Wall clock time and date at job start Tue Mar 31 2020 18:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99866 * 2 1 4 4 H 1.48498 * 109.47050 * 269.99651 * 3 2 1 5 5 H 1.48502 * 109.47272 * 29.99560 * 3 2 1 6 6 H 1.48503 * 109.46931 * 149.99845 * 3 2 1 7 7 C 1.38813 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99401 * 180.02562 * 7 2 1 9 9 N 1.36929 * 120.00248 * 0.02562 * 7 2 1 10 10 C 1.46502 * 120.00411 * 179.97438 * 9 7 2 11 11 H 1.08999 * 112.87973 * 333.15299 * 10 9 7 12 12 C 1.53950 * 113.66334 * 104.49786 * 10 9 7 13 13 C 1.53952 * 87.29213 * 89.73870 * 12 10 9 14 14 H 1.09003 * 113.66482 * 270.16737 * 13 12 10 15 15 N 1.46500 * 113.65873 * 139.20581 * 13 12 10 16 16 C 1.34777 * 120.00192 * 106.01371 * 15 13 12 17 17 O 1.21281 * 119.99697 * 0.02562 * 16 15 13 18 18 C 1.50700 * 120.00127 * 179.97438 * 16 15 13 19 19 N 1.46498 * 109.46803 * 179.97438 * 18 16 15 20 20 C 1.33875 * 122.76811 * 269.71151 * 19 18 16 21 21 O 1.21235 * 125.39250 * 0.23270 * 20 19 18 22 22 C 1.51315 * 109.21241 * 180.27054 * 20 19 18 23 23 C 1.54236 * 103.55147 * 0.02562 * 22 20 19 24 24 C 1.33884 * 122.76141 * 90.00724 * 19 18 16 25 25 O 1.21228 * 125.39071 * 359.74414 * 24 19 18 26 26 C 1.52906 * 86.88426 * 24.68674 * 13 12 10 27 27 C 1.52910 * 121.14298 * 209.42250 * 26 13 12 28 28 C 1.53957 * 86.78419 * 209.37947 * 27 26 13 29 29 C 1.52918 * 121.13659 * 100.85872 * 26 13 12 30 30 H 0.97004 * 120.00030 * 0.02562 * 1 2 3 31 31 H 0.97002 * 120.00047 * 359.97438 * 9 7 2 32 32 H 1.09000 * 113.58063 * 335.14012 * 12 10 9 33 33 H 1.08999 * 113.58044 * 204.34012 * 12 10 9 34 34 H 0.97001 * 120.00495 * 286.00816 * 15 13 12 35 35 H 1.08997 * 109.46737 * 60.00674 * 18 16 15 36 36 H 1.08988 * 109.47293 * 300.00058 * 18 16 15 37 37 H 1.08995 * 110.60439 * 241.48575 * 22 20 19 38 38 H 1.09002 * 110.73770 * 118.57768 * 22 20 19 39 39 H 1.08996 * 110.59909 * 241.48367 * 23 22 20 40 40 H 1.08994 * 110.73574 * 118.58319 * 23 22 20 41 41 H 1.09001 * 113.66022 * 323.84732 * 27 26 13 42 42 H 1.08998 * 113.66011 * 94.90275 * 27 26 13 43 43 H 1.09000 * 113.57599 * 270.13100 * 28 27 26 44 44 H 1.09000 * 113.64760 * 139.34894 * 28 27 26 45 45 H 1.08995 * 113.66238 * 265.09395 * 29 26 13 46 46 H 1.08998 * 113.66193 * 36.06536 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 3.0459 -3.5758 -0.4530 12 6 2.0613 -4.3684 1.3657 13 6 0.7680 -5.0739 0.9190 14 1 -0.1397 -4.5291 1.1785 15 7 0.7102 -6.4888 1.2946 16 6 -0.0933 -6.8867 2.3008 17 8 -0.7689 -6.0734 2.8951 18 6 -0.1531 -8.3422 2.6869 19 7 -1.0912 -8.5142 3.7988 20 6 -0.7148 -8.4450 5.0817 21 8 0.4134 -8.2339 5.4720 22 6 -1.9203 -8.6731 5.9674 23 6 -3.0708 -8.8890 4.9631 24 6 -2.3946 -8.7594 3.6158 25 8 -2.9455 -8.8620 2.5408 26 6 1.2351 -4.8390 -0.5179 27 6 0.2305 -4.6658 -1.6577 28 6 1.3042 -5.2714 -2.5801 29 6 1.8850 -5.9591 -1.3312 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3881 0.0005 32 1 1.9204 -3.6932 2.2097 33 1 2.9034 -5.0469 1.5018 34 1 1.2502 -7.1393 0.8191 35 1 0.8378 -8.6779 2.9927 36 1 -0.4888 -8.9309 1.8333 37 1 -2.1115 -7.7976 6.5879 38 1 -1.7816 -9.5587 6.5875 39 1 -3.8346 -8.1208 5.0839 40 1 -3.5049 -9.8818 5.0812 41 1 -0.6590 -5.2873 -1.5550 42 1 -0.0019 -3.6246 -1.8815 43 1 1.9709 -4.5291 -3.0190 44 1 0.9051 -5.9692 -3.3162 45 1 2.9743 -5.9510 -1.2942 46 1 1.4615 -6.9441 -1.1356 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078804381.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:23 Heat of formation + Delta-G solvation = -35.649301 kcal Electronic energy + Delta-G solvation = -29441.053146 eV Core-core repulsion = 25333.053542 eV Total energy + Delta-G solvation = -4107.999604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.20830 -40.55948 -38.83000 -38.81609 -36.07772 -35.06756 -34.12145 -33.76560 -32.38395 -29.80954 -28.23221 -26.50455 -25.55125 -24.47693 -24.19536 -22.71098 -22.69423 -20.91200 -20.37719 -19.71898 -18.20788 -17.78370 -17.39790 -17.02448 -16.76513 -16.56670 -15.96704 -15.21338 -15.02012 -14.94066 -14.84053 -14.46970 -14.37342 -14.20839 -14.00089 -13.63402 -13.13055 -13.09037 -12.83580 -12.67559 -12.34191 -12.15038 -11.92006 -11.74310 -11.64709 -11.39548 -10.98664 -10.91209 -10.83563 -10.75048 -10.62374 -10.33810 -10.17357 -10.06517 -9.84933 -9.76392 -9.56210 -9.41984 -8.87022 -8.66585 -7.00271 -5.79200 -3.09088 1.25206 2.02766 2.43021 2.57909 3.28521 3.42902 3.48179 3.50120 3.73198 3.87047 4.06812 4.45407 4.50771 4.61813 4.70318 4.75730 4.84362 4.88411 4.97193 5.05916 5.07197 5.17358 5.22573 5.25526 5.31924 5.43748 5.64156 5.79144 5.91101 5.93886 5.99771 6.03898 6.11175 6.19419 6.41030 6.47235 6.56120 6.61151 6.70397 6.76991 6.85862 7.01668 7.06741 7.42649 7.58070 7.69436 8.22602 8.38747 9.49937 10.05813 10.40365 11.42828 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014260 B = 0.002873 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.057918 B = 9742.752916 C =10613.796998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.701 5.701 10 C 0.198 3.802 11 H 0.067 0.933 12 C -0.182 4.182 13 C 0.140 3.860 14 H 0.113 0.887 15 N -0.709 5.709 16 C 0.498 3.502 17 O -0.529 6.529 18 C 0.077 3.923 19 N -0.558 5.558 20 C 0.531 3.469 21 O -0.479 6.479 22 C -0.154 4.154 23 C -0.154 4.154 24 C 0.531 3.469 25 O -0.480 6.480 26 C -0.123 4.123 27 C -0.126 4.126 28 C -0.133 4.133 29 C -0.115 4.115 30 H 0.256 0.744 31 H 0.387 0.613 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.397 0.603 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.350 -23.989 6.382 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.084 3.916 11 H 0.085 0.915 12 C -0.224 4.224 13 C 0.036 3.964 14 H 0.131 0.869 15 N -0.360 5.360 16 C 0.282 3.718 17 O -0.405 6.405 18 C -0.048 4.048 19 N -0.301 5.301 20 C 0.320 3.680 21 O -0.350 6.350 22 C -0.194 4.194 23 C -0.194 4.194 24 C 0.320 3.680 25 O -0.351 6.351 26 C -0.125 4.125 27 C -0.163 4.163 28 C -0.170 4.170 29 C -0.153 4.153 30 H 0.066 0.934 31 H 0.221 0.779 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.232 0.768 35 H 0.140 0.860 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.417 -23.131 6.425 24.128 hybrid contribution 0.422 0.637 -0.221 0.796 sum -1.995 -22.494 6.204 23.419 Atomic orbital electron populations 1.69667 1.05127 1.25837 1.57026 1.24765 0.95510 0.97768 1.02582 0.86177 0.78688 0.83737 0.77485 1.21679 1.21753 1.20695 1.19240 0.91068 0.83804 1.43416 0.90982 1.42114 1.05814 0.99119 1.86861 1.20664 0.94264 0.84609 0.92018 0.91457 1.24294 0.96065 0.99680 1.02369 1.22450 0.99846 0.79213 0.94851 0.86913 1.45973 1.44451 1.10632 1.34933 1.20637 0.80155 0.90241 0.80764 1.90747 1.42858 1.54345 1.52533 1.21601 0.95901 0.96174 0.91123 1.46301 1.11136 1.63956 1.08718 1.20832 0.90554 0.73990 0.82605 1.90796 1.22277 1.44265 1.77641 1.22448 0.91632 1.06801 0.98481 1.22450 0.99265 1.06934 0.90728 1.20835 0.81280 0.73697 0.92153 1.90791 1.67938 1.46358 1.29965 1.23615 0.98597 0.98366 0.91956 1.22639 0.96066 1.02376 0.95265 1.22735 0.98936 0.99592 0.95755 1.22531 0.99934 0.96533 0.96330 0.93379 0.77855 0.90897 0.91202 0.76843 0.85985 0.86015 0.85879 0.86068 0.85890 0.86065 0.91030 0.89885 0.90011 0.92216 0.91328 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.24 -6.72 9.98 -15.06 -0.15 -6.87 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.70 -17.36 4.91 -52.90 -0.26 -17.62 16 10 C 0.20 3.87 4.36 -67.38 -0.29 3.57 16 11 H 0.07 1.31 8.12 -51.93 -0.42 0.89 16 12 C -0.18 -3.29 7.68 -25.74 -0.20 -3.49 16 13 C 0.14 2.38 4.02 -67.48 -0.27 2.11 16 14 H 0.11 2.35 7.50 -51.93 -0.39 1.96 16 15 N -0.71 -9.52 5.27 -53.37 -0.28 -9.80 16 16 C 0.50 7.38 7.90 -10.99 -0.09 7.30 16 17 O -0.53 -10.33 16.05 5.56 0.09 -10.24 16 18 C 0.08 0.81 6.03 -5.19 -0.03 0.78 16 19 N -0.56 -6.03 2.04 -116.63 -0.24 -6.27 16 20 C 0.53 5.56 8.08 -11.09 -0.09 5.47 16 21 O -0.48 -6.67 17.47 5.60 0.10 -6.57 16 22 C -0.15 -0.83 7.03 -26.93 -0.19 -1.02 16 23 C -0.15 -0.82 7.03 -26.94 -0.19 -1.01 16 24 C 0.53 5.52 8.08 -11.09 -0.09 5.43 16 25 O -0.48 -6.61 17.48 5.60 0.10 -6.51 16 26 C -0.12 -1.95 0.92 -154.61 -0.14 -2.10 16 27 C -0.13 -2.04 7.60 -26.28 -0.20 -2.24 16 28 C -0.13 -1.79 8.08 -25.74 -0.21 -1.99 16 29 C -0.12 -1.41 7.16 -26.28 -0.19 -1.60 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.39 10.32 7.46 -40.82 -0.30 10.02 16 32 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 33 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.40 3.95 6.98 -40.82 -0.28 3.66 16 35 H 0.12 1.02 7.82 -51.93 -0.41 0.62 16 36 H 0.12 1.01 7.83 -51.94 -0.41 0.60 16 37 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.08 1.60 7.50 -51.93 -0.39 1.21 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 0.75 6.99 -51.93 -0.36 0.39 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -37.06 384.36 -8.16 -45.22 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -6.74 Total: 12.03 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -2.42 Total: 3.96 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.05 Total: -61.07 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.28 Total: -23.33 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.06 -8.16 -45.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078804381.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.574 kcal (2) G-P(sol) polarization free energy of solvation -37.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds