Wall clock time and date at job start Tue Mar 31 2020 18:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 119.99894 * 2 1 4 4 H 1.48492 * 109.47158 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46679 * 300.00007 * 3 2 1 6 6 H 1.48501 * 109.47167 * 59.99806 * 3 2 1 7 7 C 1.38811 * 119.99867 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99905 * 197.37404 * 7 2 1 9 9 N 1.36929 * 120.00261 * 17.38519 * 7 2 1 10 10 C 1.46928 * 120.63074 * 207.67902 * 9 7 2 11 11 C 1.53196 * 108.77409 * 233.58461 * 10 9 7 12 12 C 1.53042 * 109.31094 * 305.35973 * 11 10 9 13 13 H 1.09001 * 109.45066 * 301.35566 * 12 11 10 14 14 N 1.46501 * 109.46190 * 181.38465 * 12 11 10 15 15 C 1.34778 * 119.99597 * 84.93213 * 14 12 11 16 16 O 1.21695 * 120.00374 * 0.02562 * 15 14 12 17 17 C 1.46674 * 119.99900 * 180.02562 * 15 14 12 18 18 C 1.38157 * 126.19066 * 179.69692 * 17 15 14 19 19 C 1.38942 * 106.94845 * 179.84607 * 18 17 15 20 20 C 1.36279 * 108.02465 * 0.45858 * 19 18 17 21 21 N 1.34746 * 108.83371 * 359.66690 * 20 19 18 22 22 H 0.96997 * 125.71204 * 180.02562 * 21 20 19 23 23 C 1.51084 * 122.58286 * 179.57186 * 20 19 18 24 24 C 1.53548 * 107.71992 * 344.13264 * 23 20 19 25 25 O 1.42992 * 109.68435 * 48.02045 * 24 23 20 26 26 C 1.43420 * 114.34115 * 288.96464 * 25 24 23 27 27 C 1.53043 * 109.53677 * 61.36738 * 12 11 10 28 28 H 1.08997 * 109.49936 * 58.61688 * 27 12 11 29 29 O 1.42897 * 109.49640 * 178.68103 * 27 12 11 30 30 C 1.46929 * 120.63402 * 27.64766 * 9 7 2 31 31 H 0.96995 * 120.00276 * 359.97438 * 1 2 3 32 32 H 1.09004 * 109.58932 * 113.79490 * 10 9 7 33 33 H 1.08995 * 109.58617 * 353.36760 * 10 9 7 34 34 H 1.09003 * 109.49666 * 185.41219 * 11 10 9 35 35 H 1.08997 * 109.49993 * 65.31303 * 11 10 9 36 36 H 0.96994 * 119.99966 * 264.93866 * 14 12 11 37 37 H 1.07997 * 126.52566 * 359.97438 * 18 17 15 38 38 H 1.09002 * 109.80747 * 103.69971 * 23 20 19 39 39 H 1.08996 * 109.81192 * 224.58410 * 23 20 19 40 40 H 1.09001 * 109.43224 * 287.95681 * 24 23 20 41 41 H 1.08998 * 109.39409 * 168.06769 * 24 23 20 42 42 H 1.09003 * 109.76055 * 291.12120 * 26 25 24 43 43 H 1.08997 * 109.76703 * 170.34409 * 26 25 24 44 44 H 0.96706 * 114.00132 * 179.97438 * 29 27 12 45 45 H 1.09007 * 109.58241 * 6.63445 * 30 9 7 46 46 H 1.08997 * 109.58976 * 246.20953 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2798 9 7 1.3726 -2.3611 -0.3533 10 6 1.8194 -3.6546 0.1813 11 6 2.0746 -4.6101 -0.9887 12 6 0.8189 -4.6900 -1.8599 13 1 -0.0201 -5.0363 -1.2564 14 7 1.0480 -5.6283 -2.9615 15 6 0.8477 -6.9480 -2.7751 16 8 0.4760 -7.3602 -1.6921 17 6 1.0776 -7.8875 -3.8778 18 6 0.9188 -9.2590 -3.8275 19 6 1.2387 -9.7503 -5.0871 20 6 1.5923 -8.6952 -5.8739 21 7 1.4970 -7.5622 -5.1508 22 1 1.6916 -6.6678 -5.4716 23 6 2.0133 -8.8604 -7.3155 24 6 2.3413 -10.3436 -7.5395 25 8 1.2906 -11.1549 -7.0080 26 6 1.2282 -11.1773 -5.5754 27 6 0.5010 -3.3049 -2.4279 28 1 1.3494 -2.9475 -3.0114 29 8 -0.6537 -3.3865 -3.2658 30 6 0.2280 -2.3347 -1.2742 31 1 -0.4850 0.8400 0.0004 32 1 1.0470 -4.0687 0.8295 33 1 2.7401 -3.5173 0.7483 34 1 2.3138 -5.6013 -0.6035 35 1 2.9084 -4.2401 -1.5853 36 1 1.3440 -5.2998 -3.8247 37 1 0.6037 -9.8387 -2.9724 38 1 1.1997 -8.5581 -7.9748 39 1 2.8961 -8.2528 -7.5145 40 1 3.2775 -10.5879 -7.0375 41 1 2.4421 -10.5346 -8.6079 42 1 2.0921 -11.7095 -5.1772 43 1 0.3106 -11.6701 -5.2541 44 1 -0.9137 -2.5429 -3.6605 45 1 0.0987 -1.3264 -1.6675 46 1 -0.6742 -2.6411 -0.7447 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090316134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:14 Heat of formation + Delta-G solvation = -90.692139 kcal Electronic energy + Delta-G solvation = -29116.264433 eV Core-core repulsion = 25005.877992 eV Total energy + Delta-G solvation = -4110.386440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.73181 -40.93000 -39.43604 -38.76559 -36.94453 -35.93886 -34.07712 -33.42080 -32.59557 -31.33122 -30.59588 -29.88144 -27.40372 -26.15489 -24.77014 -24.11557 -23.57144 -22.71848 -21.45391 -21.06729 -20.03874 -19.60902 -18.75853 -18.16788 -17.45607 -17.33569 -16.90447 -16.70241 -16.49537 -16.01076 -15.78999 -15.60609 -15.28172 -15.22072 -14.96356 -14.91741 -14.58198 -14.36782 -14.05392 -13.90382 -13.60421 -13.48932 -13.39723 -13.09056 -13.02365 -12.71158 -12.56642 -12.37742 -12.14406 -12.02503 -11.91645 -11.75909 -11.53759 -11.19759 -10.98690 -10.76233 -10.64339 -10.23561 -9.90276 -9.03043 -8.80113 -7.93439 -5.40598 0.34360 1.45809 1.48816 1.51365 1.59175 1.87994 2.04387 2.27787 2.47491 2.97234 3.05576 3.23900 3.58213 3.65352 3.75026 3.87098 3.97975 3.99686 4.04697 4.19615 4.25783 4.35983 4.36348 4.40251 4.55612 4.62428 4.65542 4.77192 4.82110 4.82385 4.87732 4.96109 5.00373 5.01421 5.10869 5.11867 5.28078 5.33654 5.52373 5.61666 5.65599 5.76301 6.23836 6.30314 6.33794 6.50092 6.76937 7.06952 7.08077 7.74288 8.27487 9.13617 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026891 B = 0.002300 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.005635 B =12171.974904 C =12482.838401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.296 1.296 7 C -0.264 4.264 8 H 0.073 0.927 9 N -0.604 5.604 10 C 0.141 3.859 11 C -0.123 4.123 12 C 0.171 3.829 13 H 0.057 0.943 14 N -0.702 5.702 15 C 0.587 3.413 16 O -0.576 6.576 17 C -0.075 4.075 18 C -0.099 4.099 19 C -0.239 4.239 20 C 0.065 3.935 21 N -0.510 5.510 22 H 0.429 0.571 23 C -0.085 4.085 24 C 0.061 3.939 25 O -0.398 6.398 26 C 0.138 3.862 27 C 0.093 3.907 28 H 0.069 0.931 29 O -0.574 6.574 30 C 0.156 3.844 31 H 0.252 0.748 32 H 0.009 0.991 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.406 0.594 37 H 0.144 0.856 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.063 0.937 41 H 0.126 0.874 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.393 0.607 45 H 0.073 0.927 46 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.853 -17.486 -19.217 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.223 1.223 7 C -0.394 4.394 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.015 3.985 11 C -0.163 4.163 12 C 0.066 3.934 13 H 0.075 0.925 14 N -0.352 5.352 15 C 0.376 3.624 16 O -0.456 6.456 17 C -0.188 4.188 18 C -0.126 4.126 19 C -0.245 4.245 20 C -0.056 4.056 21 N -0.106 5.106 22 H 0.269 0.731 23 C -0.123 4.123 24 C -0.015 4.015 25 O -0.316 6.316 26 C 0.061 3.939 27 C 0.032 3.968 28 H 0.087 0.913 29 O -0.381 6.381 30 C 0.029 3.971 31 H 0.061 0.939 32 H 0.027 0.973 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.242 0.758 37 H 0.162 0.838 38 H 0.117 0.883 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.144 0.856 42 H 0.092 0.908 43 H 0.124 0.876 44 H 0.242 0.758 45 H 0.091 0.909 46 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 6.421 -18.157 -18.386 26.626 hybrid contribution 0.098 2.534 0.372 2.563 sum 6.519 -15.624 -18.014 24.720 Atomic orbital electron populations 1.70194 1.06743 1.26074 1.55095 1.25849 0.96032 1.01659 1.00895 0.85170 0.78677 0.79548 0.76795 1.18910 1.21294 1.22290 1.19580 0.93223 0.85501 1.41099 0.90891 1.44272 1.35659 1.02396 1.50558 1.21044 0.97965 0.85637 0.93836 1.22211 0.96823 0.99692 0.97543 1.20708 0.97741 0.87174 0.87800 0.92495 1.45701 1.68558 1.05564 1.15334 1.17326 0.76633 0.81820 0.86580 1.90815 1.49199 1.78499 1.27071 1.20161 1.17916 0.94698 0.85996 1.20971 1.01906 0.91590 0.98129 1.20203 1.12283 0.97607 0.94386 1.20865 1.03508 0.85044 0.96136 1.41559 1.50825 1.09615 1.08635 0.73089 1.21215 1.03784 0.99916 0.87340 1.22811 0.89938 0.87561 1.01232 1.88000 1.54231 1.68921 1.20478 1.21100 1.03085 0.89956 0.79759 1.22554 0.87980 0.94253 0.91990 0.91334 1.86401 1.47844 1.38023 1.65854 1.21231 0.88367 0.98139 0.89336 0.93886 0.97295 0.91309 0.91137 0.90545 0.75832 0.83809 0.88287 0.86789 0.91826 0.85587 0.90805 0.87584 0.75773 0.90881 0.98723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.61 11.19 21.65 0.24 -53.37 16 2 C -0.05 -2.62 4.91 84.86 0.42 -2.20 16 3 Si 0.97 42.91 29.59 68.60 2.03 44.94 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.30 -13.32 7.11 99.48 0.71 -12.62 16 7 C -0.26 -13.94 9.59 84.03 0.81 -13.14 16 8 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 9 N -0.60 -29.55 2.99 -699.08 -2.09 -31.65 16 10 C 0.14 5.96 6.52 86.36 0.56 6.52 16 11 C -0.12 -4.31 5.65 30.67 0.17 -4.13 16 12 C 0.17 6.09 2.12 45.02 0.10 6.18 16 13 H 0.06 2.45 7.58 -2.39 -0.02 2.43 16 14 N -0.70 -20.30 4.91 -446.36 -2.19 -22.49 16 15 C 0.59 18.92 7.75 86.45 0.67 19.59 16 16 O -0.58 -23.46 16.54 -4.33 -0.07 -23.53 16 17 C -0.08 -1.95 7.06 40.37 0.29 -1.66 16 18 C -0.10 -2.50 10.63 22.42 0.24 -2.26 16 19 C -0.24 -4.83 6.02 -20.11 -0.12 -4.95 16 20 C 0.07 1.10 7.14 41.78 0.30 1.40 16 21 N -0.51 -9.09 5.97 -171.10 -1.02 -10.11 16 22 H 0.43 5.08 8.19 -92.71 -0.76 4.32 16 23 C -0.08 -0.76 6.56 30.15 0.20 -0.56 16 24 C 0.06 0.57 6.78 72.17 0.49 1.06 16 25 O -0.40 -6.37 10.74 -148.98 -1.60 -7.97 16 26 C 0.14 2.20 7.25 71.28 0.52 2.72 16 27 C 0.09 3.34 3.14 30.67 0.10 3.44 16 28 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 29 O -0.57 -18.61 13.16 -148.98 -1.96 -20.57 16 30 C 0.16 7.29 4.94 86.36 0.43 7.71 16 31 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 32 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.07 2.76 7.93 -2.39 -0.02 2.74 16 34 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.41 8.97 7.73 -92.71 -0.72 8.26 16 37 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 40 H 0.06 0.51 8.09 -2.39 -0.02 0.50 16 41 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.39 9.93 9.08 -74.05 -0.67 9.26 16 45 H 0.07 3.71 6.04 -2.38 -0.01 3.70 16 46 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 Total: -1.00 -74.03 372.80 -2.63 -76.66 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: -1.11 Total: 28.39 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 5.15 Total: 19.71 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -5.07 Total: -117.62 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -3.63 Total: -52.08 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -74.03 -2.63 -76.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090316134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.030 kcal (2) G-P(sol) polarization free energy of solvation -74.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds