Wall clock time and date at job start Tue Mar 31 2020 18:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47183 * 270.00415 * 3 2 1 5 5 H 1.48500 * 109.46837 * 30.00616 * 3 2 1 6 6 H 1.48500 * 109.47014 * 149.99991 * 3 2 1 7 7 C 1.38817 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99755 * 163.07783 * 7 2 1 9 9 N 1.36934 * 119.99852 * 343.08533 * 7 2 1 10 10 C 1.46926 * 120.63321 * 151.82978 * 9 7 2 11 11 C 1.53196 * 108.77289 * 126.36530 * 10 9 7 12 12 C 1.53038 * 109.31215 * 54.63904 * 11 10 9 13 13 H 1.09003 * 109.46179 * 58.64405 * 12 11 10 14 14 N 1.46507 * 109.45623 * 178.61190 * 12 11 10 15 15 C 1.34777 * 119.99712 * 275.02510 * 14 12 11 16 16 O 1.21694 * 120.00448 * 359.97438 * 15 14 12 17 17 C 1.46677 * 119.99861 * 180.02562 * 15 14 12 18 18 C 1.38152 * 126.19397 * 179.97438 * 17 15 14 19 19 C 1.38942 * 106.95377 * 180.02562 * 18 17 15 20 20 C 1.36270 * 108.02156 * 359.81551 * 19 18 17 21 21 N 1.34745 * 108.83745 * 0.28732 * 20 19 18 22 22 H 0.96997 * 125.71634 * 179.97438 * 21 20 19 23 23 C 1.51095 * 122.58152 * 179.51191 * 20 19 18 24 24 C 1.53541 * 107.76868 * 344.59579 * 23 20 19 25 25 O 1.42998 * 109.68831 * 47.82234 * 24 23 20 26 26 C 1.43422 * 114.33344 * 288.96116 * 25 24 23 27 27 C 1.53038 * 109.52818 * 298.62213 * 12 11 10 28 28 H 1.08991 * 109.50017 * 181.32368 * 27 12 11 29 29 O 1.42903 * 109.49634 * 301.42599 * 27 12 11 30 30 C 1.46932 * 120.62912 * 331.80480 * 9 7 2 31 31 H 0.97001 * 120.00087 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.58381 * 6.58215 * 10 9 7 33 33 H 1.08994 * 109.58862 * 246.15198 * 10 9 7 34 34 H 1.08998 * 109.49768 * 294.68452 * 11 10 9 35 35 H 1.09000 * 109.49277 * 174.58861 * 11 10 9 36 36 H 0.96993 * 120.00045 * 95.02789 * 14 12 11 37 37 H 1.08004 * 126.52382 * 0.05135 * 18 17 15 38 38 H 1.08992 * 109.94693 * 224.93401 * 23 20 19 39 39 H 1.08993 * 109.66994 * 104.10215 * 23 20 19 40 40 H 1.09005 * 109.43757 * 287.75671 * 24 23 20 41 41 H 1.09001 * 109.43749 * 167.88663 * 24 23 20 42 42 H 1.09004 * 109.75830 * 291.10562 * 26 25 24 43 43 H 1.08994 * 109.76812 * 170.34189 * 26 25 24 44 44 H 0.96706 * 113.99601 * 179.97438 * 29 27 12 45 45 H 1.08999 * 109.58476 * 353.42051 * 30 9 7 46 46 H 1.08996 * 109.58546 * 113.70526 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2728 9 7 1.3700 -2.3626 0.3440 10 6 1.8138 -3.6528 -0.2011 11 6 2.0682 -4.6177 0.9612 12 6 0.8131 -4.7020 1.8330 13 1 -0.0273 -5.0420 1.2278 14 7 1.0416 -5.6494 2.9269 15 6 0.8376 -6.9672 2.7307 16 8 0.4634 -7.3700 1.6451 17 6 1.0658 -7.9156 3.8261 18 6 0.8973 -9.2856 3.7674 19 6 1.2221 -9.7878 5.0215 20 6 1.5821 -8.7401 5.8149 21 7 1.4871 -7.6011 5.1012 22 1 1.6857 -6.7098 5.4282 23 6 1.9902 -8.9158 7.2590 24 6 1.5482 -10.3173 7.7037 25 8 1.9485 -11.2814 6.7264 26 6 1.2111 -11.2188 5.4979 27 6 0.4988 -3.3208 2.4121 28 1 -0.3813 -3.3861 3.0516 29 8 1.6133 -2.8602 3.1789 30 6 0.2263 -2.3411 1.2662 31 1 -0.4850 0.8400 0.0004 32 1 2.7343 -3.5127 -0.7679 33 1 1.0400 -4.0603 -0.8516 34 1 2.9033 -4.2541 1.5599 35 1 2.3051 -5.6064 0.5680 36 1 1.3395 -5.3283 3.7923 37 1 0.5749 -9.8574 2.9097 38 1 1.5037 -8.1615 7.8773 39 1 3.0727 -8.8242 7.3481 40 1 0.4637 -10.3386 7.8111 41 1 2.0116 -10.5572 8.6608 42 1 0.1843 -11.5430 5.6675 43 1 1.6821 -11.8592 4.7522 44 1 1.4837 -1.9882 3.5764 45 1 0.0994 -1.3357 1.6675 46 1 -0.6773 -2.6392 0.7347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090316136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:18 Heat of formation + Delta-G solvation = -62.291716 kcal Electronic energy + Delta-G solvation = -29219.582232 eV Core-core repulsion = 25110.427326 eV Total energy + Delta-G solvation = -4109.154906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.88680 -39.62823 -38.35382 -37.72224 -34.86244 -34.43097 -32.76935 -32.33121 -31.63239 -29.73502 -29.18228 -28.89871 -26.00400 -24.86772 -23.95298 -22.64519 -22.16542 -21.44292 -20.15444 -19.62521 -19.25002 -18.42264 -17.27674 -16.65251 -16.21672 -16.14061 -15.64915 -15.50347 -15.07450 -14.97988 -14.64072 -14.31964 -14.00630 -13.94085 -13.80569 -13.67128 -13.33145 -13.27429 -12.85925 -12.75924 -12.41785 -12.14980 -12.05147 -11.73670 -11.31903 -11.27217 -11.20619 -10.82789 -10.65462 -10.52803 -10.27743 -10.16927 -10.11253 -9.96438 -9.70020 -9.26918 -9.08037 -8.82657 -8.55004 -8.17610 -6.72263 -5.85943 -3.26784 1.32040 2.35133 2.72418 3.23314 3.32908 3.40074 3.40412 3.42846 3.51483 4.25887 4.44003 4.47616 4.66474 4.75678 4.77057 4.86653 4.95070 5.12836 5.17866 5.24216 5.25609 5.34400 5.39383 5.43820 5.51844 5.54698 5.74742 5.89105 5.90506 5.97776 6.14300 6.19696 6.40381 6.47170 6.51182 6.63742 6.75544 6.78442 6.81921 6.93353 7.09848 7.12073 7.37464 7.63716 7.74265 8.14731 8.28159 8.38257 9.13554 9.76579 10.33650 11.23034 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029274 B = 0.002315 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.263969 B =12093.307496 C =12589.624028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.001 4.001 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.065 0.935 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.136 4.136 12 C 0.164 3.836 13 H 0.093 0.907 14 N -0.719 5.719 15 C 0.584 3.416 16 O -0.531 6.531 17 C -0.049 4.049 18 C -0.090 4.090 19 C -0.222 4.222 20 C 0.051 3.949 21 N -0.523 5.523 22 H 0.417 0.583 23 C -0.087 4.087 24 C 0.069 3.931 25 O -0.381 6.381 26 C 0.137 3.863 27 C 0.073 3.927 28 H 0.043 0.957 29 O -0.561 6.561 30 C 0.146 3.854 31 H 0.254 0.746 32 H 0.058 0.942 33 H 0.021 0.979 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.394 0.606 37 H 0.151 0.849 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.103 0.897 44 H 0.375 0.625 45 H 0.096 0.904 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.029 -17.372 17.017 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.199 4.199 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.083 0.917 9 N -0.305 5.305 10 C 0.021 3.979 11 C -0.177 4.177 12 C 0.060 3.940 13 H 0.111 0.889 14 N -0.368 5.368 15 C 0.371 3.629 16 O -0.407 6.407 17 C -0.162 4.162 18 C -0.116 4.116 19 C -0.229 4.229 20 C -0.068 4.068 21 N -0.118 5.118 22 H 0.254 0.746 23 C -0.125 4.125 24 C -0.008 4.008 25 O -0.299 6.299 26 C 0.060 3.940 27 C 0.012 3.988 28 H 0.061 0.939 29 O -0.367 6.367 30 C 0.018 3.982 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.228 0.772 37 H 0.168 0.832 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.075 0.925 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.121 0.879 44 H 0.222 0.778 45 H 0.114 0.886 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.061 -18.014 16.034 24.140 hybrid contribution 0.160 2.429 0.627 2.513 sum 1.221 -15.586 16.661 22.847 Atomic orbital electron populations 1.70012 1.05223 1.25534 1.54462 1.25033 0.95296 0.98405 1.01164 0.86293 0.79121 0.83543 0.77813 1.21383 1.21641 1.20506 1.19165 0.92560 0.84636 1.40904 0.91696 1.43875 1.35465 1.01785 1.49369 1.20903 0.97994 0.86366 0.92647 1.22311 0.97411 0.99457 0.98486 1.21056 0.99513 0.86102 0.87307 0.88892 1.46118 1.68614 1.06128 1.15948 1.17053 0.77793 0.81603 0.86456 1.90845 1.47132 1.78138 1.24613 1.20648 1.14882 0.95313 0.85341 1.20812 1.02134 0.91417 0.97270 1.19912 1.11933 0.95970 0.95074 1.20220 1.05892 0.85586 0.95124 1.41652 1.51465 1.08696 1.09989 0.74558 1.21020 1.02633 0.99482 0.89414 1.22534 0.99703 0.86611 0.91981 1.88021 1.61400 1.55410 1.25054 1.21049 0.96130 0.91460 0.85335 1.22849 0.87530 0.94126 0.94340 0.93925 1.86337 1.41981 1.38680 1.69659 1.21432 0.89780 0.98281 0.88669 0.93623 0.92359 0.96115 0.91279 0.92749 0.77242 0.83169 0.89539 0.89271 0.92499 0.88038 0.92005 0.87904 0.77775 0.88624 0.95328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.43 11.20 55.49 0.62 -24.81 16 2 C 0.00 -0.03 4.92 -17.43 -0.09 -0.12 16 3 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.24 -6.51 9.58 -15.06 -0.14 -6.65 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 9 N -0.58 -14.20 2.93 -172.31 -0.51 -14.71 16 10 C 0.15 3.19 6.52 -3.71 -0.02 3.16 16 11 C -0.14 -2.58 5.51 -26.61 -0.15 -2.73 16 12 C 0.16 2.88 2.20 -67.89 -0.15 2.73 16 13 H 0.09 1.78 7.57 -51.93 -0.39 1.39 16 14 N -0.72 -10.59 5.05 -55.07 -0.28 -10.87 16 15 C 0.58 9.19 7.75 -12.85 -0.10 9.10 16 16 O -0.53 -10.21 16.54 5.19 0.09 -10.12 16 17 C -0.05 -0.64 7.07 -81.75 -0.58 -1.22 16 18 C -0.09 -1.13 10.63 -39.35 -0.42 -1.55 16 19 C -0.22 -2.39 6.02 -105.01 -0.63 -3.02 16 20 C 0.05 0.49 7.14 -81.83 -0.58 -0.09 16 21 N -0.52 -5.22 5.98 -5.43 -0.03 -5.25 16 22 H 0.42 3.13 8.19 -40.82 -0.33 2.80 16 23 C -0.09 -0.56 6.56 -27.41 -0.18 -0.74 16 24 C 0.07 0.44 6.78 37.44 0.25 0.69 16 25 O -0.38 -3.49 10.74 -35.23 -0.38 -3.87 16 26 C 0.14 1.19 7.25 36.07 0.26 1.45 16 27 C 0.07 1.29 3.38 -26.61 -0.09 1.20 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 O -0.56 -9.50 12.08 -35.23 -0.43 -9.93 16 30 C 0.15 3.26 4.95 -3.70 -0.02 3.24 16 31 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.07 1.37 7.61 -51.93 -0.40 0.98 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.39 4.92 7.38 -40.82 -0.30 4.61 16 37 H 0.15 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 41 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.38 5.48 9.08 45.56 0.41 5.90 16 45 H 0.10 2.34 6.06 -51.93 -0.31 2.02 16 46 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 371.14 15.07 5.59 5.59 Total: -1.00 -33.02 371.14 -8.92 -41.93 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -5.93 Total: 10.45 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -2.63 Total: 5.45 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: -0.19 Total: -55.63 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.72 Total: -23.91 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.02 -8.92 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090316136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.359 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds