Wall clock time and date at job start Tue Mar 31 2020 18:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48506 * 109.46977 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47219 * 300.00166 * 3 2 1 6 6 H 1.48498 * 109.46825 * 60.00571 * 3 2 1 7 7 C 1.38813 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00084 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00220 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00524 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.88336 * 26.83320 * 10 9 7 12 12 C 1.53952 * 113.66348 * 255.49654 * 10 9 7 13 13 C 1.53943 * 87.29560 * 220.69635 * 12 10 9 14 14 H 1.08998 * 113.66435 * 139.29777 * 13 12 10 15 15 N 1.46506 * 113.66394 * 270.26134 * 13 12 10 16 16 C 1.34774 * 119.99952 * 253.98904 * 15 13 12 17 17 O 1.21286 * 119.99955 * 359.97438 * 16 15 13 18 18 C 1.50696 * 119.99763 * 179.97438 * 16 15 13 19 19 N 1.46505 * 109.47075 * 180.02562 * 18 16 15 20 20 C 1.33877 * 122.75987 * 269.71004 * 19 18 16 21 21 O 1.21231 * 125.39709 * 359.97438 * 20 19 18 22 22 C 1.51321 * 109.20703 * 179.84155 * 20 19 18 23 23 C 1.54228 * 103.55044 * 0.38830 * 22 20 19 24 24 C 1.33877 * 122.76387 * 90.00141 * 19 18 16 25 25 O 1.21222 * 125.39719 * 0.02562 * 24 19 18 26 26 C 1.52913 * 86.88631 * 24.78041 * 13 12 10 27 27 C 1.52905 * 121.14062 * 209.33548 * 26 13 12 28 28 C 1.53954 * 86.78212 * 209.37472 * 27 26 13 29 29 C 1.52904 * 121.13972 * 100.76887 * 26 13 12 30 30 H 0.96993 * 120.00246 * 359.97438 * 1 2 3 31 31 H 0.97004 * 120.00242 * 359.97438 * 9 7 2 32 32 H 1.09002 * 113.57984 * 106.08725 * 12 10 9 33 33 H 1.09003 * 113.57664 * 335.30070 * 12 10 9 34 34 H 0.96997 * 119.99707 * 73.98686 * 15 13 12 35 35 H 1.09001 * 109.47518 * 299.99952 * 18 16 15 36 36 H 1.09002 * 109.47529 * 60.00274 * 18 16 15 37 37 H 1.09002 * 110.79361 * 241.77791 * 22 20 19 38 38 H 1.08996 * 110.41454 * 118.81552 * 22 20 19 39 39 H 1.09005 * 110.60352 * 241.26015 * 23 22 20 40 40 H 1.08995 * 110.60806 * 118.29749 * 23 22 20 41 41 H 1.08997 * 113.66424 * 323.84448 * 27 26 13 42 42 H 1.08997 * 113.66192 * 94.90512 * 27 26 13 43 43 H 1.09008 * 113.57812 * 270.13196 * 28 27 26 44 44 H 1.08992 * 113.58095 * 139.33787 * 28 27 26 45 45 H 1.09008 * 113.66123 * 265.10264 * 29 26 13 46 46 H 1.08996 * 113.66367 * 36.06172 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0460 -3.5759 0.4528 12 6 2.0611 -4.3685 -1.3657 13 6 1.8556 -5.6865 -0.5971 14 1 1.1487 -6.3654 -1.0741 15 7 3.1069 -6.3445 -0.2131 16 6 3.5153 -7.4499 -0.8671 17 8 2.8467 -7.9001 -1.7733 18 6 4.8028 -8.1263 -0.4724 19 7 5.0223 -9.2954 -1.3277 20 6 4.5733 -10.5170 -1.0142 21 8 3.9487 -10.8004 -0.0145 22 6 4.9660 -11.4874 -2.1068 23 6 5.7366 -10.6072 -3.1119 24 6 5.6934 -9.2311 -2.4843 25 8 6.1884 -8.2292 -2.9542 26 6 1.2384 -4.8425 0.5187 27 6 1.3197 -5.2832 1.9806 28 6 -0.0097 -4.5355 2.1896 29 6 -0.2780 -4.7425 0.6879 30 1 -0.4850 0.8400 0.0004 31 1 0.3555 -2.3881 0.0002 32 1 3.0176 -4.3112 -1.8852 33 1 1.2173 -4.0977 -2.0004 34 1 3.6415 -5.9845 0.5118 35 1 5.6315 -7.4284 -0.5919 36 1 4.7423 -8.4437 0.5687 37 1 4.0824 -11.9210 -2.5752 38 1 5.6121 -12.2689 -1.7071 39 1 5.2364 -10.6030 -4.0804 40 1 6.7661 -10.9509 -3.2123 41 1 1.2412 -6.3617 2.1174 42 1 2.1576 -4.8458 2.5234 43 1 0.1176 -3.4897 2.4697 44 1 -0.7109 -5.0647 2.8348 45 1 -0.7164 -3.8731 0.1978 46 1 -0.8056 -5.6685 0.4598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078804375.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:16 Heat of formation + Delta-G solvation = -61.556473 kcal Electronic energy + Delta-G solvation = -29349.675933 eV Core-core repulsion = 25240.552910 eV Total energy + Delta-G solvation = -4109.123023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.98061 -41.91748 -40.07168 -39.66890 -36.93502 -36.41416 -35.82556 -34.49570 -33.79337 -31.81675 -29.10869 -27.11087 -26.73699 -26.46901 -25.54735 -23.97424 -23.33216 -22.52664 -21.40662 -20.58160 -19.64803 -19.12790 -18.64878 -18.24181 -17.55501 -17.49265 -17.09362 -16.74404 -16.40356 -16.15852 -15.83257 -15.72386 -15.38214 -15.28593 -15.04117 -14.91653 -14.42000 -14.20977 -14.04195 -13.59893 -13.52552 -13.36239 -13.25846 -13.19304 -12.91287 -12.80921 -12.53275 -12.13364 -12.10326 -11.96130 -11.88449 -11.79164 -11.66683 -11.35537 -11.19438 -11.12279 -10.94336 -10.72954 -10.68567 -10.02660 -8.98057 -7.95310 -5.22980 0.50157 1.24674 1.40027 1.46089 1.46970 1.56379 1.69993 2.15262 2.55047 3.21372 3.26710 3.35521 3.42746 3.50718 3.63982 3.67468 3.73095 3.87266 3.98721 4.00236 4.08966 4.10555 4.20594 4.22624 4.26711 4.53364 4.59562 4.69350 4.76894 4.82452 4.85012 4.91335 4.92942 4.96536 5.04410 5.10429 5.14505 5.20489 5.47331 5.55263 5.58254 5.62253 5.74458 6.26891 6.28639 6.38338 6.70366 7.06358 7.33988 8.10376 8.33862 9.28089 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017989 B = 0.002673 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.119786 B =10471.064119 C =11495.210495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.298 1.298 6 H -0.293 1.293 7 C -0.240 4.240 8 H 0.076 0.924 9 N -0.720 5.720 10 C 0.181 3.819 11 H 0.083 0.917 12 C -0.173 4.173 13 C 0.149 3.851 14 H 0.084 0.916 15 N -0.687 5.687 16 C 0.500 3.500 17 O -0.577 6.577 18 C 0.076 3.924 19 N -0.567 5.567 20 C 0.523 3.477 21 O -0.520 6.520 22 C -0.140 4.140 23 C -0.141 4.141 24 C 0.521 3.479 25 O -0.524 6.524 26 C -0.111 4.111 27 C -0.108 4.108 28 C -0.130 4.130 29 C -0.114 4.114 30 H 0.250 0.750 31 H 0.377 0.623 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.417 0.583 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.156 0.844 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.097 0.903 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.048 0.952 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.684 -26.776 -0.191 29.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.266 4.266 3 Si 0.799 3.201 4 H -0.190 1.190 5 H -0.225 1.225 6 H -0.221 1.221 7 C -0.372 4.372 8 H 0.094 0.906 9 N -0.359 5.359 10 C 0.071 3.929 11 H 0.100 0.900 12 C -0.215 4.215 13 C 0.043 3.957 14 H 0.102 0.898 15 N -0.338 5.338 16 C 0.286 3.714 17 O -0.457 6.457 18 C -0.049 4.049 19 N -0.309 5.309 20 C 0.315 3.685 21 O -0.394 6.394 22 C -0.179 4.179 23 C -0.180 4.180 24 C 0.313 3.687 25 O -0.398 6.398 26 C -0.113 4.113 27 C -0.146 4.146 28 C -0.167 4.167 29 C -0.152 4.152 30 H 0.059 0.941 31 H 0.211 0.789 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.254 0.746 35 H 0.158 0.842 36 H 0.165 0.835 37 H 0.156 0.844 38 H 0.174 0.826 39 H 0.154 0.846 40 H 0.173 0.827 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.067 0.933 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 12.304 -26.550 -0.518 29.267 hybrid contribution -0.298 2.053 0.112 2.078 sum 12.006 -24.497 -0.406 27.284 Atomic orbital electron populations 1.69812 1.06555 1.25890 1.59640 1.25506 0.96298 1.00919 1.03894 0.85135 0.78344 0.80179 0.76482 1.19014 1.22508 1.22068 1.19698 0.91488 0.85294 1.40691 0.90572 1.42549 1.05646 1.00578 1.87100 1.21607 0.94630 0.83602 0.93110 0.89964 1.24133 1.00843 0.96903 0.99665 1.21373 0.85955 0.92109 0.96271 0.89766 1.45373 1.23907 1.27207 1.37280 1.21290 0.87745 0.80527 0.81791 1.90685 1.57661 1.65750 1.31578 1.21687 0.96275 0.89005 0.97914 1.46601 1.50580 1.10632 1.23051 1.21754 0.75702 0.83492 0.87560 1.90766 1.37918 1.80921 1.29829 1.22595 1.04834 0.97715 0.92749 1.22596 1.06818 0.87598 1.00965 1.21807 0.74373 0.93243 0.79319 1.90781 1.46019 1.38178 1.64804 1.23364 0.97070 0.95952 0.94941 1.22614 0.97972 1.00436 0.93553 1.22653 0.98201 1.00170 0.95685 1.22516 0.93723 1.01485 0.97433 0.94103 0.78885 0.92689 0.91563 0.74627 0.84214 0.83545 0.84435 0.82634 0.84607 0.82682 0.88488 0.90766 0.92274 0.90085 0.93333 0.88634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 3 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 7 C -0.24 -13.11 9.98 84.03 0.84 -12.27 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -35.49 5.36 -321.09 -1.72 -37.21 16 10 C 0.18 6.89 4.28 45.38 0.19 7.08 16 11 H 0.08 3.00 8.12 -2.39 -0.02 2.98 16 12 C -0.17 -6.38 7.68 31.23 0.24 -6.14 16 13 C 0.15 4.57 4.09 45.28 0.19 4.76 16 14 H 0.08 2.83 7.50 -2.39 -0.02 2.81 16 15 N -0.69 -16.86 5.06 -441.15 -2.23 -19.09 16 16 C 0.50 13.27 7.90 87.66 0.69 13.96 16 17 O -0.58 -20.16 16.05 -3.05 -0.05 -20.21 16 18 C 0.08 1.40 6.04 85.63 0.52 1.92 16 19 N -0.57 -10.47 2.04 -760.71 -1.55 -12.02 16 20 C 0.52 8.80 8.08 87.99 0.71 9.51 16 21 O -0.52 -12.56 17.47 -2.88 -0.05 -12.61 16 22 C -0.14 -0.72 7.03 30.46 0.21 -0.50 16 23 C -0.14 -0.80 7.03 30.46 0.21 -0.58 16 24 C 0.52 9.34 8.08 87.99 0.71 10.05 16 25 O -0.52 -13.84 17.48 -2.85 -0.05 -13.89 16 26 C -0.11 -3.44 0.92 -52.21 -0.05 -3.49 16 27 C -0.11 -2.77 7.46 30.88 0.23 -2.54 16 28 C -0.13 -3.85 8.08 31.23 0.25 -3.59 16 29 C -0.11 -3.63 7.46 30.88 0.23 -3.40 16 30 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.38 20.03 5.88 -92.71 -0.55 19.49 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 34 H 0.42 7.82 8.58 -92.71 -0.80 7.03 16 35 H 0.14 2.12 7.83 -2.39 -0.02 2.10 16 36 H 0.15 1.99 7.82 -2.39 -0.02 1.97 16 37 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.16 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.14 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.16 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 44 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.05 1.87 6.44 -2.38 -0.02 1.85 16 46 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -82.53 384.86 1.99 -80.55 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -0.32 Total: 34.11 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: 5.65 Total: 11.01 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -5.22 Total: -127.13 kcal Atomic # 8 Polarization: -46.57 SS G_CDS: -0.15 Total: -46.72 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -82.53 1.99 -80.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078804375.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.992 kcal (2) G-P(sol) polarization free energy of solvation -82.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds