Wall clock time and date at job start Tue Mar 31 2020 18:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48493 * 109.47144 * 269.99568 * 3 2 1 5 5 H 1.48500 * 109.47140 * 30.00085 * 3 2 1 6 6 H 1.48502 * 109.46967 * 149.99516 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.08999 * 112.88754 * 23.93049 * 10 9 7 12 12 C 1.53957 * 113.66372 * 252.46113 * 10 9 7 13 13 C 1.53947 * 87.29654 * 220.79461 * 12 10 9 14 14 H 1.09001 * 113.75039 * 270.24741 * 13 12 10 15 15 N 1.46497 * 113.66168 * 139.20574 * 13 12 10 16 16 C 1.34776 * 120.00184 * 107.81602 * 15 13 12 17 17 O 1.21276 * 120.00060 * 359.97438 * 16 15 13 18 18 C 1.50705 * 119.99999 * 180.02562 * 16 15 13 19 19 N 1.46497 * 109.46850 * 179.97438 * 18 16 15 20 20 C 1.33878 * 122.76378 * 269.70523 * 19 18 16 21 21 O 1.21220 * 125.39604 * 359.97438 * 20 19 18 22 22 C 1.51315 * 109.20586 * 179.84627 * 20 19 18 23 23 C 1.54233 * 103.55520 * 0.38590 * 22 20 19 24 24 C 1.33882 * 122.76162 * 89.99896 * 19 18 16 25 25 O 1.21222 * 125.39671 * 0.02562 * 24 19 18 26 26 C 1.52908 * 113.66357 * 155.27728 * 10 9 7 27 27 C 1.52908 * 121.13642 * 13.64835 * 26 10 9 28 28 C 1.53946 * 86.78542 * 209.38235 * 27 26 10 29 29 C 1.52910 * 121.13509 * 265.09062 * 26 10 9 30 30 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 31 31 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 32 32 H 1.09000 * 113.57648 * 335.40139 * 12 10 9 33 33 H 1.08999 * 113.57776 * 106.19339 * 12 10 9 34 34 H 0.97006 * 119.99852 * 287.81226 * 15 13 12 35 35 H 1.09001 * 109.46844 * 299.99839 * 18 16 15 36 36 H 1.09000 * 109.47157 * 59.99231 * 18 16 15 37 37 H 1.09002 * 110.79499 * 241.78278 * 22 20 19 38 38 H 1.08998 * 110.54956 * 118.87504 * 22 20 19 39 39 H 1.08998 * 110.60603 * 241.26350 * 23 22 20 40 40 H 1.09001 * 110.73742 * 118.36482 * 23 22 20 41 41 H 1.09002 * 113.66478 * 323.85928 * 27 26 10 42 42 H 1.09008 * 113.65934 * 94.91137 * 27 26 10 43 43 H 1.08996 * 113.58314 * 270.13495 * 28 27 26 44 44 H 1.08999 * 113.65166 * 139.34935 * 28 27 26 45 45 H 1.09004 * 113.66092 * 265.08702 * 29 26 10 46 46 H 1.08994 * 113.66382 * 36.05415 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4400 0.7002 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0664 -3.5659 0.3985 12 6 1.9937 -4.4014 -1.3511 13 6 1.8251 -5.7000 -0.5416 14 1 2.7677 -6.1856 -0.2893 15 7 0.8425 -6.6249 -1.1119 16 6 1.2540 -7.7601 -1.7108 17 8 2.4376 -8.0156 -1.7779 18 6 0.2432 -8.7113 -2.2980 19 7 0.9375 -9.8591 -2.8867 20 6 1.3374 -9.8868 -4.1640 21 8 1.1799 -8.9939 -4.9686 22 6 2.0200 -11.2080 -4.4434 23 6 1.9356 -11.9509 -3.0944 24 6 1.2191 -10.9691 -2.1931 25 8 0.9434 -11.1579 -1.0279 26 6 1.2654 -4.8257 0.5811 27 6 -0.2406 -4.7175 0.8230 28 6 -0.0394 -5.7165 1.9768 29 6 1.4190 -5.2284 2.0482 30 1 -0.4849 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 1.1202 -4.1445 -1.9502 33 1 2.9238 -4.3587 -1.9178 34 1 -0.1042 -6.4204 -1.0585 35 1 -0.4296 -9.0566 -1.5130 36 1 -0.3316 -8.1996 -3.0699 37 1 3.0598 -11.0531 -4.7315 38 1 1.4863 -11.7581 -5.2183 39 1 2.9333 -12.1655 -2.7115 40 1 1.3588 -12.8703 -3.1956 41 1 -0.5611 -3.7287 1.1512 42 1 -0.8444 -5.1100 0.0047 43 1 -0.1359 -6.7588 1.6730 44 1 -0.6225 -5.4799 2.8668 45 1 2.1410 -6.0291 2.2087 46 1 1.5666 -4.3834 2.7206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078804379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:19 Heat of formation + Delta-G solvation = -61.727662 kcal Electronic energy + Delta-G solvation = -29370.055621 eV Core-core repulsion = 25260.925175 eV Total energy + Delta-G solvation = -4109.130446 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.98495 -41.94549 -40.03898 -39.67368 -36.93201 -36.42255 -35.69236 -34.53806 -34.04064 -31.81593 -29.19779 -27.11453 -26.83327 -26.38053 -25.42005 -24.10244 -23.33640 -21.95922 -21.78335 -20.65544 -19.57125 -19.28905 -18.61018 -18.23631 -17.54108 -17.49823 -17.30109 -16.64902 -16.36289 -16.10110 -15.99400 -15.77836 -15.29561 -15.28994 -14.93012 -14.89576 -14.54056 -14.24511 -13.96123 -13.72130 -13.53621 -13.30106 -13.18674 -13.13497 -12.87783 -12.83818 -12.39343 -12.31121 -12.10452 -12.10196 -11.85253 -11.79303 -11.66184 -11.43015 -11.19844 -11.12716 -11.08780 -10.68755 -10.63586 -10.04088 -8.96958 -7.96155 -5.23275 0.49797 1.25485 1.39551 1.46241 1.47140 1.55359 1.69664 2.19027 2.55534 3.20900 3.26499 3.34198 3.38576 3.52953 3.56672 3.63795 3.71951 3.89130 3.95524 3.99173 4.08398 4.11657 4.20031 4.24086 4.29353 4.49175 4.59696 4.67571 4.72760 4.76842 4.90969 4.92285 4.92909 4.95344 5.02858 5.09064 5.10277 5.25548 5.41261 5.48924 5.54384 5.66567 5.74192 6.26437 6.28381 6.38005 6.69874 7.04326 7.33760 8.09355 8.34570 9.26837 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020152 B = 0.002577 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.101188 B =10861.968908 C =11633.653413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.072 4.072 3 Si 0.969 3.031 4 H -0.290 1.290 5 H -0.295 1.295 6 H -0.271 1.271 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.716 5.716 10 C 0.165 3.835 11 H 0.073 0.927 12 C -0.170 4.170 13 C 0.165 3.835 14 H 0.104 0.896 15 N -0.696 5.696 16 C 0.499 3.501 17 O -0.577 6.577 18 C 0.075 3.925 19 N -0.566 5.566 20 C 0.521 3.479 21 O -0.524 6.524 22 C -0.141 4.141 23 C -0.140 4.140 24 C 0.523 3.477 25 O -0.520 6.520 26 C -0.116 4.116 27 C -0.109 4.109 28 C -0.121 4.121 29 C -0.123 4.123 30 H 0.251 0.749 31 H 0.379 0.621 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.414 0.586 35 H 0.145 0.855 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.155 0.845 39 H 0.138 0.862 40 H 0.156 0.844 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.638 -28.527 -5.587 29.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.264 4.264 3 Si 0.798 3.202 4 H -0.217 1.217 5 H -0.221 1.221 6 H -0.196 1.196 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.354 5.354 10 C 0.054 3.946 11 H 0.091 0.909 12 C -0.212 4.212 13 C 0.059 3.941 14 H 0.122 0.878 15 N -0.348 5.348 16 C 0.285 3.715 17 O -0.456 6.456 18 C -0.050 4.050 19 N -0.308 5.308 20 C 0.313 3.687 21 O -0.398 6.398 22 C -0.180 4.180 23 C -0.179 4.179 24 C 0.315 3.685 25 O -0.394 6.394 26 C -0.118 4.118 27 C -0.147 4.147 28 C -0.159 4.159 29 C -0.160 4.160 30 H 0.060 0.940 31 H 0.213 0.787 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.252 0.748 35 H 0.163 0.837 36 H 0.156 0.844 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.156 0.844 40 H 0.174 0.826 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.093 -28.172 -5.409 28.687 hybrid contribution -0.362 2.002 0.081 2.036 sum -0.270 -26.170 -5.328 26.708 Atomic orbital electron populations 1.69794 1.06390 1.26007 1.59482 1.25481 0.96365 1.00795 1.03780 0.85206 0.77781 0.79895 0.77288 1.21703 1.22128 1.19627 1.19658 0.91425 0.85426 1.41023 0.90957 1.42406 1.05534 1.00294 1.87177 1.21386 0.95139 0.84327 0.93785 0.90882 1.24140 1.01105 0.96436 0.99492 1.21771 0.92498 0.86975 0.92854 0.87793 1.45786 1.11194 1.20467 1.57330 1.21280 0.90081 0.82389 0.77732 1.90675 1.19361 1.76132 1.59443 1.21691 0.94104 0.86894 1.02354 1.46599 1.53440 1.16865 1.13934 1.21811 0.76160 0.90896 0.79875 1.90780 1.55127 1.43474 1.50423 1.22588 1.05068 0.90252 1.00043 1.22591 1.04683 0.98693 0.91912 1.21758 0.76653 0.82899 0.87215 1.90764 1.52814 1.79080 1.16782 1.23352 0.98057 0.95566 0.94821 1.22409 0.93325 0.99900 0.99038 1.22764 0.95849 0.98864 0.98393 1.22670 0.98061 1.00515 0.94786 0.94011 0.78738 0.91012 0.92856 0.74811 0.83718 0.84395 0.84523 0.82720 0.84444 0.82607 0.91199 0.90513 0.89064 0.90836 0.90977 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.40 13.06 21.65 0.28 -58.12 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 3 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 4 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.24 -13.50 9.97 84.03 0.84 -12.66 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.72 -35.48 5.30 -321.55 -1.70 -37.19 16 10 C 0.16 6.54 4.36 45.28 0.20 6.74 16 11 H 0.07 2.98 8.10 -2.39 -0.02 2.96 16 12 C -0.17 -6.16 7.68 31.23 0.24 -5.92 16 13 C 0.16 5.00 4.12 45.28 0.19 5.19 16 14 H 0.10 3.39 7.46 -2.39 -0.02 3.37 16 15 N -0.70 -17.35 5.28 -441.16 -2.33 -19.68 16 16 C 0.50 13.33 7.90 87.66 0.69 14.03 16 17 O -0.58 -19.97 16.03 -3.02 -0.05 -20.02 16 18 C 0.07 1.41 6.04 85.64 0.52 1.93 16 19 N -0.57 -10.59 2.04 -760.73 -1.55 -12.14 16 20 C 0.52 9.40 8.08 87.99 0.71 10.11 16 21 O -0.52 -13.92 17.47 -2.84 -0.05 -13.97 16 22 C -0.14 -0.80 7.03 30.46 0.21 -0.59 16 23 C -0.14 -0.72 7.03 30.46 0.21 -0.51 16 24 C 0.52 8.88 8.08 87.99 0.71 9.59 16 25 O -0.52 -12.66 17.48 -2.85 -0.05 -12.71 16 26 C -0.12 -3.61 1.06 -52.31 -0.06 -3.67 16 27 C -0.11 -3.15 6.78 30.88 0.21 -2.94 16 28 C -0.12 -2.91 8.08 31.23 0.25 -2.66 16 29 C -0.12 -3.47 7.84 30.89 0.24 -3.23 16 30 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.38 19.73 6.23 -92.71 -0.58 19.15 16 32 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.41 8.23 6.72 -92.70 -0.62 7.60 16 35 H 0.15 2.06 7.83 -2.39 -0.02 2.04 16 36 H 0.14 2.19 7.82 -2.39 -0.02 2.17 16 37 H 0.14 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.16 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.16 -0.20 8.14 -2.39 -0.02 -0.22 16 41 H 0.07 2.49 7.03 -2.39 -0.02 2.48 16 42 H 0.08 1.87 6.42 -2.38 -0.02 1.86 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 46 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -81.46 382.24 2.04 -79.42 By element: Atomic # 1 Polarization: 34.38 SS G_CDS: -0.17 Total: 34.21 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 5.64 Total: 11.78 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -5.30 Total: -127.12 kcal Atomic # 8 Polarization: -46.55 SS G_CDS: -0.15 Total: -46.70 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -81.46 2.04 -79.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078804379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.695 kcal (2) G-P(sol) polarization free energy of solvation -81.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds