Wall clock time and date at job start Tue Mar 31 2020 18:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 119.99895 * 2 1 4 4 H 1.48502 * 109.47455 * 274.89880 * 3 2 1 5 5 H 1.48507 * 109.47528 * 34.89440 * 3 2 1 6 6 H 1.48506 * 109.47365 * 154.89426 * 3 2 1 7 7 C 1.38815 * 120.00124 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99487 * 339.75576 * 7 2 1 9 9 N 1.36938 * 119.99917 * 159.75147 * 7 2 1 10 10 C 1.46919 * 120.63234 * 332.79892 * 9 7 2 11 11 C 1.53192 * 108.77668 * 233.60819 * 10 9 7 12 12 C 1.53042 * 109.30933 * 305.36413 * 11 10 9 13 13 H 1.08993 * 109.45126 * 301.34683 * 12 11 10 14 14 N 1.46497 * 109.45928 * 181.38387 * 12 11 10 15 15 C 1.34777 * 120.00013 * 84.93256 * 14 12 11 16 16 O 1.21579 * 120.00305 * 359.97438 * 15 14 12 17 17 C 1.47521 * 120.00063 * 180.02562 * 15 14 12 18 18 O 1.35186 * 127.15240 * 0.02740 * 17 15 14 19 19 N 1.21470 * 111.55239 * 179.91674 * 18 17 15 20 20 C 1.29069 * 111.68959 * 359.91339 * 19 18 17 21 21 C 1.35237 * 127.15235 * 179.70598 * 17 15 14 22 22 C 1.50114 * 131.33652 * 1.07027 * 21 17 15 23 23 C 1.53580 * 108.07857 * 163.21822 * 22 21 17 24 24 C 1.53006 * 109.79869 * 49.84072 * 23 22 21 25 25 C 1.50643 * 130.34260 * 180.31503 * 20 19 18 26 26 C 1.53043 * 109.53837 * 61.36739 * 12 11 10 27 27 H 1.09001 * 109.49791 * 178.64952 * 26 12 11 28 28 O 1.42897 * 109.49985 * 58.58140 * 26 12 11 29 29 C 1.46922 * 120.62391 * 152.79551 * 9 7 2 30 30 H 0.96996 * 120.00104 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.58879 * 113.81776 * 10 9 7 32 32 H 1.09004 * 109.58686 * 353.39255 * 10 9 7 33 33 H 1.08996 * 109.50273 * 185.41432 * 11 10 9 34 34 H 1.09005 * 109.49668 * 65.31326 * 11 10 9 35 35 H 0.97006 * 120.00239 * 264.93259 * 14 12 11 36 36 H 1.09005 * 109.89427 * 43.47504 * 22 21 17 37 37 H 1.08995 * 109.59553 * 282.79115 * 22 21 17 38 38 H 1.08997 * 109.41524 * 289.74219 * 23 22 21 39 39 H 1.08990 * 109.36317 * 169.90999 * 23 22 21 40 40 H 1.09007 * 109.37238 * 168.10958 * 24 23 22 41 41 H 1.08994 * 109.38343 * 48.45154 * 24 23 22 42 42 H 1.09004 * 109.74297 * 282.88004 * 25 20 19 43 43 H 1.08997 * 109.74561 * 43.58444 * 25 20 19 44 44 H 0.96698 * 113.99829 * 179.97438 * 28 26 12 45 45 H 1.08990 * 109.59130 * 6.60737 * 29 9 7 46 46 H 1.09000 * 109.58456 * 246.17376 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3941 2.1062 -1.3950 5 1 1.5031 2.6207 0.8009 6 1 3.5956 1.4126 0.5941 7 6 2.0103 -1.2022 -0.0005 8 1 1.5203 -2.1087 0.3227 9 7 3.3162 -1.2386 -0.4110 10 6 3.8268 -0.2512 -1.3716 11 6 4.4778 -0.9936 -2.5428 12 6 5.5403 -1.9548 -2.0048 13 1 6.2866 -1.3933 -1.4429 14 7 6.1881 -2.6425 -3.1245 15 6 7.2216 -2.0613 -3.7652 16 8 7.6161 -0.9662 -3.4143 17 6 7.8736 -2.7536 -4.8930 18 8 7.5549 -3.9649 -5.4017 19 7 8.2769 -4.2621 -6.3322 20 6 9.1448 -3.3386 -6.5765 21 6 8.9104 -2.3058 -5.6369 22 6 9.7139 -1.0402 -5.5576 23 6 11.0083 -1.2466 -6.3580 24 6 10.6775 -1.8059 -7.7432 25 6 10.2239 -3.2672 -7.6252 26 6 4.8799 -2.9858 -1.0866 27 1 5.6333 -3.6845 -0.7229 28 8 3.8785 -3.7001 -1.8139 29 6 4.2333 -2.2659 0.1011 30 1 -0.4850 0.8400 -0.0004 31 1 4.5670 0.3837 -0.8846 32 1 3.0030 0.3606 -1.7395 33 1 4.9452 -0.2741 -3.2151 34 1 3.7178 -1.5573 -3.0839 35 1 5.8731 -3.5162 -3.4047 36 1 9.9551 -0.8185 -4.5179 37 1 9.1427 -0.2171 -5.9868 38 1 11.6536 -1.9477 -5.8288 39 1 11.5224 -0.2917 -6.4661 40 1 11.5635 -1.7522 -8.3759 41 1 9.8790 -1.2144 -8.1909 42 1 11.0669 -3.8916 -7.3292 43 1 9.8302 -3.6088 -8.5824 44 1 3.4180 -4.3719 -1.2927 45 1 3.6779 -2.9834 0.7049 46 1 5.0067 -1.7953 0.7081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090430784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:39 Heat of formation + Delta-G solvation = -29.688411 kcal Electronic energy + Delta-G solvation = -29705.628099 eV Core-core repulsion = 25597.886979 eV Total energy + Delta-G solvation = -4107.741120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.08625 -41.25198 -39.66739 -38.71307 -36.74959 -35.85678 -34.19868 -33.82387 -33.41059 -32.01789 -31.08120 -30.55980 -27.24643 -26.03751 -24.64414 -24.38486 -24.24170 -23.22240 -21.53102 -21.16167 -20.73681 -19.30998 -18.88434 -18.85832 -17.83790 -17.58466 -16.94949 -16.83627 -16.11385 -16.07801 -15.89465 -15.73305 -15.65949 -15.16561 -15.02571 -14.86447 -14.69617 -14.34312 -13.97357 -13.87461 -13.68794 -13.59740 -13.41263 -13.13551 -12.87405 -12.77319 -12.44283 -12.16020 -11.95690 -11.91376 -11.87439 -11.77042 -11.56074 -11.45498 -11.32407 -11.09285 -11.00716 -10.67401 -10.58769 -10.16573 -8.90972 -8.14867 -5.45603 -0.34158 0.95224 1.31024 1.40835 1.43008 1.49038 1.80885 2.08640 2.42522 2.82417 3.02491 3.28033 3.31386 3.44737 3.66367 3.74995 3.79482 3.91019 3.93338 3.96737 4.17428 4.21690 4.27656 4.35732 4.40014 4.43006 4.51357 4.57663 4.69976 4.77616 4.83862 4.88069 4.88805 4.95571 4.96267 4.99595 5.12224 5.12893 5.23412 5.27810 5.36878 5.38511 5.86858 6.14011 6.22502 6.81583 6.87027 6.96106 7.00798 7.62423 8.02419 9.04743 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022181 B = 0.002784 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.052550 B =10055.708953 C =10771.851593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.037 4.037 3 Si 0.939 3.061 4 H -0.285 1.285 5 H -0.312 1.312 6 H -0.255 1.255 7 C -0.235 4.235 8 H 0.060 0.940 9 N -0.609 5.609 10 C 0.126 3.874 11 C -0.128 4.128 12 C 0.165 3.835 13 H 0.099 0.901 14 N -0.692 5.692 15 C 0.606 3.394 16 O -0.537 6.537 17 C -0.093 4.093 18 O 0.090 5.910 19 N -0.354 5.354 20 C 0.020 3.980 21 C -0.122 4.122 22 C -0.053 4.053 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.042 4.042 26 C 0.093 3.907 27 H 0.094 0.906 28 O -0.568 6.568 29 C 0.113 3.887 30 H 0.260 0.740 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.418 0.582 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.391 0.609 45 H 0.078 0.922 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.758 -7.482 -13.499 30.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.232 4.232 3 Si 0.769 3.231 4 H -0.213 1.213 5 H -0.242 1.242 6 H -0.180 1.180 7 C -0.365 4.365 8 H 0.078 0.922 9 N -0.333 5.333 10 C 0.000 4.000 11 C -0.169 4.169 12 C 0.061 3.939 13 H 0.117 0.883 14 N -0.342 5.342 15 C 0.390 3.610 16 O -0.415 6.415 17 C -0.157 4.157 18 O 0.023 5.977 19 N -0.059 5.059 20 C -0.141 4.141 21 C -0.127 4.127 22 C -0.090 4.090 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.080 4.080 26 C 0.033 3.967 27 H 0.111 0.889 28 O -0.375 6.375 29 C -0.012 4.012 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.255 0.745 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.241 0.759 45 H 0.097 0.903 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 25.818 -7.431 -14.200 30.388 hybrid contribution -0.832 0.853 0.760 1.413 sum 24.986 -6.578 -13.440 29.124 Atomic orbital electron populations 1.69953 1.07290 1.26969 1.56211 1.25846 0.95770 1.00736 1.00821 0.86026 0.79226 0.80939 0.76951 1.21253 1.24164 1.17950 1.18853 0.86400 0.93441 1.37792 0.92208 1.44303 1.07715 1.33609 1.47690 1.21305 0.96495 0.92025 0.90128 1.22151 0.98081 0.98382 0.98236 1.20957 0.93412 0.92954 0.86567 0.88315 1.45893 1.31772 1.22984 1.33550 1.16619 0.79903 0.84257 0.80200 1.90843 1.65196 1.19840 1.65619 1.23371 1.01592 0.89423 1.01288 1.85241 1.46431 1.30395 1.35624 1.73419 1.05417 1.23683 1.03390 1.24051 0.99329 0.90004 1.00685 1.21521 0.96329 1.00173 0.94664 1.20239 0.95421 0.90825 1.02509 1.21691 0.95302 1.03098 0.95337 1.21651 1.02960 0.93172 0.97601 1.20391 0.93211 0.99905 0.94495 1.22462 0.90117 0.92796 0.91373 0.88877 1.86422 1.54368 1.55125 1.41633 1.21882 0.93142 0.91677 0.94516 0.93149 0.94645 0.93438 0.92151 0.92020 0.74503 0.89841 0.89563 0.91007 0.88768 0.87660 0.91703 0.87616 0.88431 0.75915 0.90343 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.34 13.97 21.65 0.30 -60.03 16 2 C -0.04 -2.18 5.24 84.86 0.44 -1.73 16 3 Si 0.94 47.04 24.34 68.60 1.67 48.71 16 4 H -0.29 -13.94 6.70 99.48 0.67 -13.27 16 5 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 6 H -0.26 -12.04 6.45 99.48 0.64 -11.40 16 7 C -0.24 -12.91 10.04 84.03 0.84 -12.07 16 8 H 0.06 3.52 8.05 -2.91 -0.02 3.50 16 9 N -0.61 -27.32 2.72 -699.12 -1.90 -29.22 16 10 C 0.13 5.44 4.19 86.36 0.36 5.80 16 11 C -0.13 -4.68 5.51 30.67 0.17 -4.51 16 12 C 0.17 4.89 2.20 45.02 0.10 4.99 16 13 H 0.10 2.95 7.58 -2.39 -0.02 2.94 16 14 N -0.69 -17.96 5.05 -445.61 -2.25 -20.21 16 15 C 0.61 16.74 7.78 86.69 0.67 17.41 16 16 O -0.54 -17.29 15.60 -3.96 -0.06 -17.36 16 17 C -0.09 -2.32 7.28 24.03 0.17 -2.15 16 18 O 0.09 2.25 11.10 59.51 0.66 2.91 16 19 N -0.35 -8.61 12.03 -50.85 -0.61 -9.22 16 20 C 0.02 0.41 7.22 43.77 0.32 0.72 16 21 C -0.12 -2.66 6.03 -19.92 -0.12 -2.78 16 22 C -0.05 -0.91 5.59 29.86 0.17 -0.75 16 23 C -0.12 -1.19 5.88 30.79 0.18 -1.01 16 24 C -0.12 -0.97 5.83 30.75 0.18 -0.79 16 25 C -0.04 -0.48 6.32 29.98 0.19 -0.29 16 26 C 0.09 2.52 3.38 30.68 0.10 2.62 16 27 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 28 O -0.57 -16.23 12.09 -148.98 -1.80 -18.03 16 29 C 0.11 3.80 6.16 86.37 0.53 4.33 16 30 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 31 H 0.04 1.48 6.98 -2.39 -0.02 1.47 16 32 H 0.05 2.31 4.49 -2.38 -0.01 2.30 16 33 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.06 2.46 7.61 -2.38 -0.02 2.44 16 35 H 0.42 9.70 8.10 -92.70 -0.75 8.95 16 36 H 0.08 1.63 7.78 -2.38 -0.02 1.61 16 37 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 0.70 8.11 -2.39 -0.02 0.68 16 39 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 41 H 0.06 0.63 8.10 -2.39 -0.02 0.62 16 42 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 43 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.39 8.72 9.08 -74.06 -0.67 8.05 16 45 H 0.08 2.53 7.93 -2.39 -0.02 2.51 16 46 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -72.64 363.04 -0.17 -72.81 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -0.50 Total: 19.83 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 4.32 Total: 9.80 kcal Atomic # 7 Polarization: -114.22 SS G_CDS: -4.46 Total: -118.68 kcal Atomic # 8 Polarization: -31.27 SS G_CDS: -1.20 Total: -32.47 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.67 Total: 48.71 kcal Total: -72.64 -0.17 -72.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090430784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.123 kcal (2) G-P(sol) polarization free energy of solvation -72.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds