Wall clock time and date at job start Tue Mar 31 2020 18:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00335 * 2 1 4 4 H 1.48503 * 109.47047 * 240.00073 * 3 2 1 5 5 H 1.48499 * 109.47223 * 119.99855 * 3 2 1 6 6 H 1.48503 * 109.47024 * 359.97438 * 3 2 1 7 7 C 1.38816 * 119.99775 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00318 * 207.26377 * 7 2 1 9 9 N 1.36933 * 119.99961 * 27.26821 * 7 2 1 10 10 C 1.47029 * 125.64936 * 193.62770 * 9 7 2 11 11 C 1.54320 * 107.27322 * 181.02206 * 10 9 7 12 12 H 1.09001 * 110.72130 * 140.73309 * 11 10 9 13 13 N 1.46499 * 110.72144 * 263.83726 * 11 10 9 14 14 C 1.34779 * 119.99683 * 273.53918 * 13 11 10 15 15 O 1.21602 * 120.00074 * 0.02562 * 14 13 11 16 16 C 1.47399 * 120.00038 * 179.97438 * 14 13 11 17 17 C 1.37363 * 128.56212 * 359.67956 * 16 14 13 18 18 O 1.33497 * 106.33773 * 179.90842 * 17 16 14 19 19 N 1.20655 * 113.15711 * 0.39678 * 18 17 16 20 20 C 1.30018 * 112.30418 * 359.75001 * 19 18 17 21 21 C 1.50693 * 127.33674 * 180.02562 * 20 19 18 22 22 C 1.54269 * 110.03335 * 57.90741 * 21 20 19 23 23 C 1.54965 * 104.16023 * 217.13841 * 22 21 20 24 24 C 1.54883 * 102.77753 * 37.88841 * 23 22 21 25 25 C 1.53873 * 110.03265 * 300.69150 * 21 20 19 26 26 C 1.55163 * 102.94213 * 22.19869 * 11 10 9 27 27 H 1.08998 * 111.00445 * 82.56657 * 26 11 10 28 28 O 1.42894 * 111.00402 * 206.38691 * 26 11 10 29 29 C 1.47425 * 125.64884 * 13.32323 * 9 7 2 30 30 H 0.97000 * 119.99718 * 185.85160 * 1 2 3 31 31 H 1.08996 * 109.88404 * 300.44326 * 10 9 7 32 32 H 1.09008 * 109.87392 * 61.60917 * 10 9 7 33 33 H 0.96996 * 120.00220 * 93.54487 * 13 11 10 34 34 H 1.07998 * 126.83148 * 359.97438 * 17 16 14 35 35 H 1.09002 * 110.01638 * 179.29964 * 21 20 19 36 36 H 1.09000 * 110.48796 * 335.78748 * 22 21 20 37 37 H 1.09001 * 110.48272 * 98.42621 * 22 21 20 38 38 H 1.09004 * 110.71485 * 279.57235 * 23 22 21 39 39 H 1.09002 * 110.92221 * 156.29966 * 23 22 21 40 40 H 1.09007 * 110.48672 * 203.40838 * 24 23 22 41 41 H 1.09000 * 110.49005 * 80.76574 * 24 23 22 42 42 H 1.09001 * 110.03538 * 238.56733 * 25 21 20 43 43 H 1.09001 * 110.03471 * 0.02562 * 25 21 20 44 44 H 0.96701 * 114.00090 * 179.97438 * 28 26 11 45 45 H 1.08995 * 110.36729 * 274.74866 * 29 9 7 46 46 H 1.08999 * 110.36759 * 37.07366 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 3.1040 1.6963 1.2125 6 1 1.2853 2.7464 -0.0006 7 6 2.0102 -1.2022 0.0005 8 1 3.0002 -1.2541 0.4290 9 7 1.4396 -2.3224 -0.5423 10 6 1.9205 -3.7005 -0.3655 11 6 0.9844 -4.6202 -1.1775 12 1 1.5514 -5.4116 -1.6678 13 7 -0.0578 -5.1877 -0.3184 14 6 0.1794 -6.3227 0.3686 15 8 1.2586 -6.8754 0.2758 16 6 -0.8689 -6.8935 1.2334 17 6 -2.1351 -6.4175 1.4721 18 8 -2.7058 -7.2768 2.3195 19 7 -1.9793 -8.1879 2.6323 20 6 -0.8150 -8.1098 2.0590 21 6 0.3428 -9.0627 2.2080 22 6 -0.0885 -10.4865 1.7996 23 6 0.6575 -11.4092 2.7964 24 6 0.5922 -10.6074 4.1199 25 6 0.7759 -9.1395 3.6825 26 6 0.3679 -3.6531 -2.2226 27 1 1.0377 -3.5168 -3.0716 28 8 -0.9139 -4.1144 -2.6538 29 6 0.2377 -2.3470 -1.3956 30 1 -0.4850 -0.8357 0.0856 31 1 2.9409 -3.7878 -0.7384 32 1 1.8845 -3.9731 0.6894 33 1 -0.9185 -4.7467 -0.2441 34 1 -2.5808 -5.5261 1.0559 35 1 1.1785 -8.7341 1.5900 36 1 -1.1670 -10.6035 1.9056 37 1 0.2205 -10.6999 0.7763 38 1 1.6915 -11.5572 2.4849 39 1 0.1457 -12.3661 2.8987 40 1 1.3978 -10.9097 4.7892 41 1 -0.3762 -10.7438 4.6013 42 1 1.8220 -8.8490 3.7801 43 1 0.1483 -8.4879 4.2905 44 1 -1.3386 -3.5419 -3.3072 45 1 -0.6628 -2.3719 -0.7820 46 1 0.2237 -1.4801 -2.0563 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083516373.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:04 Heat of formation + Delta-G solvation = -30.972459 kcal Electronic energy + Delta-G solvation = -29580.249155 eV Core-core repulsion = 25472.452354 eV Total energy + Delta-G solvation = -4107.796801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.02121 -41.18880 -39.57373 -39.12445 -36.84228 -35.58839 -34.81173 -33.84293 -32.84440 -30.21627 -29.72477 -29.71219 -29.07769 -26.45618 -25.61443 -23.58840 -22.50162 -22.18902 -21.61908 -21.46820 -20.59396 -19.74338 -19.38154 -18.74496 -18.40481 -17.80095 -17.17437 -16.76325 -16.48937 -16.29676 -16.15489 -15.64291 -15.53830 -15.32395 -14.77515 -14.61472 -14.41495 -14.36122 -14.24336 -14.04974 -13.38180 -12.97644 -12.89936 -12.85386 -12.70364 -12.51705 -12.23638 -12.09691 -12.00837 -11.96829 -11.90605 -11.73937 -11.71944 -11.56644 -11.18802 -10.97629 -10.96114 -10.82209 -10.56554 -10.21846 -9.08917 -8.35355 -5.35899 -0.01042 0.66142 1.58869 1.64977 1.74968 1.84600 2.04962 2.16776 2.59648 2.85859 2.94599 3.14910 3.17855 3.48445 3.60405 3.63412 3.64678 3.78433 3.83238 3.87766 3.95844 4.13930 4.36074 4.37136 4.41708 4.45707 4.50255 4.50888 4.60324 4.72177 4.73471 4.79309 4.82514 4.91217 4.93815 4.98514 5.08237 5.16591 5.18617 5.28944 5.36534 5.41006 5.60603 6.28407 6.36900 6.76341 6.84836 7.02824 7.12614 7.64973 8.18805 8.97898 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016729 B = 0.002814 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.296979 B = 9948.446026 C =10210.959149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.071 4.071 3 Si 1.114 2.886 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.290 1.290 7 C -0.350 4.350 8 H 0.058 0.942 9 N -0.618 5.618 10 C 0.127 3.873 11 C 0.156 3.844 12 H 0.107 0.893 13 N -0.687 5.687 14 C 0.597 3.403 15 O -0.566 6.566 16 C -0.281 4.281 17 C 0.028 3.972 18 O 0.099 5.901 19 N -0.368 5.368 20 C 0.072 3.928 21 C -0.027 4.027 22 C -0.111 4.111 23 C -0.117 4.117 24 C -0.118 4.118 25 C -0.115 4.115 26 C 0.101 3.899 27 H 0.095 0.905 28 O -0.556 6.556 29 C 0.124 3.876 30 H 0.259 0.741 31 H 0.041 0.959 32 H 0.011 0.989 33 H 0.411 0.589 34 H 0.265 0.735 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.401 0.599 45 H 0.021 0.979 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 -17.948 -0.124 18.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.267 4.267 3 Si 0.938 3.062 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.216 1.216 7 C -0.478 4.478 8 H 0.076 0.924 9 N -0.347 5.347 10 C 0.000 4.000 11 C 0.050 3.950 12 H 0.125 0.875 13 N -0.337 5.337 14 C 0.384 3.616 15 O -0.446 6.446 16 C -0.289 4.289 17 C -0.055 4.055 18 O 0.041 5.959 19 N -0.075 5.075 20 C -0.091 4.091 21 C -0.047 4.047 22 C -0.149 4.149 23 C -0.155 4.155 24 C -0.155 4.155 25 C -0.153 4.153 26 C 0.040 3.960 27 H 0.113 0.887 28 O -0.364 6.364 29 C -0.002 4.002 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.029 0.971 33 H 0.247 0.753 34 H 0.280 0.720 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.252 0.748 45 H 0.038 0.962 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.417 -17.930 1.024 18.495 hybrid contribution 0.224 -0.015 -0.533 0.579 sum -4.193 -17.945 0.491 18.435 Atomic orbital electron populations 1.70919 1.07282 1.29681 1.50646 1.27020 0.96635 1.03971 0.99120 0.82863 0.73895 0.72210 0.77208 1.20539 1.20631 1.21550 1.20004 0.99265 0.89050 1.39509 0.92409 1.44611 1.31606 1.01712 1.56778 1.21826 0.96698 0.84561 0.96876 1.21851 0.88817 0.94662 0.89679 0.87516 1.45404 1.17904 1.24767 1.45645 1.17030 0.85823 0.80024 0.78697 1.90726 1.26001 1.62053 1.65835 1.22271 0.97454 1.00836 1.08324 1.27105 0.91601 0.96287 0.90459 1.84568 1.37404 1.26195 1.47755 1.73598 1.03940 1.08648 1.21313 1.24981 0.94798 0.95401 0.93874 1.20524 0.92280 0.92942 0.98921 1.22428 1.00424 0.91919 1.00153 1.22502 1.00964 0.98115 0.93879 1.22345 1.02318 0.92983 0.97886 1.22195 1.01341 0.98628 0.93125 1.23109 0.86222 0.91451 0.95182 0.88685 1.86342 1.31889 1.53352 1.64798 1.22181 0.89429 0.96249 0.92301 0.93019 0.94067 0.97074 0.75266 0.71975 0.88718 0.91875 0.90997 0.90467 0.89779 0.89940 0.91629 0.90972 0.93066 0.74812 0.96159 0.94807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.80 12.82 21.65 0.28 -54.52 16 2 C -0.07 -3.93 5.09 84.86 0.43 -3.50 16 3 Si 1.11 49.65 30.00 68.60 2.06 51.70 16 4 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 7 C -0.35 -19.41 10.05 84.03 0.84 -18.57 16 8 H 0.06 3.25 7.96 -2.91 -0.02 3.23 16 9 N -0.62 -30.06 3.33 -691.51 -2.30 -32.36 16 10 C 0.13 5.30 6.98 86.73 0.61 5.90 16 11 C 0.16 5.18 3.14 46.18 0.14 5.32 16 12 H 0.11 3.43 7.69 -2.39 -0.02 3.41 16 13 N -0.69 -20.88 4.77 -440.20 -2.10 -22.98 16 14 C 0.60 19.22 7.81 86.66 0.68 19.90 16 15 O -0.57 -21.41 15.00 -4.04 -0.06 -21.47 16 16 C -0.28 -7.72 6.47 -18.74 -0.12 -7.84 16 17 C 0.03 0.56 11.85 67.61 0.80 1.36 16 18 O 0.10 2.25 11.06 76.95 0.85 3.11 16 19 N -0.37 -9.75 11.84 -44.78 -0.53 -10.28 16 20 C 0.07 1.99 5.78 45.15 0.26 2.26 16 21 C -0.03 -0.70 3.36 -10.82 -0.04 -0.73 16 22 C -0.11 -2.32 6.36 31.70 0.20 -2.12 16 23 C -0.12 -1.90 6.91 31.91 0.22 -1.68 16 24 C -0.12 -2.06 6.83 31.67 0.22 -1.84 16 25 C -0.11 -2.60 6.45 31.32 0.20 -2.40 16 26 C 0.10 3.10 4.23 32.07 0.14 3.23 16 27 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 28 O -0.56 -13.49 12.63 -148.98 -1.88 -15.37 16 29 C 0.12 5.16 4.93 86.94 0.43 5.59 16 30 H 0.26 14.99 5.83 -92.71 -0.54 14.45 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.01 0.52 8.04 -2.38 -0.02 0.50 16 33 H 0.41 11.05 7.38 -92.71 -0.68 10.37 16 34 H 0.26 2.95 7.68 -2.91 -0.02 2.93 16 35 H 0.09 2.80 6.33 -2.39 -0.02 2.79 16 36 H 0.06 1.38 7.72 -2.39 -0.02 1.37 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 41 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.05 1.28 7.67 -2.39 -0.02 1.26 16 44 H 0.40 6.51 9.12 -74.06 -0.68 5.84 16 45 H 0.02 0.91 6.84 -2.39 -0.02 0.89 16 46 H 0.03 1.56 7.73 -2.39 -0.02 1.54 16 Total: -1.00 -72.52 374.15 1.22 -71.30 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: -0.10 Total: 25.98 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 5.01 Total: 4.89 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -4.65 Total: -120.14 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -1.09 Total: -33.74 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.06 Total: 51.70 kcal Total: -72.52 1.22 -71.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083516373.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.332 kcal (2) G-P(sol) polarization free energy of solvation -72.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds