Wall clock time and date at job start Tue Mar 31 2020 18:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48493 * 109.47144 * 269.99568 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00085 * 3 2 1 6 6 H 1.48502 * 109.46967 * 149.99516 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 112.88754 * 23.93049 * 10 9 7 12 12 C 1.53957 * 113.66372 * 252.46113 * 10 9 7 13 13 C 1.53947 * 87.29654 * 220.79461 * 12 10 9 14 14 H 1.09001 * 113.75039 * 270.24741 * 13 12 10 15 15 N 1.46497 * 113.66168 * 139.20574 * 13 12 10 16 16 C 1.34776 * 120.00184 * 107.81602 * 15 13 12 17 17 O 1.21276 * 120.00060 * 359.97438 * 16 15 13 18 18 C 1.50705 * 119.99999 * 180.02562 * 16 15 13 19 19 N 1.46497 * 109.46850 * 179.97438 * 18 16 15 20 20 C 1.33878 * 122.76378 * 269.70523 * 19 18 16 21 21 O 1.21220 * 125.39604 * 359.97438 * 20 19 18 22 22 C 1.51315 * 109.20586 * 179.84627 * 20 19 18 23 23 C 1.54233 * 103.55520 * 0.38590 * 22 20 19 24 24 C 1.33882 * 122.76162 * 89.99896 * 19 18 16 25 25 O 1.21222 * 125.39671 * 0.02562 * 24 19 18 26 26 C 1.52908 * 113.66357 * 155.27728 * 10 9 7 27 27 C 1.52908 * 121.13642 * 13.64835 * 26 10 9 28 28 C 1.53946 * 86.78542 * 209.38235 * 27 26 10 29 29 C 1.52910 * 121.13509 * 265.09062 * 26 10 9 30 30 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 32 32 H 1.09000 * 113.57648 * 335.40139 * 12 10 9 33 33 H 1.08999 * 113.57776 * 106.19339 * 12 10 9 34 34 H 0.97006 * 119.99852 * 287.81226 * 15 13 12 35 35 H 1.09001 * 109.46844 * 299.99839 * 18 16 15 36 36 H 1.09000 * 109.47157 * 59.99231 * 18 16 15 37 37 H 1.09002 * 110.79499 * 241.78278 * 22 20 19 38 38 H 1.08998 * 110.54956 * 118.87504 * 22 20 19 39 39 H 1.08998 * 110.60603 * 241.26350 * 23 22 20 40 40 H 1.09001 * 110.73742 * 118.36482 * 23 22 20 41 41 H 1.09002 * 113.66478 * 323.85928 * 27 26 10 42 42 H 1.09008 * 113.65934 * 94.91137 * 27 26 10 43 43 H 1.08996 * 113.58314 * 270.13495 * 28 27 26 44 44 H 1.08999 * 113.65166 * 139.34935 * 28 27 26 45 45 H 1.09004 * 113.66092 * 265.08702 * 29 26 10 46 46 H 1.08994 * 113.66382 * 36.05415 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0664 -3.5659 0.3985 12 6 1.9937 -4.4014 -1.3511 13 6 1.8251 -5.7000 -0.5416 14 1 2.7677 -6.1856 -0.2893 15 7 0.8425 -6.6249 -1.1119 16 6 1.2540 -7.7601 -1.7108 17 8 2.4376 -8.0156 -1.7779 18 6 0.2432 -8.7113 -2.2980 19 7 0.9375 -9.8591 -2.8867 20 6 1.3374 -9.8868 -4.1640 21 8 1.1799 -8.9939 -4.9686 22 6 2.0200 -11.2080 -4.4434 23 6 1.9356 -11.9509 -3.0944 24 6 1.2191 -10.9691 -2.1931 25 8 0.9434 -11.1579 -1.0279 26 6 1.2654 -4.8257 0.5811 27 6 -0.2406 -4.7175 0.8230 28 6 -0.0394 -5.7165 1.9768 29 6 1.4190 -5.2284 2.0482 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 1.1202 -4.1445 -1.9502 33 1 2.9238 -4.3587 -1.9178 34 1 -0.1042 -6.4204 -1.0585 35 1 -0.4296 -9.0566 -1.5130 36 1 -0.3316 -8.1996 -3.0699 37 1 3.0598 -11.0531 -4.7315 38 1 1.4863 -11.7581 -5.2183 39 1 2.9333 -12.1655 -2.7115 40 1 1.3588 -12.8703 -3.1956 41 1 -0.5611 -3.7287 1.1512 42 1 -0.8444 -5.1100 0.0047 43 1 -0.1359 -6.7588 1.6730 44 1 -0.6225 -5.4799 2.8668 45 1 2.1410 -6.0291 2.2087 46 1 1.5666 -4.3834 2.7206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078804379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:20 Heat of formation + Delta-G solvation = -36.111270 kcal Electronic energy + Delta-G solvation = -29368.944811 eV Core-core repulsion = 25260.925175 eV Total energy + Delta-G solvation = -4108.019636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.26277 -40.64324 -38.87029 -38.86535 -36.12948 -34.94278 -34.17679 -33.82554 -32.53016 -29.97733 -28.30563 -26.55819 -25.54128 -24.64176 -24.08613 -22.74534 -22.57314 -20.79592 -20.41163 -19.83053 -18.39856 -17.77669 -17.50812 -17.07612 -16.81511 -16.54368 -16.05113 -15.35340 -15.06456 -14.90787 -14.81889 -14.52387 -14.46641 -14.26139 -14.13123 -13.65358 -13.18900 -13.06763 -12.89524 -12.70119 -12.47636 -12.07431 -11.86426 -11.80111 -11.53198 -11.32983 -11.04628 -11.01408 -10.83804 -10.76184 -10.65419 -10.38784 -10.25118 -10.10614 -9.98035 -9.83588 -9.62897 -9.41277 -8.83817 -8.77841 -6.98078 -5.81414 -3.09600 1.20009 1.97692 2.37561 2.48941 3.21304 3.41907 3.47674 3.48669 3.67778 3.81667 4.01228 4.39787 4.53363 4.58641 4.66382 4.73204 4.83644 4.88377 4.99838 5.00587 5.01960 5.13455 5.15888 5.19526 5.23558 5.42727 5.61879 5.81395 5.87365 5.97499 5.99841 6.11873 6.14402 6.22822 6.30461 6.36870 6.42513 6.50348 6.58797 6.74603 6.88374 6.96735 7.04051 7.37695 7.52283 7.68363 8.12455 8.37628 9.49256 10.06009 10.41098 11.41019 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020152 B = 0.002577 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.101188 B =10861.968908 C =11633.653413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.706 5.706 10 C 0.182 3.818 11 H 0.080 0.920 12 C -0.174 4.174 13 C 0.145 3.855 14 H 0.111 0.889 15 N -0.705 5.705 16 C 0.502 3.498 17 O -0.537 6.537 18 C 0.076 3.924 19 N -0.558 5.558 20 C 0.530 3.470 21 O -0.477 6.477 22 C -0.154 4.154 23 C -0.154 4.154 24 C 0.531 3.469 25 O -0.480 6.480 26 C -0.125 4.125 27 C -0.107 4.107 28 C -0.140 4.140 29 C -0.122 4.122 30 H 0.255 0.745 31 H 0.386 0.614 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.401 0.599 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -25.698 -5.154 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.344 5.344 10 C 0.069 3.931 11 H 0.098 0.902 12 C -0.217 4.217 13 C 0.041 3.959 14 H 0.129 0.871 15 N -0.356 5.356 16 C 0.286 3.714 17 O -0.414 6.414 18 C -0.049 4.049 19 N -0.301 5.301 20 C 0.319 3.681 21 O -0.348 6.348 22 C -0.194 4.194 23 C -0.194 4.194 24 C 0.320 3.680 25 O -0.351 6.351 26 C -0.128 4.128 27 C -0.145 4.145 28 C -0.177 4.177 29 C -0.159 4.159 30 H 0.065 0.935 31 H 0.221 0.779 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.237 0.763 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.117 0.883 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.044 -25.285 -4.972 25.769 hybrid contribution -0.373 1.167 -0.038 1.226 sum -0.417 -24.118 -5.010 24.636 Atomic orbital electron populations 1.69653 1.05112 1.25752 1.57587 1.24743 0.95525 0.97739 1.02808 0.86187 0.78685 0.83772 0.77539 1.21709 1.21794 1.20723 1.19308 0.91129 0.84124 1.42792 0.91062 1.42313 1.05782 0.99506 1.86786 1.21136 0.95088 0.84800 0.92054 0.90165 1.24305 1.01861 0.95000 1.00497 1.22208 0.92146 0.87563 0.94032 0.87127 1.45934 1.10990 1.20957 1.57728 1.20614 0.89908 0.82247 0.78599 1.90699 1.17458 1.75240 1.57995 1.21610 0.94894 0.87047 1.01358 1.46302 1.53533 1.16793 1.13465 1.20834 0.76985 0.89655 0.80608 1.90806 1.53197 1.41409 1.49347 1.22447 1.04595 0.93294 0.99015 1.22449 1.04157 0.99022 0.93737 1.20828 0.77371 0.82489 0.87269 1.90788 1.51085 1.78318 1.14944 1.23498 0.97625 0.97827 0.93819 1.22452 0.94091 1.00567 0.97395 1.22836 0.97445 0.98532 0.98931 1.22674 0.96279 1.00569 0.96390 0.93471 0.77870 0.90108 0.92114 0.76322 0.85899 0.85808 0.85900 0.86077 0.85956 0.86064 0.88303 0.92534 0.91045 0.91825 0.92143 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.55 13.06 55.49 0.72 -26.83 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 9 N -0.71 -17.02 5.30 -52.99 -0.28 -17.30 16 10 C 0.18 3.54 4.36 -67.48 -0.29 3.25 16 11 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 12 C -0.17 -3.11 7.68 -25.75 -0.20 -3.31 16 13 C 0.15 2.23 4.12 -67.48 -0.28 1.95 16 14 H 0.11 1.82 7.46 -51.93 -0.39 1.43 16 15 N -0.70 -9.18 5.28 -53.37 -0.28 -9.46 16 16 C 0.50 6.93 7.90 -10.98 -0.09 6.84 16 17 O -0.54 -9.38 16.03 5.56 0.09 -9.29 16 18 C 0.08 0.77 6.04 -5.19 -0.03 0.74 16 19 N -0.56 -5.64 2.04 -116.63 -0.24 -5.88 16 20 C 0.53 5.21 8.08 -11.08 -0.09 5.12 16 21 O -0.48 -6.45 17.47 5.61 0.10 -6.35 16 22 C -0.15 -0.71 7.03 -26.94 -0.19 -0.90 16 23 C -0.15 -0.69 7.03 -26.94 -0.19 -0.88 16 24 C 0.53 5.05 8.08 -11.09 -0.09 4.96 16 25 O -0.48 -6.17 17.48 5.61 0.10 -6.07 16 26 C -0.13 -1.97 1.06 -154.71 -0.16 -2.14 16 27 C -0.11 -1.59 6.78 -26.29 -0.18 -1.77 16 28 C -0.14 -1.82 8.08 -25.75 -0.21 -2.03 16 29 C -0.12 -1.78 7.84 -26.28 -0.21 -1.98 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.39 9.74 6.23 -40.82 -0.25 9.48 16 32 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.40 4.34 6.72 -40.82 -0.27 4.07 16 35 H 0.12 0.99 7.83 -51.93 -0.41 0.59 16 36 H 0.12 1.06 7.82 -51.93 -0.41 0.65 16 37 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.12 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.12 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.12 0.23 8.14 -51.93 -0.42 -0.20 16 41 H 0.10 1.74 7.03 -51.93 -0.36 1.37 16 42 H 0.06 0.73 6.42 -51.92 -0.33 0.40 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 382.24 15.07 5.76 5.76 Total: -1.00 -36.05 382.24 -8.12 -44.17 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -6.62 Total: 11.38 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -2.45 Total: 2.68 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.08 Total: -59.47 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.29 Total: -21.72 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.05 -8.12 -44.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078804379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.059 kcal (2) G-P(sol) polarization free energy of solvation -36.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds