Wall clock time and date at job start Tue Mar 31 2020 18:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47183 * 270.00415 * 3 2 1 5 5 H 1.48500 * 109.46837 * 30.00616 * 3 2 1 6 6 H 1.48500 * 109.47014 * 149.99991 * 3 2 1 7 7 C 1.38817 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99755 * 163.07783 * 7 2 1 9 9 N 1.36934 * 119.99852 * 343.08533 * 7 2 1 10 10 C 1.46926 * 120.63321 * 151.82978 * 9 7 2 11 11 C 1.53196 * 108.77289 * 126.36530 * 10 9 7 12 12 C 1.53038 * 109.31215 * 54.63904 * 11 10 9 13 13 H 1.09003 * 109.46179 * 58.64405 * 12 11 10 14 14 N 1.46507 * 109.45623 * 178.61190 * 12 11 10 15 15 C 1.34777 * 119.99712 * 275.02510 * 14 12 11 16 16 O 1.21694 * 120.00448 * 359.97438 * 15 14 12 17 17 C 1.46677 * 119.99861 * 180.02562 * 15 14 12 18 18 C 1.38152 * 126.19397 * 179.97438 * 17 15 14 19 19 C 1.38942 * 106.95377 * 180.02562 * 18 17 15 20 20 C 1.36270 * 108.02156 * 359.81551 * 19 18 17 21 21 N 1.34745 * 108.83745 * 0.28732 * 20 19 18 22 22 H 0.96997 * 125.71634 * 179.97438 * 21 20 19 23 23 C 1.51095 * 122.58152 * 179.51191 * 20 19 18 24 24 C 1.53541 * 107.76868 * 344.59579 * 23 20 19 25 25 O 1.42998 * 109.68831 * 47.82234 * 24 23 20 26 26 C 1.43422 * 114.33344 * 288.96116 * 25 24 23 27 27 C 1.53038 * 109.52818 * 298.62213 * 12 11 10 28 28 H 1.08991 * 109.50017 * 181.32368 * 27 12 11 29 29 O 1.42903 * 109.49634 * 301.42599 * 27 12 11 30 30 C 1.46932 * 120.62912 * 331.80480 * 9 7 2 31 31 H 0.97001 * 120.00087 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.58381 * 6.58215 * 10 9 7 33 33 H 1.08994 * 109.58862 * 246.15198 * 10 9 7 34 34 H 1.08998 * 109.49768 * 294.68452 * 11 10 9 35 35 H 1.09000 * 109.49277 * 174.58861 * 11 10 9 36 36 H 0.96993 * 120.00045 * 95.02789 * 14 12 11 37 37 H 1.08004 * 126.52382 * 0.05135 * 18 17 15 38 38 H 1.08992 * 109.94693 * 224.93401 * 23 20 19 39 39 H 1.08993 * 109.66994 * 104.10215 * 23 20 19 40 40 H 1.09005 * 109.43757 * 287.75671 * 24 23 20 41 41 H 1.09001 * 109.43749 * 167.88663 * 24 23 20 42 42 H 1.09004 * 109.75830 * 291.10562 * 26 25 24 43 43 H 1.08994 * 109.76812 * 170.34189 * 26 25 24 44 44 H 0.96706 * 113.99601 * 179.97438 * 29 27 12 45 45 H 1.08999 * 109.58476 * 353.42051 * 30 9 7 46 46 H 1.08996 * 109.58546 * 113.70526 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2223 -0.2728 9 7 1.3700 -2.3626 0.3440 10 6 1.8138 -3.6528 -0.2011 11 6 2.0682 -4.6177 0.9612 12 6 0.8131 -4.7020 1.8330 13 1 -0.0273 -5.0420 1.2278 14 7 1.0416 -5.6494 2.9269 15 6 0.8376 -6.9672 2.7307 16 8 0.4634 -7.3700 1.6451 17 6 1.0658 -7.9156 3.8261 18 6 0.8973 -9.2856 3.7674 19 6 1.2221 -9.7878 5.0215 20 6 1.5821 -8.7401 5.8149 21 7 1.4871 -7.6011 5.1012 22 1 1.6857 -6.7098 5.4282 23 6 1.9902 -8.9158 7.2590 24 6 1.5482 -10.3173 7.7037 25 8 1.9485 -11.2814 6.7264 26 6 1.2111 -11.2188 5.4979 27 6 0.4988 -3.3208 2.4121 28 1 -0.3813 -3.3861 3.0516 29 8 1.6133 -2.8602 3.1789 30 6 0.2263 -2.3411 1.2662 31 1 -0.4850 0.8400 0.0004 32 1 2.7343 -3.5127 -0.7679 33 1 1.0400 -4.0603 -0.8516 34 1 2.9033 -4.2541 1.5599 35 1 2.3051 -5.6064 0.5680 36 1 1.3395 -5.3283 3.7923 37 1 0.5749 -9.8574 2.9097 38 1 1.5037 -8.1615 7.8773 39 1 3.0727 -8.8242 7.3481 40 1 0.4637 -10.3386 7.8111 41 1 2.0116 -10.5572 8.6608 42 1 0.1843 -11.5430 5.6675 43 1 1.6821 -11.8592 4.7522 44 1 1.4837 -1.9882 3.5764 45 1 0.0994 -1.3357 1.6675 46 1 -0.6773 -2.6392 0.7347 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090316136.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:17 Heat of formation + Delta-G solvation = -88.019653 kcal Electronic energy + Delta-G solvation = -29220.697879 eV Core-core repulsion = 25110.427326 eV Total energy + Delta-G solvation = -4110.270553 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.73187 -40.93118 -39.46595 -38.77216 -36.53494 -35.83680 -34.01362 -33.42015 -32.59123 -31.28000 -30.77760 -29.87921 -27.37290 -26.13364 -24.75693 -24.08594 -23.61866 -22.69356 -21.35175 -21.01238 -20.03037 -19.59690 -18.98743 -17.58771 -17.33878 -17.13127 -16.92350 -16.79710 -16.48801 -15.97252 -15.82009 -15.53095 -15.43288 -15.21644 -15.13626 -14.74522 -14.62823 -14.43350 -14.06056 -13.82293 -13.69187 -13.48864 -13.18878 -13.01975 -12.83799 -12.64590 -12.42599 -12.38105 -12.28785 -12.06574 -11.87050 -11.75756 -11.54161 -11.22188 -10.80152 -10.76112 -10.60833 -10.19394 -9.90224 -9.03238 -8.69823 -7.89756 -5.34038 0.34037 1.46545 1.48870 1.51198 1.58491 1.88545 2.05402 2.27057 2.50315 2.97171 3.22450 3.34694 3.58567 3.66303 3.76762 3.84443 3.95781 3.98535 4.04695 4.19696 4.30110 4.34638 4.35717 4.55452 4.56189 4.64854 4.67030 4.77259 4.81637 4.82798 4.90159 4.95395 5.01251 5.03247 5.11219 5.14417 5.36003 5.39687 5.52980 5.63342 5.65861 5.76712 6.23621 6.33766 6.35561 6.51180 6.86670 7.07673 7.12737 7.80118 8.33591 9.16933 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.029274 B = 0.002315 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.263969 B =12093.307496 C =12589.624028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.968 3.032 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.272 1.272 7 C -0.255 4.255 8 H 0.061 0.939 9 N -0.598 5.598 10 C 0.145 3.855 11 C -0.120 4.120 12 C 0.170 3.830 13 H 0.076 0.924 14 N -0.706 5.706 15 C 0.586 3.414 16 O -0.574 6.574 17 C -0.076 4.076 18 C -0.098 4.098 19 C -0.239 4.239 20 C 0.065 3.935 21 N -0.511 5.511 22 H 0.429 0.571 23 C -0.085 4.085 24 C 0.062 3.938 25 O -0.398 6.398 26 C 0.138 3.862 27 C 0.092 3.908 28 H 0.070 0.930 29 O -0.561 6.561 30 C 0.150 3.850 31 H 0.251 0.749 32 H 0.056 0.944 33 H 0.012 0.988 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.408 0.592 37 H 0.145 0.855 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.126 0.874 42 H 0.074 0.926 43 H 0.107 0.893 44 H 0.388 0.612 45 H 0.074 0.926 46 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.016 -17.850 20.015 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.796 3.204 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.197 1.197 7 C -0.385 4.385 8 H 0.079 0.921 9 N -0.321 5.321 10 C 0.018 3.982 11 C -0.160 4.160 12 C 0.065 3.935 13 H 0.094 0.906 14 N -0.356 5.356 15 C 0.375 3.625 16 O -0.454 6.454 17 C -0.189 4.189 18 C -0.125 4.125 19 C -0.245 4.245 20 C -0.056 4.056 21 N -0.107 5.107 22 H 0.269 0.731 23 C -0.123 4.123 24 C -0.015 4.015 25 O -0.316 6.316 26 C 0.061 3.939 27 C 0.031 3.969 28 H 0.088 0.912 29 O -0.368 6.368 30 C 0.023 3.977 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.244 0.756 37 H 0.163 0.837 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.144 0.856 42 H 0.092 0.908 43 H 0.125 0.875 44 H 0.237 0.763 45 H 0.093 0.907 46 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 2.069 -18.482 19.081 26.645 hybrid contribution -0.137 2.496 -0.272 2.514 sum 1.932 -15.986 18.809 24.760 Atomic orbital electron populations 1.70157 1.06489 1.25958 1.55559 1.25718 0.96003 1.01198 1.01266 0.85284 0.78104 0.79641 0.77395 1.21691 1.21575 1.19657 1.19404 0.92612 0.85767 1.40724 0.92111 1.44094 1.35722 1.02009 1.50239 1.20970 0.97507 0.86041 0.93663 1.22077 0.97846 0.98516 0.97532 1.20748 0.98156 0.86733 0.87851 0.90605 1.45818 1.68468 1.05518 1.15747 1.17348 0.76752 0.81818 0.86563 1.90818 1.49201 1.78796 1.26553 1.20184 1.17820 0.94817 0.86068 1.20975 1.01905 0.91525 0.98082 1.20203 1.12268 0.97498 0.94517 1.20860 1.03376 0.84913 0.96420 1.41584 1.50698 1.09593 1.08841 0.73108 1.21210 1.03430 1.00393 0.87268 1.22806 1.00517 0.85957 0.92239 1.88003 1.61842 1.56420 1.25368 1.21103 0.96920 0.90309 0.85586 1.22484 0.88825 0.92614 0.92964 0.91239 1.86309 1.41600 1.39657 1.69223 1.21327 0.88392 0.98392 0.89591 0.93955 0.92518 0.96987 0.91676 0.92541 0.75576 0.83704 0.86823 0.88337 0.91835 0.85609 0.90815 0.87543 0.76342 0.90746 0.97734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.26 11.20 21.65 0.24 -53.02 16 2 C -0.05 -2.52 4.92 84.86 0.42 -2.10 16 3 Si 0.97 43.62 29.59 68.60 2.03 45.65 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.25 -13.76 9.58 84.04 0.81 -12.96 16 8 H 0.06 3.27 7.88 -2.91 -0.02 3.25 16 9 N -0.60 -29.57 2.93 -699.08 -2.05 -31.62 16 10 C 0.14 6.35 6.52 86.36 0.56 6.92 16 11 C -0.12 -4.52 5.51 30.67 0.17 -4.35 16 12 C 0.17 5.91 2.20 45.02 0.10 6.01 16 13 H 0.08 2.96 7.57 -2.39 -0.02 2.94 16 14 N -0.71 -20.02 5.05 -446.36 -2.25 -22.28 16 15 C 0.59 18.31 7.75 86.45 0.67 18.98 16 16 O -0.57 -22.56 16.54 -4.33 -0.07 -22.63 16 17 C -0.08 -1.94 7.07 40.37 0.29 -1.65 16 18 C -0.10 -2.42 10.63 22.42 0.24 -2.18 16 19 C -0.24 -4.75 6.02 -20.12 -0.12 -4.87 16 20 C 0.07 1.09 7.14 41.78 0.30 1.39 16 21 N -0.51 -9.04 5.98 -171.10 -1.02 -10.06 16 22 H 0.43 5.20 8.19 -92.71 -0.76 4.44 16 23 C -0.09 -0.77 6.56 30.15 0.20 -0.57 16 24 C 0.06 0.57 6.78 72.16 0.49 1.06 16 25 O -0.40 -6.32 10.74 -148.98 -1.60 -7.92 16 26 C 0.14 2.16 7.25 71.27 0.52 2.68 16 27 C 0.09 3.18 3.38 30.67 0.10 3.28 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 O -0.56 -17.92 12.08 -148.98 -1.80 -19.72 16 30 C 0.15 6.80 4.95 86.36 0.43 7.22 16 31 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 32 H 0.06 2.45 7.93 -2.39 -0.02 2.44 16 33 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 2.52 7.61 -2.39 -0.02 2.51 16 35 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.41 9.29 7.38 -92.71 -0.68 8.61 16 37 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 38 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 0.51 8.09 -2.38 -0.02 0.49 16 41 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.39 10.53 9.08 -74.05 -0.67 9.86 16 45 H 0.07 3.70 6.06 -2.39 -0.01 3.68 16 46 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -72.10 371.14 -2.44 -74.54 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: -1.08 Total: 28.21 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 5.16 Total: 18.85 kcal Atomic # 7 Polarization: -111.90 SS G_CDS: -5.08 Total: -116.98 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -3.47 Total: -50.27 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -72.10 -2.44 -74.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090316136.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.475 kcal (2) G-P(sol) polarization free energy of solvation -72.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds