Wall clock time and date at job start Tue Mar 31 2020 18:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99894 * 2 1 4 4 H 1.48492 * 109.47158 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46679 * 300.00007 * 3 2 1 6 6 H 1.48501 * 109.47167 * 59.99806 * 3 2 1 7 7 C 1.38811 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99905 * 197.37404 * 7 2 1 9 9 N 1.36929 * 120.00261 * 17.38519 * 7 2 1 10 10 C 1.46928 * 120.63074 * 207.67902 * 9 7 2 11 11 C 1.53196 * 108.77409 * 233.58461 * 10 9 7 12 12 C 1.53042 * 109.31094 * 305.35973 * 11 10 9 13 13 H 1.09001 * 109.45066 * 301.35566 * 12 11 10 14 14 N 1.46501 * 109.46190 * 181.38465 * 12 11 10 15 15 C 1.34778 * 119.99597 * 84.93213 * 14 12 11 16 16 O 1.21695 * 120.00374 * 0.02562 * 15 14 12 17 17 C 1.46674 * 119.99900 * 180.02562 * 15 14 12 18 18 C 1.38157 * 126.19066 * 179.69692 * 17 15 14 19 19 C 1.38942 * 106.94845 * 179.84607 * 18 17 15 20 20 C 1.36279 * 108.02465 * 0.45858 * 19 18 17 21 21 N 1.34746 * 108.83371 * 359.66690 * 20 19 18 22 22 H 0.96997 * 125.71204 * 180.02562 * 21 20 19 23 23 C 1.51084 * 122.58286 * 179.57186 * 20 19 18 24 24 C 1.53548 * 107.71992 * 344.13264 * 23 20 19 25 25 O 1.42992 * 109.68435 * 48.02045 * 24 23 20 26 26 C 1.43420 * 114.34115 * 288.96464 * 25 24 23 27 27 C 1.53043 * 109.53677 * 61.36738 * 12 11 10 28 28 H 1.08997 * 109.49936 * 58.61688 * 27 12 11 29 29 O 1.42897 * 109.49640 * 178.68103 * 27 12 11 30 30 C 1.46929 * 120.63402 * 27.64766 * 9 7 2 31 31 H 0.96995 * 120.00276 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.58932 * 113.79490 * 10 9 7 33 33 H 1.08995 * 109.58617 * 353.36760 * 10 9 7 34 34 H 1.09003 * 109.49666 * 185.41219 * 11 10 9 35 35 H 1.08997 * 109.49993 * 65.31303 * 11 10 9 36 36 H 0.96994 * 119.99966 * 264.93866 * 14 12 11 37 37 H 1.07997 * 126.52566 * 359.97438 * 18 17 15 38 38 H 1.09002 * 109.80747 * 103.69971 * 23 20 19 39 39 H 1.08996 * 109.81192 * 224.58410 * 23 20 19 40 40 H 1.09001 * 109.43224 * 287.95681 * 24 23 20 41 41 H 1.08998 * 109.39409 * 168.06769 * 24 23 20 42 42 H 1.09003 * 109.76055 * 291.12120 * 26 25 24 43 43 H 1.08997 * 109.76703 * 170.34409 * 26 25 24 44 44 H 0.96706 * 114.00132 * 179.97438 * 29 27 12 45 45 H 1.09007 * 109.58241 * 6.63445 * 30 9 7 46 46 H 1.08997 * 109.58976 * 246.20953 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2798 9 7 1.3726 -2.3611 -0.3533 10 6 1.8194 -3.6546 0.1813 11 6 2.0746 -4.6101 -0.9887 12 6 0.8189 -4.6900 -1.8599 13 1 -0.0201 -5.0363 -1.2564 14 7 1.0480 -5.6283 -2.9615 15 6 0.8477 -6.9480 -2.7751 16 8 0.4760 -7.3602 -1.6921 17 6 1.0776 -7.8875 -3.8778 18 6 0.9188 -9.2590 -3.8275 19 6 1.2387 -9.7503 -5.0871 20 6 1.5923 -8.6952 -5.8739 21 7 1.4970 -7.5622 -5.1508 22 1 1.6916 -6.6678 -5.4716 23 6 2.0133 -8.8604 -7.3155 24 6 2.3413 -10.3436 -7.5395 25 8 1.2906 -11.1549 -7.0080 26 6 1.2282 -11.1773 -5.5754 27 6 0.5010 -3.3049 -2.4279 28 1 1.3494 -2.9475 -3.0114 29 8 -0.6537 -3.3865 -3.2658 30 6 0.2280 -2.3347 -1.2742 31 1 -0.4850 0.8400 0.0004 32 1 1.0470 -4.0687 0.8295 33 1 2.7401 -3.5173 0.7483 34 1 2.3138 -5.6013 -0.6035 35 1 2.9084 -4.2401 -1.5853 36 1 1.3440 -5.2998 -3.8247 37 1 0.6037 -9.8387 -2.9724 38 1 1.1997 -8.5581 -7.9748 39 1 2.8961 -8.2528 -7.5145 40 1 3.2775 -10.5879 -7.0375 41 1 2.4421 -10.5346 -8.6079 42 1 2.0921 -11.7095 -5.1772 43 1 0.3106 -11.6701 -5.2541 44 1 -0.9137 -2.5429 -3.6605 45 1 0.0987 -1.3264 -1.6675 46 1 -0.6742 -2.6411 -0.7447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090316134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:15 Heat of formation + Delta-G solvation = -64.275102 kcal Electronic energy + Delta-G solvation = -29115.118904 eV Core-core repulsion = 25005.877992 eV Total energy + Delta-G solvation = -4109.240912 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.87311 -39.61209 -38.33813 -37.67685 -35.33926 -34.45881 -32.76102 -32.40414 -31.64278 -29.77426 -29.08837 -28.81741 -26.01471 -24.89933 -23.95492 -22.69788 -22.13681 -21.46461 -20.18969 -19.66988 -19.25799 -18.44415 -17.02998 -16.68000 -16.61014 -16.16476 -15.99100 -15.61779 -15.01687 -14.93511 -14.65864 -14.24688 -14.03462 -13.86323 -13.80901 -13.61467 -13.40338 -13.23109 -12.87957 -12.63683 -12.42163 -12.25438 -12.01948 -11.73716 -11.72338 -11.29745 -11.23768 -10.89815 -10.83100 -10.47227 -10.24741 -10.16357 -10.11384 -10.02824 -9.62540 -9.43625 -9.06796 -8.88216 -8.59766 -8.16316 -6.83679 -5.91939 -3.35404 1.33997 2.36724 2.73331 3.23453 3.28797 3.37061 3.39049 3.43120 3.52487 4.26594 4.36143 4.48175 4.50740 4.72023 4.77699 4.86755 4.96013 5.13789 5.18654 5.24271 5.25549 5.32224 5.39447 5.44512 5.52218 5.55678 5.75860 5.84177 5.91829 5.94181 6.01841 6.13637 6.37714 6.39626 6.48753 6.63724 6.66224 6.75955 6.82820 6.86051 7.06064 7.11036 7.39706 7.62587 7.68420 8.01717 8.29306 8.31521 9.06210 9.69026 10.25147 11.16585 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026891 B = 0.002300 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.005635 B =12171.974904 C =12482.838401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.139 4.139 12 C 0.163 3.837 13 H 0.091 0.909 14 N -0.715 5.715 15 C 0.587 3.413 16 O -0.530 6.530 17 C -0.047 4.047 18 C -0.091 4.091 19 C -0.222 4.222 20 C 0.050 3.950 21 N -0.523 5.523 22 H 0.416 0.584 23 C -0.087 4.087 24 C 0.069 3.931 25 O -0.381 6.381 26 C 0.137 3.863 27 C 0.072 3.928 28 H 0.050 0.950 29 O -0.573 6.573 30 C 0.148 3.852 31 H 0.255 0.745 32 H 0.025 0.975 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.389 0.611 37 H 0.151 0.849 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.062 0.938 43 H 0.103 0.897 44 H 0.376 0.624 45 H 0.095 0.905 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.836 -17.031 -16.226 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.180 4.180 12 C 0.060 3.940 13 H 0.109 0.891 14 N -0.364 5.364 15 C 0.374 3.626 16 O -0.407 6.407 17 C -0.160 4.160 18 C -0.117 4.117 19 C -0.228 4.228 20 C -0.069 4.069 21 N -0.118 5.118 22 H 0.254 0.746 23 C -0.125 4.125 24 C -0.008 4.008 25 O -0.299 6.299 26 C 0.060 3.940 27 C 0.011 3.989 28 H 0.068 0.932 29 O -0.378 6.378 30 C 0.021 3.979 31 H 0.065 0.935 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.222 0.778 37 H 0.168 0.832 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.080 0.920 43 H 0.121 0.879 44 H 0.223 0.777 45 H 0.113 0.887 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 4.379 -17.714 -15.344 23.842 hybrid contribution 0.755 2.479 -0.522 2.644 sum 5.134 -15.235 -15.866 22.587 Atomic orbital electron populations 1.70038 1.05267 1.25634 1.53626 1.25088 0.95328 0.98584 1.00682 0.86207 0.79379 0.83730 0.77372 1.20188 1.21533 1.21568 1.19246 0.92889 0.84594 1.41742 0.91284 1.44027 1.35638 1.01828 1.49829 1.20949 0.98342 0.86267 0.92669 1.22426 0.96495 1.00389 0.98651 1.21040 0.98868 0.86880 0.87245 0.89118 1.46004 1.68786 1.06227 1.15378 1.16997 0.77663 0.81538 0.86444 1.90844 1.47016 1.77775 1.25025 1.20650 1.14874 0.95212 0.85271 1.20811 1.02123 0.91474 0.97275 1.19912 1.11940 0.96013 0.94979 1.20215 1.06101 0.85746 0.94861 1.41634 1.51642 1.08665 1.09852 0.74649 1.21021 1.02310 0.99272 0.89918 1.22533 0.90442 0.88074 0.99779 1.88017 1.53036 1.68202 1.20633 1.21051 1.02271 0.91067 0.79579 1.22989 0.86990 0.95434 0.93487 0.93156 1.86420 1.48336 1.36632 1.66405 1.21422 0.89885 0.98204 0.88387 0.93494 0.95691 0.92011 0.91657 0.92097 0.77818 0.83175 0.89270 0.89583 0.92493 0.88052 0.92009 0.87896 0.77702 0.88743 0.95121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.25 11.19 55.49 0.62 -24.63 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 20.86 29.59 -169.99 -5.03 15.83 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.26 -6.73 9.59 -15.06 -0.14 -6.87 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -14.22 2.99 -172.31 -0.52 -14.73 16 10 C 0.14 3.01 6.52 -3.71 -0.02 2.99 16 11 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 12 C 0.16 2.92 2.12 -67.89 -0.14 2.77 16 13 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 14 N -0.72 -10.69 4.91 -55.07 -0.27 -10.96 16 15 C 0.59 9.46 7.75 -12.85 -0.10 9.36 16 16 O -0.53 -10.46 16.54 5.19 0.09 -10.37 16 17 C -0.05 -0.63 7.06 -81.75 -0.58 -1.21 16 18 C -0.09 -1.16 10.63 -39.35 -0.42 -1.58 16 19 C -0.22 -2.42 6.02 -105.00 -0.63 -3.05 16 20 C 0.05 0.49 7.14 -81.83 -0.58 -0.10 16 21 N -0.52 -5.27 5.97 -5.43 -0.03 -5.30 16 22 H 0.42 3.10 8.19 -40.82 -0.33 2.77 16 23 C -0.09 -0.56 6.56 -27.41 -0.18 -0.74 16 24 C 0.07 0.44 6.78 37.44 0.25 0.70 16 25 O -0.38 -3.52 10.74 -35.23 -0.38 -3.90 16 26 C 0.14 1.21 7.25 36.07 0.26 1.47 16 27 C 0.07 1.31 3.14 -26.61 -0.08 1.22 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 O -0.57 -9.57 13.16 -35.23 -0.46 -10.03 16 30 C 0.15 3.37 4.94 -3.71 -0.02 3.35 16 31 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.39 4.74 7.73 -40.82 -0.32 4.42 16 37 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.38 4.99 9.08 45.56 0.41 5.41 16 45 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 46 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -33.36 372.80 -8.97 -42.32 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -5.97 Total: 10.50 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -2.63 Total: 5.65 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.20 Total: -55.62 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.76 Total: -24.31 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.36 -8.97 -42.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090316134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.951 kcal (2) G-P(sol) polarization free energy of solvation -33.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds