Wall clock time and date at job start Tue Mar 31 2020 18:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 119.99895 * 2 1 4 4 H 1.48502 * 109.47455 * 274.89880 * 3 2 1 5 5 H 1.48507 * 109.47528 * 34.89440 * 3 2 1 6 6 H 1.48506 * 109.47365 * 154.89426 * 3 2 1 7 7 C 1.38815 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99487 * 339.75576 * 7 2 1 9 9 N 1.36938 * 119.99917 * 159.75147 * 7 2 1 10 10 C 1.46919 * 120.63234 * 332.79892 * 9 7 2 11 11 C 1.53192 * 108.77668 * 233.60819 * 10 9 7 12 12 C 1.53042 * 109.30933 * 305.36413 * 11 10 9 13 13 H 1.08993 * 109.45126 * 301.34683 * 12 11 10 14 14 N 1.46497 * 109.45928 * 181.38387 * 12 11 10 15 15 C 1.34777 * 120.00013 * 84.93256 * 14 12 11 16 16 O 1.21579 * 120.00305 * 359.97438 * 15 14 12 17 17 C 1.47521 * 120.00063 * 180.02562 * 15 14 12 18 18 O 1.35186 * 127.15240 * 0.02740 * 17 15 14 19 19 N 1.21470 * 111.55239 * 179.91674 * 18 17 15 20 20 C 1.29069 * 111.68959 * 359.91339 * 19 18 17 21 21 C 1.35237 * 127.15235 * 179.70598 * 17 15 14 22 22 C 1.50114 * 131.33652 * 1.07027 * 21 17 15 23 23 C 1.53580 * 108.07857 * 163.21822 * 22 21 17 24 24 C 1.53006 * 109.79869 * 49.84072 * 23 22 21 25 25 C 1.50643 * 130.34260 * 180.31503 * 20 19 18 26 26 C 1.53043 * 109.53837 * 61.36739 * 12 11 10 27 27 H 1.09001 * 109.49791 * 178.64952 * 26 12 11 28 28 O 1.42897 * 109.49985 * 58.58140 * 26 12 11 29 29 C 1.46922 * 120.62391 * 152.79551 * 9 7 2 30 30 H 0.96996 * 120.00104 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.58879 * 113.81776 * 10 9 7 32 32 H 1.09004 * 109.58686 * 353.39255 * 10 9 7 33 33 H 1.08996 * 109.50273 * 185.41432 * 11 10 9 34 34 H 1.09005 * 109.49668 * 65.31326 * 11 10 9 35 35 H 0.97006 * 120.00239 * 264.93259 * 14 12 11 36 36 H 1.09005 * 109.89427 * 43.47504 * 22 21 17 37 37 H 1.08995 * 109.59553 * 282.79115 * 22 21 17 38 38 H 1.08997 * 109.41524 * 289.74219 * 23 22 21 39 39 H 1.08990 * 109.36317 * 169.90999 * 23 22 21 40 40 H 1.09007 * 109.37238 * 168.10958 * 24 23 22 41 41 H 1.08994 * 109.38343 * 48.45154 * 24 23 22 42 42 H 1.09004 * 109.74297 * 282.88004 * 25 20 19 43 43 H 1.08997 * 109.74561 * 43.58444 * 25 20 19 44 44 H 0.96698 * 113.99829 * 179.97438 * 28 26 12 45 45 H 1.08990 * 109.59130 * 6.60737 * 29 9 7 46 46 H 1.09000 * 109.58456 * 246.17376 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3941 2.1062 -1.3950 5 1 1.5031 2.6207 0.8009 6 1 3.5956 1.4126 0.5941 7 6 2.0103 -1.2022 -0.0005 8 1 1.5203 -2.1087 0.3227 9 7 3.3162 -1.2386 -0.4110 10 6 3.8268 -0.2512 -1.3716 11 6 4.4778 -0.9936 -2.5428 12 6 5.5403 -1.9548 -2.0048 13 1 6.2866 -1.3933 -1.4429 14 7 6.1881 -2.6425 -3.1245 15 6 7.2216 -2.0613 -3.7652 16 8 7.6161 -0.9662 -3.4143 17 6 7.8736 -2.7536 -4.8930 18 8 7.5549 -3.9649 -5.4017 19 7 8.2769 -4.2621 -6.3322 20 6 9.1448 -3.3386 -6.5765 21 6 8.9104 -2.3058 -5.6369 22 6 9.7139 -1.0402 -5.5576 23 6 11.0083 -1.2466 -6.3580 24 6 10.6775 -1.8059 -7.7432 25 6 10.2239 -3.2672 -7.6252 26 6 4.8799 -2.9858 -1.0866 27 1 5.6333 -3.6845 -0.7229 28 8 3.8785 -3.7001 -1.8139 29 6 4.2333 -2.2659 0.1011 30 1 -0.4850 0.8400 -0.0004 31 1 4.5670 0.3837 -0.8846 32 1 3.0030 0.3606 -1.7395 33 1 4.9452 -0.2741 -3.2151 34 1 3.7178 -1.5573 -3.0839 35 1 5.8731 -3.5162 -3.4047 36 1 9.9551 -0.8185 -4.5179 37 1 9.1427 -0.2171 -5.9868 38 1 11.6536 -1.9477 -5.8288 39 1 11.5224 -0.2917 -6.4661 40 1 11.5635 -1.7522 -8.3759 41 1 9.8790 -1.2144 -8.1909 42 1 11.0669 -3.8916 -7.3292 43 1 9.8302 -3.6088 -8.5824 44 1 3.4180 -4.3719 -1.2927 45 1 3.6779 -2.9834 0.7049 46 1 5.0067 -1.7953 0.7081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090430784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:40 Heat of formation + Delta-G solvation = -4.547226 kcal Electronic energy + Delta-G solvation = -29704.537895 eV Core-core repulsion = 25597.886979 eV Total energy + Delta-G solvation = -4106.650917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.18527 -40.02062 -38.36660 -37.97804 -35.18735 -34.60774 -33.21220 -32.64999 -32.00693 -30.60611 -29.92276 -29.29864 -25.82489 -25.05566 -23.51978 -23.33936 -22.85000 -21.73033 -20.52057 -20.09401 -19.74281 -18.20175 -17.94764 -17.14497 -16.55938 -16.06548 -15.99397 -15.36393 -15.24163 -14.89082 -14.67535 -14.37298 -14.32376 -14.23770 -14.08394 -13.56776 -13.44022 -12.98474 -12.96669 -12.80522 -12.39796 -12.13345 -12.01389 -11.98449 -11.50870 -11.39563 -11.35423 -11.17361 -10.90631 -10.87650 -10.45220 -10.29372 -10.19642 -10.13028 -9.94192 -9.72394 -9.64930 -9.49259 -8.94044 -8.61004 -6.99955 -5.95545 -3.31868 0.64973 1.80670 2.45614 2.90251 3.14823 3.34076 3.49366 3.51411 3.57336 4.15591 4.37551 4.43327 4.49943 4.52980 4.60101 4.72205 4.85767 4.91354 5.01740 5.05875 5.09471 5.18153 5.21010 5.36747 5.37951 5.41959 5.52373 5.54681 5.61253 5.66552 5.71734 5.85988 5.88627 5.91751 5.99576 6.18865 6.22816 6.36937 6.42398 6.54533 6.63219 6.92850 7.33492 7.83882 7.88944 7.97359 8.04448 8.30160 8.89928 9.69767 10.05301 11.20167 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022181 B = 0.002784 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.052550 B =10055.708953 C =10771.851593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.881 3.119 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.257 4.257 8 H 0.085 0.915 9 N -0.596 5.596 10 C 0.129 3.871 11 C -0.140 4.140 12 C 0.161 3.839 13 H 0.097 0.903 14 N -0.701 5.701 15 C 0.602 3.398 16 O -0.513 6.513 17 C -0.075 4.075 18 O 0.101 5.899 19 N -0.335 5.335 20 C 0.015 3.985 21 C -0.123 4.123 22 C -0.049 4.049 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.040 4.040 26 C 0.081 3.919 27 H 0.053 0.947 28 O -0.553 6.553 29 C 0.122 3.878 30 H 0.263 0.737 31 H 0.028 0.972 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.410 0.590 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.377 0.623 45 H 0.072 0.928 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.206 -6.869 -12.331 26.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.385 4.385 8 H 0.103 0.897 9 N -0.319 5.319 10 C 0.003 3.997 11 C -0.180 4.180 12 C 0.057 3.943 13 H 0.115 0.885 14 N -0.351 5.351 15 C 0.385 3.615 16 O -0.389 6.389 17 C -0.140 4.140 18 O 0.032 5.968 19 N -0.038 5.038 20 C -0.146 4.146 21 C -0.128 4.128 22 C -0.087 4.087 23 C -0.159 4.159 24 C -0.158 4.158 25 C -0.078 4.078 26 C 0.019 3.981 27 H 0.070 0.930 28 O -0.358 6.358 29 C -0.006 4.006 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.246 0.754 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.225 0.775 45 H 0.091 0.909 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 22.225 -6.773 -13.037 26.641 hybrid contribution 0.217 0.773 0.448 0.920 sum 22.442 -5.999 -12.588 26.421 Atomic orbital electron populations 1.69830 1.05719 1.26561 1.52948 1.25254 0.95224 0.97615 0.99470 0.86968 0.80113 0.84697 0.77021 1.21633 1.23177 1.19381 1.18853 0.84640 0.94644 1.40403 0.89740 1.44198 1.08361 1.32311 1.47050 1.21343 0.97232 0.91919 0.89178 1.22355 0.97816 0.98118 0.99686 1.21123 0.94130 0.93005 0.86009 0.88543 1.46094 1.32063 1.22883 1.34035 1.16539 0.80171 0.84623 0.80208 1.90859 1.64443 1.18790 1.64805 1.23553 1.00714 0.88809 1.00890 1.85263 1.45947 1.30400 1.35230 1.73432 1.04570 1.22755 1.03001 1.23417 0.99455 0.91125 1.00579 1.21108 0.97006 0.99436 0.95247 1.20123 0.94159 0.91911 1.02467 1.21678 0.96936 1.01881 0.95391 1.21629 1.01978 0.94429 0.97731 1.20125 0.93900 0.98492 0.95257 1.22584 0.89685 0.92691 0.93091 0.92972 1.86448 1.53914 1.54597 1.40867 1.21576 0.93489 0.92581 0.92921 0.92760 0.95385 0.90626 0.92390 0.90285 0.75432 0.88831 0.89369 0.91439 0.90540 0.90416 0.91181 0.89315 0.89438 0.77542 0.90920 0.94910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.68 13.97 55.49 0.78 -26.90 16 2 C 0.02 0.67 5.24 -17.43 -0.09 0.58 16 3 Si 0.88 22.36 24.34 -169.99 -4.14 18.22 16 4 H -0.29 -7.17 6.70 56.52 0.38 -6.79 16 5 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 6 H -0.27 -6.64 6.45 56.52 0.36 -6.27 16 7 C -0.26 -6.98 10.04 -15.06 -0.15 -7.13 16 8 H 0.09 2.43 8.05 -52.49 -0.42 2.00 16 9 N -0.60 -13.60 2.72 -172.33 -0.47 -14.07 16 10 C 0.13 2.84 4.19 -3.71 -0.02 2.82 16 11 C -0.14 -2.61 5.51 -26.61 -0.15 -2.75 16 12 C 0.16 2.54 2.20 -67.89 -0.15 2.39 16 13 H 0.10 1.57 7.58 -51.93 -0.39 1.17 16 14 N -0.70 -9.67 5.05 -54.82 -0.28 -9.94 16 15 C 0.60 8.64 7.78 -12.48 -0.10 8.54 16 16 O -0.51 -8.51 15.60 5.30 0.08 -8.43 16 17 C -0.08 -0.98 7.28 -36.87 -0.27 -1.24 16 18 O 0.10 1.30 11.10 13.83 0.15 1.45 16 19 N -0.33 -4.27 12.03 33.15 0.40 -3.87 16 20 C 0.01 0.16 7.22 -82.51 -0.60 -0.43 16 21 C -0.12 -1.43 6.03 -104.70 -0.63 -2.06 16 22 C -0.05 -0.47 5.59 -27.87 -0.16 -0.62 16 23 C -0.12 -0.80 5.88 -26.43 -0.16 -0.95 16 24 C -0.12 -0.70 5.83 -26.49 -0.15 -0.86 16 25 C -0.04 -0.29 6.32 -27.67 -0.17 -0.46 16 26 C 0.08 1.20 3.38 -26.61 -0.09 1.11 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 O -0.55 -8.44 12.09 -35.23 -0.43 -8.86 16 29 C 0.12 2.17 6.16 -3.71 -0.02 2.15 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.03 0.61 6.98 -51.93 -0.36 0.25 16 32 H 0.08 1.84 4.49 -51.93 -0.23 1.60 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.59 7.61 -51.93 -0.40 1.19 16 35 H 0.41 5.11 8.10 -40.82 -0.33 4.78 16 36 H 0.09 0.96 7.78 -51.93 -0.40 0.56 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 42 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.38 4.58 9.08 45.56 0.41 4.99 16 45 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -32.86 363.04 -7.28 -40.15 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.96 Total: 5.71 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.90 Total: 1.07 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.43 Total: -54.79 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.19 Total: -15.84 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.86 -7.28 -40.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090430784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.602 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds