Wall clock time and date at job start Tue Mar 31 2020 18:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 120.00095 * 2 1 4 4 H 1.48496 * 109.47043 * 239.99855 * 3 2 1 5 5 H 1.48501 * 109.47129 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47089 * 119.99940 * 3 2 1 7 7 C 1.38814 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00390 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99983 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00440 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.51940 * 34.87124 * 10 9 7 12 12 C 1.53799 * 109.52588 * 155.00003 * 10 9 7 13 13 C 1.52445 * 109.40273 * 197.74016 * 12 10 9 14 14 C 1.53944 * 110.73292 * 246.27206 * 13 12 10 15 15 C 1.52874 * 109.73156 * 44.36396 * 14 13 12 16 16 C 1.53443 * 109.38607 * 72.89800 * 15 14 13 17 17 N 1.45337 * 108.41520 * 282.28143 * 16 15 14 18 18 C 1.34776 * 120.36568 * 136.65885 * 17 16 15 19 19 O 1.21595 * 119.99582 * 186.42304 * 18 17 16 20 20 C 1.47489 * 119.99877 * 6.41288 * 18 17 16 21 21 C 1.37816 * 126.76983 * 201.74367 * 20 18 17 22 22 O 1.33495 * 108.33846 * 180.25375 * 21 20 18 23 23 C 1.34891 * 109.89110 * 359.76280 * 22 21 20 24 24 C 1.46770 * 125.65271 * 179.97438 * 23 22 21 25 25 N 1.34770 * 120.00655 * 0.02562 * 24 23 22 26 26 O 1.21690 * 119.99776 * 180.02562 * 24 23 22 27 27 C 1.36059 * 108.68625 * 0.02562 * 23 22 21 28 28 C 1.46965 * 119.26697 * 316.92612 * 17 16 15 29 29 H 0.97008 * 120.00022 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99674 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.48629 * 77.76065 * 12 10 9 32 32 H 1.09006 * 109.48112 * 317.71965 * 12 10 9 33 33 H 1.09003 * 109.22419 * 125.94860 * 13 12 10 34 34 H 1.09003 * 109.18880 * 6.57266 * 13 12 10 35 35 H 1.09007 * 109.42923 * 284.28520 * 14 13 12 36 36 H 1.08993 * 109.43239 * 164.44608 * 14 13 12 37 37 H 1.08997 * 109.48712 * 312.92248 * 15 14 13 38 38 H 1.09000 * 109.50348 * 192.87923 * 15 14 13 39 39 H 1.09003 * 109.68106 * 162.55017 * 16 15 14 40 40 H 1.08998 * 109.67298 * 42.01068 * 16 15 14 41 41 H 1.07997 * 125.83019 * 0.04312 * 21 20 18 42 42 H 0.97006 * 119.99745 * 359.97438 * 25 24 23 43 43 H 0.96999 * 120.00706 * 180.02562 * 25 24 23 44 44 H 1.08004 * 126.68208 * 179.97438 * 27 23 22 45 45 H 1.08997 * 109.53282 * 231.25486 * 28 17 16 46 46 H 1.09002 * 109.53584 * 351.48172 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9701 -3.5508 0.5880 12 6 1.1772 -4.7588 0.6131 13 6 2.0522 -5.9396 1.0185 14 6 1.7312 -7.1760 0.1593 15 6 1.6059 -6.7663 -1.3082 16 6 2.9988 -6.4526 -1.8701 17 7 3.3947 -5.1334 -1.4062 18 6 4.6473 -4.9160 -0.9587 19 8 4.9387 -3.8441 -0.4641 20 6 5.6644 -5.9784 -1.0689 21 6 6.8183 -6.0961 -0.3245 22 8 7.4708 -7.1875 -0.7310 23 6 6.7793 -7.7951 -1.7169 24 6 7.1821 -9.0226 -2.4134 25 7 8.3330 -9.6398 -2.0803 26 8 6.4770 -9.4832 -3.2917 27 6 5.6470 -7.0807 -1.9595 28 6 2.4123 -4.0405 -1.4248 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 0.4417 -5.0867 -0.1214 32 1 0.6644 -4.3677 1.4919 33 1 1.8734 -6.1753 2.0676 34 1 3.1002 -5.6715 0.8844 35 1 0.7920 -7.6164 0.4943 36 1 2.5317 -7.9081 0.2642 37 1 0.9747 -5.8811 -1.3860 38 1 1.1597 -7.5821 -1.8769 39 1 2.9663 -6.4640 -2.9596 40 1 3.7133 -7.1958 -1.5161 41 1 7.1413 -5.4191 0.4524 42 1 8.8953 -9.2725 -1.3804 43 1 8.5994 -10.4509 -2.5408 44 1 4.8854 -7.3074 -2.6908 45 1 2.8389 -3.1757 -1.9329 46 1 1.5143 -4.3666 -1.9496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088351478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:34 Heat of formation + Delta-G solvation = -26.536875 kcal Electronic energy + Delta-G solvation = -30151.879957 eV Core-core repulsion = 26044.275498 eV Total energy + Delta-G solvation = -4107.604459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.15738 -40.20007 -39.55588 -37.41722 -35.19179 -34.29087 -33.94537 -33.26171 -31.99097 -30.31448 -29.62917 -27.60016 -26.32519 -24.36018 -24.11064 -23.20250 -22.13179 -21.50618 -20.41017 -19.83450 -19.41904 -17.87612 -17.47536 -17.01384 -16.85189 -16.66946 -16.31233 -15.81670 -15.67743 -14.81076 -14.79544 -14.46322 -14.37277 -14.07326 -13.75412 -13.62754 -13.44910 -12.97781 -12.91060 -12.77393 -12.58643 -12.10014 -11.69817 -11.44652 -11.04962 -10.93096 -10.87532 -10.75878 -10.67783 -10.45429 -10.28669 -10.24229 -10.20974 -10.06983 -9.93852 -9.53781 -9.41322 -9.08944 -8.93593 -8.21945 -6.88048 -5.68673 -2.96953 0.63050 1.44427 2.22259 2.70837 3.02351 3.16306 3.40158 3.52093 3.55035 3.58071 4.30561 4.42125 4.58432 4.66515 4.75679 4.99047 5.00821 5.07644 5.16816 5.31857 5.39368 5.43677 5.48364 5.64291 5.67169 5.76166 5.79869 5.85357 5.89972 6.00272 6.09249 6.14731 6.17455 6.21140 6.34723 6.41392 6.48490 6.54799 6.71204 6.75188 6.81576 6.92055 7.23921 7.65156 7.68482 7.87893 8.40798 8.51054 9.61900 10.17315 10.52718 11.53953 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016596 B = 0.003205 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.783663 B = 8732.995656 C = 9755.680181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.286 1.286 7 C -0.232 4.232 8 H 0.074 0.926 9 N -0.719 5.719 10 C 0.163 3.837 11 H 0.067 0.933 12 C -0.131 4.131 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.151 4.151 16 C 0.093 3.907 17 N -0.592 5.592 18 C 0.578 3.422 19 O -0.522 6.522 20 C -0.234 4.234 21 C 0.072 3.928 22 O -0.157 6.157 23 C -0.097 4.097 24 C 0.612 3.388 25 N -0.844 5.844 26 O -0.521 6.521 27 C -0.090 4.090 28 C 0.100 3.900 29 H 0.254 0.746 30 H 0.383 0.617 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.089 0.911 41 H 0.228 0.772 42 H 0.407 0.593 43 H 0.409 0.591 44 H 0.175 0.825 45 H 0.076 0.924 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.338 -22.640 -2.123 26.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.213 1.213 7 C -0.363 4.363 8 H 0.092 0.908 9 N -0.360 5.360 10 C 0.052 3.948 11 H 0.085 0.915 12 C -0.169 4.169 13 C -0.154 4.154 14 C -0.151 4.151 15 C -0.189 4.189 16 C -0.030 4.030 17 N -0.325 5.325 18 C 0.365 3.635 19 O -0.399 6.399 20 C -0.238 4.238 21 C -0.001 4.001 22 O -0.051 6.051 23 C -0.148 4.148 24 C 0.397 3.603 25 N -0.407 5.407 26 O -0.399 6.399 27 C -0.111 4.111 28 C -0.024 4.024 29 H 0.064 0.936 30 H 0.216 0.784 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.244 0.756 42 H 0.237 0.763 43 H 0.241 0.759 44 H 0.192 0.808 45 H 0.094 0.906 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.293 -22.183 -2.298 25.963 hybrid contribution 0.364 0.823 0.024 0.900 sum 13.657 -21.361 -2.273 25.455 Atomic orbital electron populations 1.69653 1.05060 1.25610 1.58257 1.24724 0.95476 0.97611 1.03255 0.86276 0.78479 0.83580 0.77949 1.21313 1.21862 1.21294 1.19313 0.91286 0.83876 1.41835 0.90788 1.42395 1.05655 0.99753 1.88189 1.20637 0.95365 0.85924 0.92874 0.91521 1.22100 0.98397 0.95326 1.01036 1.21655 1.00669 0.94671 0.98391 1.21707 1.01033 0.97573 0.94743 1.22342 0.97061 1.02970 0.96484 1.22092 0.97330 0.85144 0.98468 1.47722 1.10766 1.11086 1.62974 1.17154 0.81371 0.86046 0.78895 1.90879 1.80024 1.25444 1.43509 1.20874 0.99665 1.00222 1.03053 1.25081 0.90231 0.86632 0.98136 1.83915 1.44996 1.33302 1.42876 1.21777 0.96016 0.99616 0.97413 1.16502 0.81306 0.81026 0.81435 1.43677 1.23768 1.30833 1.42471 1.90950 1.53309 1.64677 1.30927 1.22386 0.96912 0.92465 0.99306 1.22580 0.90266 0.87713 1.01817 0.93626 0.78351 0.91904 0.91826 0.92931 0.92045 0.92234 0.92575 0.89130 0.91204 0.91903 0.89266 0.75627 0.76349 0.75890 0.80800 0.90604 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.64 13.06 55.49 0.72 -27.91 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 23.26 29.55 -169.99 -5.02 18.23 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.23 -6.64 9.89 -15.06 -0.15 -6.79 16 8 H 0.07 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.72 -18.26 5.12 -53.61 -0.27 -18.54 16 10 C 0.16 3.32 2.38 -68.12 -0.16 3.16 16 11 H 0.07 1.54 5.93 -51.92 -0.31 1.23 16 12 C -0.13 -2.18 4.97 -26.60 -0.13 -2.31 16 13 C -0.12 -1.62 5.40 -26.52 -0.14 -1.76 16 14 C -0.11 -1.26 5.75 -26.30 -0.15 -1.41 16 15 C -0.15 -1.65 5.45 -26.57 -0.14 -1.79 16 16 C 0.09 1.05 4.48 -4.44 -0.02 1.03 16 17 N -0.59 -8.81 1.69 -175.92 -0.30 -9.11 16 18 C 0.58 9.24 6.21 -12.49 -0.08 9.16 16 19 O -0.52 -10.53 15.50 5.28 0.08 -10.45 16 20 C -0.23 -2.86 5.69 -104.95 -0.60 -3.46 16 21 C 0.07 0.70 12.01 30.58 0.37 1.06 16 22 O -0.16 -1.35 10.33 6.17 0.06 -1.29 16 23 C -0.10 -0.95 7.09 -36.92 -0.26 -1.21 16 24 C 0.61 5.72 8.06 -12.82 -0.10 5.62 16 25 N -0.84 -4.30 8.87 30.28 0.27 -4.03 16 26 O -0.52 -6.61 17.68 5.20 0.09 -6.52 16 27 C -0.09 -0.97 8.18 -39.03 -0.32 -1.29 16 28 C 0.10 1.81 4.74 -4.40 -0.02 1.79 16 29 H 0.25 7.55 8.31 -40.82 -0.34 7.22 16 30 H 0.38 10.18 7.80 -40.82 -0.32 9.86 16 31 H 0.06 0.97 5.47 -51.93 -0.28 0.69 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.94 5.37 -51.93 -0.28 0.66 16 35 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 36 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 37 H 0.09 1.14 3.35 -51.93 -0.17 0.97 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.64 7.94 -51.93 -0.41 0.23 16 40 H 0.09 0.92 4.20 -51.93 -0.22 0.71 16 41 H 0.23 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.41 1.22 8.57 -40.82 -0.35 0.87 16 43 H 0.41 1.39 8.93 -40.82 -0.36 1.03 16 44 H 0.17 1.76 5.89 -52.48 -0.31 1.45 16 45 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 46 H 0.07 1.23 6.06 -51.93 -0.31 0.92 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -35.44 361.17 -6.75 -42.19 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -5.82 Total: 10.73 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -2.01 Total: 1.25 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 0.42 Total: -59.59 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.24 Total: -18.26 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.44 -6.75 -42.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088351478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.657 kcal (2) G-P(sol) polarization free energy of solvation -35.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds