899 -5.81616 -3.10163 1.19921 1.96811 2.37364 2.48528 3.16347 3.40534 3.46671 3.48585 3.67733 3.81453 4.01183 4.39774 4.53612 4.56025 4.67214 4.76538 4.83558 4.98002 5.00457 5.02023 5.07981 5.16104 5.19437 5.21821 5.26360 5.43093 5.67560 5.80600 5.93642 5.99468 6.03915 6.09001 6.13883 6.28993 6.39883 6.42247 6.45395 6.55589 6.63118 6.85937 6.90629 6.96563 7.03185 7.36964 7.50720 7.67073 8.12992 8.37161 9.48891 10.05925 10.40782 11.40735 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017989 B = 0.002673 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.119786 B =10471.064119 C =11495.210495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.708 5.708 10 C 0.192 3.808 11 H 0.075 0.925 12 C -0.174 4.174 13 C 0.130 3.870 14 H 0.094 0.906 15 N -0.696 5.696 16 C 0.504 3.496 17 O -0.536 6.536 18 C 0.077 3.923 19 N -0.558 5.558 20 C 0.531 3.469 21 O -0.480 6.480 22 C -0.154 4.154 23 C -0.154 4.154 24 C 0.530 3.470 25 O -0.477 6.477 26 C -0.120 4.120 27 C -0.126 4.126 28 C -0.131 4.131 29 C -0.110 4.110 30 H 0.255 0.745 31 H 0.387 0.613 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.402 0.598 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.057 0.943 45 H 0.079 0.921 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.647 -24.052 -0.673 26.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.347 5.347 10 C 0.080 3.920 11 H 0.092 0.908 12 C -0.216 4.216 13 C 0.025 3.975 14 H 0.112 0.888 15 N -0.346 5.346 16 C 0.288 3.712 17 O -0.412 6.412 18 C -0.048 4.048 19 N -0.301 5.301 20 C 0.320 3.680 21 O -0.351 6.351 22 C -0.193 4.193 23 C -0.194 4.194 24 C 0.319 3.681 25 O -0.347 6.347 26 C -0.122 4.122 27 C -0.164 4.164 28 C -0.168 4.168 29 C -0.148 4.148 30 H 0.065 0.935 31 H 0.223 0.777 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.236 0.764 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.108 0.892 44 H 0.076 0.924 45 H 0.098 0.902 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.204 -23.774 -1.018 25.891 hybrid contribution 0.330 1.263 0.296 1.339 sum 10.534 -22.511 -0.721 24.864 Atomic orbital electron populations 1.69659 1.05105 1.25664 1.57462 1.24745 0.95502 0.97724 1.02776 0.86135 0.78818 0.84148 0.77184 1.20554 1.21861 1.21872 1.19314 0.91067 0.84151 1.42886 0.91122 1.42400 1.05924 0.99557 1.86850 1.21336 0.94041 0.84529 0.92130 0.90762 1.24272 1.01900 0.95070 1.00382 1.21745 0.85028 0.93437 0.97322 0.88772 1.45489 1.24701 1.27445 1.36997 1.20586 0.87001 0.80900 0.82723 1.90709 1.56127 1.64616 1.29758 1.21593 0.98199 0.88393 0.96608 1.46305 1.50659 1.10374 1.22777 1.20834 0.76893 0.83043 0.87185 1.90790 1.36092 1.80361 1.27902 1.22453 1.03724 0.98370 0.94803 1.22454 1.04563 0.91295 1.01053 1.20839 0.75757 0.91798 0.79695 1.90807 1.44022 1.36093 1.63808 1.23600 0.97470 0.97969 0.93206 1.22650 0.98606 0.99241 0.95887 1.22742 0.96571 1.01464 0.96062 1.22458 0.93638 1.01804 0.96909 0.93481 0.77687 0.92252 0.89536 0.76363 0.85740 0.85805 0.85909 0.86095 0.85918 0.86048 0.90885 0.91652 0.89163 0.92412 0.90228 0.90745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.56 9.98 -15.06 -0.15 -6.71 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -17.01 5.36 -52.84 -0.28 -17.29 16 10 C 0.19 3.65 4.28 -67.33 -0.29 3.36 16 11 H 0.07 1.38 8.12 -51.93 -0.42 0.96 16 12 C -0.17 -3.14 7.68 -25.75 -0.20 -3.34 16 13 C 0.13 2.02 4.09 -67.48 -0.28 1.75 16 14 H 0.09 1.59 7.50 -51.93 -0.39 1.20 16 15 N -0.70 -9.01 5.06 -53.37 -0.27 -9.28 16 16 C 0.50 6.92 7.90 -10.99 -0.09 6.83 16 17 O -0.54 -9.41 16.05 5.55 0.09 -9.32 16 18 C 0.08 0.77 6.04 -5.19 -0.03 0.74 16 19 N -0.56 -5.60 2.04 -116.62 -0.24 -5.83 16 20 C 0.53 5.01 8.08 -11.08 -0.09 4.92 16 21 O -0.48 -6.14 17.47 5.60 0.10 -6.04 16 22 C -0.15 -0.68 7.03 -26.94 -0.19 -0.87 16 23 C -0.15 -0.70 7.03 -26.94 -0.19 -0.89 16 24 C 0.53 5.18 8.08 -11.09 -0.09 5.09 16 25 O -0.48 -6.43 17.48 5.61 0.10 -6.33 16 26 C -0.12 -1.90 0.92 -154.56 -0.14 -2.04 16 27 C -0.13 -1.76 7.46 -26.28 -0.20 -1.96 16 28 C -0.13 -2.01 8.08 -25.75 -0.21 -2.21 16 29 C -0.11 -1.77 7.46 -26.29 -0.20 -1.96 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.39 9.85 5.88 -40.82 -0.24 9.61 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 34 H 0.40 4.20 8.58 -40.82 -0.35 3.85 16 35 H 0.12 1.03 7.83 -51.93 -0.41 0.63 16 36 H 0.12 0.97 7.82 -51.93 -0.41 0.56 16 37 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.08 1.46 6.44 -51.92 -0.33 1.13 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -36.23 384.86 -8.18 -44.40 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -6.74 Total: 11.33 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -2.43 Total: 2.28 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.07 Total: -59.23 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.28 Total: -21.69 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.23 -8.18 -44.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078804375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.750 kcal (2) G-P(sol) polarization free energy of solvation -36.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds