Wall clock time and date at job start Tue Mar 31 2020 18:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86807 * 120.00095 * 2 1 4 4 H 1.48496 * 109.47043 * 239.99855 * 3 2 1 5 5 H 1.48501 * 109.47129 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47089 * 119.99940 * 3 2 1 7 7 C 1.38814 * 120.00161 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00390 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99983 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00440 * 179.97438 * 9 7 2 11 11 H 1.09008 * 109.51940 * 34.87124 * 10 9 7 12 12 C 1.53799 * 109.52588 * 155.00003 * 10 9 7 13 13 C 1.52445 * 109.40273 * 197.74016 * 12 10 9 14 14 C 1.53944 * 110.73292 * 246.27206 * 13 12 10 15 15 C 1.52874 * 109.73156 * 44.36396 * 14 13 12 16 16 C 1.53443 * 109.38607 * 72.89800 * 15 14 13 17 17 N 1.45337 * 108.41520 * 282.28143 * 16 15 14 18 18 C 1.34776 * 120.36568 * 136.65885 * 17 16 15 19 19 O 1.21595 * 119.99582 * 186.42304 * 18 17 16 20 20 C 1.47489 * 119.99877 * 6.41288 * 18 17 16 21 21 C 1.37816 * 126.76983 * 201.74367 * 20 18 17 22 22 O 1.33495 * 108.33846 * 180.25375 * 21 20 18 23 23 C 1.34891 * 109.89110 * 359.76280 * 22 21 20 24 24 C 1.46770 * 125.65271 * 179.97438 * 23 22 21 25 25 N 1.34770 * 120.00655 * 0.02562 * 24 23 22 26 26 O 1.21690 * 119.99776 * 180.02562 * 24 23 22 27 27 C 1.36059 * 108.68625 * 0.02562 * 23 22 21 28 28 C 1.46965 * 119.26697 * 316.92612 * 17 16 15 29 29 H 0.97008 * 120.00022 * 0.02562 * 1 2 3 30 30 H 0.97000 * 119.99674 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.48629 * 77.76065 * 12 10 9 32 32 H 1.09006 * 109.48112 * 317.71965 * 12 10 9 33 33 H 1.09003 * 109.22419 * 125.94860 * 13 12 10 34 34 H 1.09003 * 109.18880 * 6.57266 * 13 12 10 35 35 H 1.09007 * 109.42923 * 284.28520 * 14 13 12 36 36 H 1.08993 * 109.43239 * 164.44608 * 14 13 12 37 37 H 1.08997 * 109.48712 * 312.92248 * 15 14 13 38 38 H 1.09000 * 109.50348 * 192.87923 * 15 14 13 39 39 H 1.09003 * 109.68106 * 162.55017 * 16 15 14 40 40 H 1.08998 * 109.67298 * 42.01068 * 16 15 14 41 41 H 1.07997 * 125.83019 * 0.04312 * 21 20 18 42 42 H 0.97006 * 119.99745 * 359.97438 * 25 24 23 43 43 H 0.96999 * 120.00706 * 180.02562 * 25 24 23 44 44 H 1.08004 * 126.68208 * 179.97438 * 27 23 22 45 45 H 1.08997 * 109.53282 * 231.25486 * 28 17 16 46 46 H 1.09002 * 109.53584 * 351.48172 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9701 -3.5508 0.5880 12 6 1.1772 -4.7588 0.6131 13 6 2.0522 -5.9396 1.0185 14 6 1.7312 -7.1760 0.1593 15 6 1.6059 -6.7663 -1.3082 16 6 2.9988 -6.4526 -1.8701 17 7 3.3947 -5.1334 -1.4062 18 6 4.6473 -4.9160 -0.9587 19 8 4.9387 -3.8441 -0.4641 20 6 5.6644 -5.9784 -1.0689 21 6 6.8183 -6.0961 -0.3245 22 8 7.4708 -7.1875 -0.7310 23 6 6.7793 -7.7951 -1.7169 24 6 7.1821 -9.0226 -2.4134 25 7 8.3330 -9.6398 -2.0803 26 8 6.4770 -9.4832 -3.2917 27 6 5.6470 -7.0807 -1.9595 28 6 2.4123 -4.0405 -1.4248 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 0.4417 -5.0867 -0.1214 32 1 0.6644 -4.3677 1.4919 33 1 1.8734 -6.1753 2.0676 34 1 3.1002 -5.6715 0.8844 35 1 0.7920 -7.6164 0.4943 36 1 2.5317 -7.9081 0.2642 37 1 0.9747 -5.8811 -1.3860 38 1 1.1597 -7.5821 -1.8769 39 1 2.9663 -6.4640 -2.9596 40 1 3.7133 -7.1958 -1.5161 41 1 7.1413 -5.4191 0.4524 42 1 8.8953 -9.2725 -1.3804 43 1 8.5994 -10.4509 -2.5408 44 1 4.8854 -7.3074 -2.6908 45 1 2.8389 -3.1757 -1.9329 46 1 1.5143 -4.3666 -1.9496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088351478.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:34 Heat of formation + Delta-G solvation = -53.651957 kcal Electronic energy + Delta-G solvation = -30153.055755 eV Core-core repulsion = 26044.275498 eV Total energy + Delta-G solvation = -4108.780258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.97053 -41.44010 -40.29111 -38.72790 -36.77734 -35.33079 -34.89445 -34.28632 -33.72027 -31.31486 -31.11204 -29.03486 -27.53636 -25.95308 -24.94077 -24.64956 -23.20423 -22.65955 -21.64991 -20.91471 -20.28242 -19.14111 -18.80457 -18.26817 -17.67045 -17.48642 -17.33725 -17.14407 -16.92850 -16.28649 -15.80046 -15.57445 -15.43656 -15.32690 -15.15927 -15.12120 -14.51449 -14.27919 -14.15070 -14.06301 -13.78796 -13.45090 -13.10417 -12.98632 -12.79280 -12.53645 -12.24727 -12.05364 -11.98387 -11.76667 -11.69261 -11.45937 -11.41757 -11.36896 -11.17299 -11.02582 -10.85428 -10.69669 -9.92369 -9.60309 -8.92910 -7.94987 -5.22763 -0.13575 0.49503 1.43261 1.43784 1.46375 1.53074 1.93289 1.97892 2.20564 2.48249 2.56202 3.36966 3.44283 3.66317 3.72545 3.74621 3.95374 4.01384 4.07882 4.16565 4.22252 4.25419 4.32813 4.46057 4.52239 4.64422 4.73237 4.74243 4.79159 4.84744 4.91381 4.94537 5.03544 5.14370 5.25406 5.31674 5.41419 5.43675 5.47884 5.53756 5.55911 5.73158 5.77002 6.26849 6.28473 6.48890 7.10065 7.17417 7.34552 8.08407 8.34363 9.27687 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016596 B = 0.003205 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.783663 B = 8732.995656 C = 9755.680181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.966 5.966 2 C -0.071 4.071 3 Si 0.966 3.034 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.233 4.233 8 H 0.060 0.940 9 N -0.730 5.730 10 C 0.164 3.836 11 H 0.036 0.964 12 C -0.120 4.120 13 C -0.111 4.111 14 C -0.107 4.107 15 C -0.149 4.149 16 C 0.088 3.912 17 N -0.588 5.588 18 C 0.575 3.425 19 O -0.577 6.577 20 C -0.259 4.259 21 C 0.094 3.906 22 O -0.140 6.140 23 C -0.092 4.092 24 C 0.613 3.387 25 N -0.820 5.820 26 O -0.558 6.558 27 C -0.094 4.094 28 C 0.116 3.884 29 H 0.252 0.748 30 H 0.375 0.625 31 H 0.080 0.920 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.249 0.751 42 H 0.420 0.580 43 H 0.421 0.579 44 H 0.180 0.820 45 H 0.033 0.967 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.659 -25.440 -2.383 29.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.263 4.263 3 Si 0.795 3.205 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.078 0.922 9 N -0.371 5.371 10 C 0.055 3.945 11 H 0.054 0.946 12 C -0.158 4.158 13 C -0.150 4.150 14 C -0.144 4.144 15 C -0.186 4.186 16 C -0.034 4.034 17 N -0.319 5.319 18 C 0.365 3.635 19 O -0.458 6.458 20 C -0.263 4.263 21 C 0.020 3.980 22 O -0.033 6.033 23 C -0.144 4.144 24 C 0.397 3.603 25 N -0.384 5.384 26 O -0.439 6.439 27 C -0.115 4.115 28 C -0.009 4.009 29 H 0.061 0.939 30 H 0.208 0.792 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.123 0.877 41 H 0.264 0.736 42 H 0.252 0.748 43 H 0.254 0.746 44 H 0.198 0.802 45 H 0.052 0.948 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.679 -25.078 -2.556 29.171 hybrid contribution 0.070 1.590 0.134 1.597 sum 14.749 -23.489 -2.422 27.841 Atomic orbital electron populations 1.69783 1.06180 1.26030 1.59675 1.25437 0.96383 1.00585 1.03898 0.85324 0.77350 0.79827 0.77966 1.20918 1.21448 1.20828 1.19434 0.90822 0.85473 1.40805 0.92202 1.42508 1.05350 1.00724 1.88482 1.20720 0.94384 0.85270 0.94101 0.94600 1.21991 0.98404 0.95046 1.00369 1.21597 0.98887 0.94833 0.99633 1.21691 1.02439 0.96155 0.94103 1.22337 0.96251 1.03228 0.96822 1.22405 0.98173 0.83204 0.99572 1.47665 1.09984 1.11658 1.62628 1.17683 0.82059 0.86155 0.77638 1.90846 1.80991 1.27852 1.46085 1.20547 0.99999 1.00321 1.05431 1.25468 0.88948 0.86306 0.97272 1.83956 1.44264 1.32710 1.42335 1.21845 0.95633 0.99659 0.97241 1.16462 0.81977 0.80854 0.81023 1.43522 1.22287 1.30542 1.42024 1.90939 1.54730 1.65606 1.32606 1.22396 0.97738 0.92064 0.99259 1.22015 0.91437 0.87816 0.99594 0.93950 0.79236 0.90200 0.93674 0.92199 0.93681 0.90689 0.90880 0.90964 0.88109 0.90218 0.87660 0.73561 0.74823 0.74564 0.80249 0.94820 0.88808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.51 13.06 21.65 0.28 -60.23 16 2 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 3 Si 0.97 48.98 29.55 68.60 2.03 51.01 16 4 H -0.28 -14.04 7.11 99.48 0.71 -13.34 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.65 16 6 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.23 -13.94 9.89 84.03 0.83 -13.11 16 8 H 0.06 3.69 7.83 -2.91 -0.02 3.66 16 9 N -0.73 -38.82 5.12 -323.52 -1.66 -40.48 16 10 C 0.16 7.01 2.38 44.87 0.11 7.11 16 11 H 0.04 1.76 5.93 -2.38 -0.01 1.75 16 12 C -0.12 -4.05 4.97 30.68 0.15 -3.89 16 13 C -0.11 -3.00 5.40 30.73 0.17 -2.83 16 14 C -0.11 -2.05 5.75 30.87 0.18 -1.87 16 15 C -0.15 -2.82 5.45 30.70 0.17 -2.65 16 16 C 0.09 1.81 4.48 86.75 0.39 2.20 16 17 N -0.59 -17.51 1.69 -828.76 -1.40 -18.92 16 18 C 0.57 18.71 6.21 86.68 0.54 19.25 16 19 O -0.58 -24.51 15.50 -4.01 -0.06 -24.58 16 20 C -0.26 -6.06 5.69 -20.08 -0.11 -6.17 16 21 C 0.09 1.63 12.01 67.72 0.81 2.45 16 22 O -0.14 -2.02 10.33 -0.82 -0.01 -2.02 16 23 C -0.09 -1.57 7.09 23.99 0.17 -1.40 16 24 C 0.61 9.88 8.06 86.47 0.70 10.58 16 25 N -0.82 -5.84 8.87 -176.33 -1.56 -7.40 16 26 O -0.56 -13.09 17.68 -4.32 -0.08 -13.17 16 27 C -0.09 -1.85 8.18 22.62 0.19 -1.67 16 28 C 0.12 4.36 4.74 85.90 0.41 4.77 16 29 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16 30 H 0.38 20.79 7.80 -92.71 -0.72 20.06 16 31 H 0.08 2.41 5.47 -2.39 -0.01 2.40 16 32 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.04 1.37 5.37 -2.39 -0.01 1.36 16 35 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.07 1.22 7.87 -2.39 -0.02 1.20 16 37 H 0.07 1.66 3.35 -2.39 -0.01 1.66 16 38 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.42 7.94 -2.39 -0.02 1.40 16 40 H 0.11 1.90 4.20 -2.39 -0.01 1.89 16 41 H 0.25 3.16 8.06 -2.91 -0.02 3.13 16 42 H 0.42 1.06 8.57 -92.70 -0.79 0.27 16 43 H 0.42 1.60 8.93 -92.71 -0.83 0.77 16 44 H 0.18 3.26 5.89 -2.91 -0.02 3.24 16 45 H 0.03 1.54 8.10 -2.39 -0.02 1.52 16 46 H 0.09 3.13 6.06 -2.39 -0.01 3.11 16 Total: -1.00 -80.82 361.17 1.42 -79.40 By element: Atomic # 1 Polarization: 28.69 SS G_CDS: -1.27 Total: 27.43 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 5.15 Total: 8.97 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -4.34 Total: -127.03 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.15 Total: -39.77 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.03 Total: 51.01 kcal Total: -80.82 1.42 -79.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088351478.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.743 kcal (2) G-P(sol) polarization free energy of solvation -80.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds