Wall clock time and date at job start Tue Mar 31 2020 18:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00335 * 2 1 4 4 H 1.48503 * 109.47047 * 240.00073 * 3 2 1 5 5 H 1.48499 * 109.47223 * 119.99855 * 3 2 1 6 6 H 1.48503 * 109.47024 * 359.97438 * 3 2 1 7 7 C 1.38816 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00318 * 207.26377 * 7 2 1 9 9 N 1.36933 * 119.99961 * 27.26821 * 7 2 1 10 10 C 1.47029 * 125.64936 * 193.62770 * 9 7 2 11 11 C 1.54320 * 107.27322 * 181.02206 * 10 9 7 12 12 H 1.09001 * 110.72130 * 140.73309 * 11 10 9 13 13 N 1.46499 * 110.72144 * 263.83726 * 11 10 9 14 14 C 1.34779 * 119.99683 * 273.53918 * 13 11 10 15 15 O 1.21602 * 120.00074 * 0.02562 * 14 13 11 16 16 C 1.47399 * 120.00038 * 179.97438 * 14 13 11 17 17 C 1.37363 * 128.56212 * 359.67956 * 16 14 13 18 18 O 1.33497 * 106.33773 * 179.90842 * 17 16 14 19 19 N 1.20655 * 113.15711 * 0.39678 * 18 17 16 20 20 C 1.30018 * 112.30418 * 359.75001 * 19 18 17 21 21 C 1.50693 * 127.33674 * 180.02562 * 20 19 18 22 22 C 1.54269 * 110.03335 * 57.90741 * 21 20 19 23 23 C 1.54965 * 104.16023 * 217.13841 * 22 21 20 24 24 C 1.54883 * 102.77753 * 37.88841 * 23 22 21 25 25 C 1.53873 * 110.03265 * 300.69150 * 21 20 19 26 26 C 1.55163 * 102.94213 * 22.19869 * 11 10 9 27 27 H 1.08998 * 111.00445 * 82.56657 * 26 11 10 28 28 O 1.42894 * 111.00402 * 206.38691 * 26 11 10 29 29 C 1.47425 * 125.64884 * 13.32323 * 9 7 2 30 30 H 0.97000 * 119.99718 * 185.85160 * 1 2 3 31 31 H 1.08996 * 109.88404 * 300.44326 * 10 9 7 32 32 H 1.09008 * 109.87392 * 61.60917 * 10 9 7 33 33 H 0.96996 * 120.00220 * 93.54487 * 13 11 10 34 34 H 1.07998 * 126.83148 * 359.97438 * 17 16 14 35 35 H 1.09002 * 110.01638 * 179.29964 * 21 20 19 36 36 H 1.09000 * 110.48796 * 335.78748 * 22 21 20 37 37 H 1.09001 * 110.48272 * 98.42621 * 22 21 20 38 38 H 1.09004 * 110.71485 * 279.57235 * 23 22 21 39 39 H 1.09002 * 110.92221 * 156.29966 * 23 22 21 40 40 H 1.09007 * 110.48672 * 203.40838 * 24 23 22 41 41 H 1.09000 * 110.49005 * 80.76574 * 24 23 22 42 42 H 1.09001 * 110.03538 * 238.56733 * 25 21 20 43 43 H 1.09001 * 110.03471 * 0.02562 * 25 21 20 44 44 H 0.96701 * 114.00090 * 179.97438 * 28 26 11 45 45 H 1.08995 * 110.36729 * 274.74866 * 29 9 7 46 46 H 1.08999 * 110.36759 * 37.07366 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 3.1040 1.6963 1.2125 6 1 1.2853 2.7464 -0.0006 7 6 2.0102 -1.2022 0.0005 8 1 3.0002 -1.2541 0.4290 9 7 1.4396 -2.3224 -0.5423 10 6 1.9205 -3.7005 -0.3655 11 6 0.9844 -4.6202 -1.1775 12 1 1.5514 -5.4116 -1.6678 13 7 -0.0578 -5.1877 -0.3184 14 6 0.1794 -6.3227 0.3686 15 8 1.2586 -6.8754 0.2758 16 6 -0.8689 -6.8935 1.2334 17 6 -2.1351 -6.4175 1.4721 18 8 -2.7058 -7.2768 2.3195 19 7 -1.9793 -8.1879 2.6323 20 6 -0.8150 -8.1098 2.0590 21 6 0.3428 -9.0627 2.2080 22 6 -0.0885 -10.4865 1.7996 23 6 0.6575 -11.4092 2.7964 24 6 0.5922 -10.6074 4.1199 25 6 0.7759 -9.1395 3.6825 26 6 0.3679 -3.6531 -2.2226 27 1 1.0377 -3.5168 -3.0716 28 8 -0.9139 -4.1144 -2.6538 29 6 0.2377 -2.3470 -1.3956 30 1 -0.4850 -0.8357 0.0856 31 1 2.9409 -3.7878 -0.7384 32 1 1.8845 -3.9731 0.6894 33 1 -0.9185 -4.7467 -0.2441 34 1 -2.5808 -5.5261 1.0559 35 1 1.1785 -8.7341 1.5900 36 1 -1.1670 -10.6035 1.9056 37 1 0.2205 -10.6999 0.7763 38 1 1.6915 -11.5572 2.4849 39 1 0.1457 -12.3661 2.8987 40 1 1.3978 -10.9097 4.7892 41 1 -0.3762 -10.7438 4.6013 42 1 1.8220 -8.8490 3.7801 43 1 0.1483 -8.4879 4.2905 44 1 -1.3386 -3.5419 -3.3072 45 1 -0.6628 -2.3719 -0.7820 46 1 0.2237 -1.4801 -2.0563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083516373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:05 Heat of formation + Delta-G solvation = -7.464745 kcal Electronic energy + Delta-G solvation = -29579.229784 eV Core-core repulsion = 25472.452354 eV Total energy + Delta-G solvation = -4106.777430 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.98926 -39.82098 -38.46792 -37.92005 -35.40505 -34.10768 -33.77387 -32.37276 -31.45935 -28.94549 -28.87586 -28.41303 -27.49691 -24.89416 -24.12355 -22.63784 -21.13953 -20.80508 -20.58311 -20.13876 -19.57979 -18.36583 -17.72803 -17.68590 -17.14084 -16.68192 -15.92325 -15.81157 -15.28733 -14.85043 -14.70386 -14.47725 -13.78637 -13.68649 -13.62532 -13.53097 -13.48998 -13.05463 -12.67044 -12.53820 -12.04733 -11.90130 -11.72914 -11.38009 -11.34851 -11.28046 -11.21672 -10.87780 -10.84331 -10.74792 -10.64909 -10.49905 -10.08964 -9.92627 -9.90527 -9.87394 -9.81355 -9.48297 -8.85192 -8.53667 -7.10216 -6.20734 -3.24659 1.00775 1.71457 2.82849 3.25089 3.28914 3.45027 3.47994 3.65902 3.87831 4.12112 4.20686 4.46771 4.51203 4.52651 4.73896 4.83452 4.94050 5.02670 5.17423 5.21133 5.24833 5.26207 5.34432 5.39606 5.45808 5.48972 5.51945 5.53841 5.64836 5.71660 5.81714 5.87178 5.90857 5.96023 6.02648 6.14989 6.19958 6.29898 6.50067 6.59611 6.74111 6.82013 7.58773 7.65075 7.76015 8.11234 8.28063 8.36520 8.88582 9.69159 10.19535 11.12450 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016729 B = 0.002814 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.296979 B = 9948.446026 C =10210.959149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.025 4.025 3 Si 1.065 2.935 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.336 4.336 8 H 0.069 0.931 9 N -0.599 5.599 10 C 0.126 3.874 11 C 0.147 3.853 12 H 0.097 0.903 13 N -0.692 5.692 14 C 0.595 3.405 15 O -0.536 6.536 16 C -0.248 4.248 17 C -0.005 4.005 18 O 0.095 5.905 19 N -0.357 5.357 20 C 0.081 3.919 21 C -0.023 4.023 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.114 4.114 26 C 0.074 3.926 27 H 0.078 0.922 28 O -0.563 6.563 29 C 0.119 3.881 30 H 0.267 0.733 31 H 0.041 0.959 32 H 0.035 0.965 33 H 0.403 0.597 34 H 0.226 0.774 35 H 0.115 0.885 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.380 0.620 45 H 0.033 0.967 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.997 -17.216 0.480 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.226 4.226 3 Si 0.894 3.106 4 H -0.220 1.220 5 H -0.220 1.220 6 H -0.210 1.210 7 C -0.464 4.464 8 H 0.087 0.913 9 N -0.328 5.328 10 C -0.001 4.001 11 C 0.042 3.958 12 H 0.115 0.885 13 N -0.342 5.342 14 C 0.381 3.619 15 O -0.414 6.414 16 C -0.255 4.255 17 C -0.087 4.087 18 O 0.036 5.964 19 N -0.064 5.064 20 C -0.082 4.082 21 C -0.042 4.042 22 C -0.152 4.152 23 C -0.160 4.160 24 C -0.160 4.160 25 C -0.153 4.153 26 C 0.013 3.987 27 H 0.096 0.904 28 O -0.368 6.368 29 C -0.008 4.008 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.238 0.762 34 H 0.242 0.758 35 H 0.133 0.867 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.228 0.772 45 H 0.051 0.949 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.791 -17.174 1.642 17.664 hybrid contribution 0.082 -0.241 -0.743 0.785 sum -3.709 -17.416 0.899 17.829 Atomic orbital electron populations 1.70826 1.06569 1.30077 1.48611 1.25753 0.96457 1.00987 0.99421 0.83519 0.74820 0.75965 0.76274 1.22050 1.21955 1.21041 1.19791 0.99514 0.87489 1.39571 0.91280 1.44417 1.30797 1.01229 1.56374 1.21785 0.95572 0.85158 0.97536 1.22037 0.88824 0.95071 0.89874 0.88492 1.45494 1.17954 1.24903 1.45844 1.16785 0.85790 0.80318 0.78978 1.90746 1.24628 1.61193 1.64824 1.22395 0.96534 0.99687 1.06875 1.26468 0.92956 0.96577 0.92743 1.84576 1.37686 1.26310 1.47839 1.73600 1.03956 1.07963 1.20840 1.24739 0.94392 0.95147 0.93934 1.20490 0.93144 0.92037 0.98524 1.22448 1.00617 0.92673 0.99496 1.22497 1.00598 0.97979 0.94970 1.22355 1.01752 0.94550 0.97347 1.22191 1.01775 0.97262 0.94039 1.23507 0.84702 0.94833 0.95649 0.90397 1.86365 1.33136 1.53212 1.64077 1.22224 0.91171 0.94584 0.92788 0.92102 0.94143 0.94740 0.76176 0.75768 0.86672 0.91286 0.91112 0.91187 0.91432 0.91516 0.91548 0.90925 0.91700 0.77212 0.94911 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.48 12.82 55.49 0.71 -25.77 16 2 C -0.03 -0.69 5.09 -17.43 -0.09 -0.78 16 3 Si 1.06 24.60 30.00 -169.99 -5.10 19.50 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.34 -9.20 10.05 -15.06 -0.15 -9.35 16 8 H 0.07 1.90 7.96 -52.48 -0.42 1.49 16 9 N -0.60 -14.42 3.33 -169.92 -0.57 -14.99 16 10 C 0.13 2.61 6.98 -3.06 -0.02 2.59 16 11 C 0.15 2.52 3.14 -66.09 -0.21 2.31 16 12 H 0.10 1.63 7.69 -51.93 -0.40 1.23 16 13 N -0.69 -10.86 4.77 -53.11 -0.25 -11.11 16 14 C 0.60 9.67 7.81 -12.53 -0.10 9.57 16 15 O -0.54 -10.00 15.00 5.28 0.08 -9.92 16 16 C -0.25 -3.47 6.47 -102.89 -0.67 -4.14 16 17 C -0.01 -0.06 11.85 30.41 0.36 0.30 16 18 O 0.10 1.16 11.06 18.64 0.21 1.36 16 19 N -0.36 -4.85 11.84 34.78 0.41 -4.44 16 20 C 0.08 1.12 5.78 -79.77 -0.46 0.66 16 21 C -0.02 -0.29 3.36 -90.66 -0.30 -0.59 16 22 C -0.11 -1.22 6.36 -25.03 -0.16 -1.38 16 23 C -0.12 -1.09 6.91 -24.70 -0.17 -1.26 16 24 C -0.12 -1.14 6.83 -25.07 -0.17 -1.31 16 25 C -0.11 -1.30 6.45 -25.61 -0.17 -1.46 16 26 C 0.07 1.19 4.23 -24.45 -0.10 1.09 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 O -0.56 -7.65 12.63 -35.23 -0.45 -8.10 16 29 C 0.12 2.48 4.93 -2.40 -0.01 2.47 16 30 H 0.27 7.61 5.83 -40.82 -0.24 7.37 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.03 0.78 8.04 -51.92 -0.42 0.36 16 33 H 0.40 5.76 7.38 -40.82 -0.30 5.46 16 34 H 0.23 1.63 7.68 -52.49 -0.40 1.23 16 35 H 0.12 1.64 6.33 -51.93 -0.33 1.31 16 36 H 0.07 0.78 7.72 -51.93 -0.40 0.38 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 44 H 0.38 3.72 9.12 45.56 0.42 4.13 16 45 H 0.03 0.73 6.84 -51.93 -0.36 0.37 16 46 H 0.06 1.34 7.73 -51.93 -0.40 0.93 16 LS Contribution 374.15 15.07 5.64 5.64 Total: -1.00 -32.98 374.15 -7.56 -40.54 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.82 Total: 8.57 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.42 Total: -1.28 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: 0.30 Total: -56.31 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.16 Total: -16.65 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.10 Total: 19.50 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.98 -7.56 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083516373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.073 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds