Wall clock time and date at job start Tue Mar 31 2020 18:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 119.99615 * 2 1 4 4 H 1.48502 * 109.47244 * 269.99307 * 3 2 1 5 5 H 1.48495 * 109.47382 * 30.00177 * 3 2 1 6 6 H 1.48510 * 109.47150 * 150.00127 * 3 2 1 7 7 C 1.38808 * 120.00504 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00517 * 197.36118 * 7 2 1 9 9 N 1.36941 * 119.99943 * 17.35566 * 7 2 1 10 10 C 1.46924 * 120.63447 * 207.68271 * 9 7 2 11 11 C 1.53191 * 108.77346 * 233.61193 * 10 9 7 12 12 C 1.53047 * 109.31526 * 305.36428 * 11 10 9 13 13 H 1.09001 * 109.45403 * 301.34744 * 12 11 10 14 14 N 1.46498 * 109.44960 * 181.38052 * 12 11 10 15 15 C 1.34776 * 119.99867 * 84.93742 * 14 12 11 16 16 O 1.21497 * 120.00052 * 0.02562 * 15 14 12 17 17 C 1.48333 * 119.99934 * 179.97438 * 15 14 12 18 18 N 1.31495 * 127.15491 * 359.69156 * 17 15 14 19 19 O 1.21425 * 111.52357 * 179.80198 * 18 17 15 20 20 C 1.33188 * 111.57516 * 0.42824 * 19 18 17 21 21 C 1.35381 * 106.63268 * 359.79059 * 20 19 18 22 22 C 1.50060 * 124.94074 * 179.82633 * 21 20 19 23 23 C 1.53547 * 108.23011 * 343.88322 * 22 21 20 24 24 C 1.53099 * 109.51824 * 49.19383 * 23 22 21 25 25 C 1.50601 * 129.60883 * 179.82226 * 20 19 18 26 26 C 1.53040 * 109.53541 * 61.36587 * 12 11 10 27 27 H 1.09000 * 109.49212 * 178.65423 * 26 12 11 28 28 O 1.42895 * 109.49830 * 58.58965 * 26 12 11 29 29 C 1.46934 * 120.62678 * 27.68510 * 9 7 2 30 30 H 0.96996 * 120.00511 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.58372 * 113.82754 * 10 9 7 32 32 H 1.08998 * 109.58782 * 353.39522 * 10 9 7 33 33 H 1.09001 * 109.49770 * 185.41731 * 11 10 9 34 34 H 1.08999 * 109.49915 * 65.31775 * 11 10 9 35 35 H 0.96991 * 120.00456 * 264.93686 * 14 12 11 36 36 H 1.09004 * 109.71165 * 103.56238 * 22 21 20 37 37 H 1.08998 * 109.71431 * 224.15608 * 22 21 20 38 38 H 1.09004 * 109.46521 * 169.21250 * 23 22 21 39 39 H 1.09005 * 109.46051 * 289.18720 * 23 22 21 40 40 H 1.09004 * 109.42801 * 50.23548 * 24 23 22 41 41 H 1.08996 * 109.43326 * 170.07294 * 24 23 22 42 42 H 1.08991 * 109.69724 * 43.52814 * 25 20 19 43 43 H 1.09002 * 109.69283 * 282.93915 * 25 20 19 44 44 H 0.96700 * 114.00041 * 179.97438 * 28 26 12 45 45 H 1.09000 * 109.58568 * 6.60638 * 29 9 7 46 46 H 1.08996 * 109.58478 * 246.17384 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2232 0.2796 9 7 1.3724 -2.3612 -0.3527 10 6 1.8195 -3.6546 0.1820 11 6 2.0748 -4.6101 -0.9879 12 6 0.8192 -4.6903 -1.8593 13 1 -0.0199 -5.0368 -1.2560 14 7 1.0489 -5.6286 -2.9607 15 6 0.8488 -6.9483 -2.7744 16 8 0.4775 -7.3598 -1.6932 17 6 1.0809 -7.8983 -3.8897 18 7 1.4740 -7.6089 -5.1107 19 8 1.5767 -8.6074 -5.7940 20 6 1.2526 -9.7039 -5.1110 21 6 0.9199 -9.2986 -3.8628 22 6 0.4830 -10.2079 -2.7518 23 6 0.0928 -11.5610 -3.3639 24 6 1.2008 -12.0336 -4.3087 25 6 1.2326 -11.1421 -5.5570 26 6 0.5012 -3.3053 -2.4274 27 1 -0.3792 -3.3679 -3.0670 28 8 1.6137 -2.8363 -3.1917 29 6 0.2279 -2.3350 -1.2738 30 1 -0.4851 0.8400 0.0004 31 1 1.0471 -4.0687 0.8300 32 1 2.7401 -3.5171 0.7490 33 1 2.3141 -5.6012 -0.6026 34 1 2.9086 -4.2400 -1.5845 35 1 1.3450 -5.3001 -3.8239 36 1 1.3023 -10.3463 -2.0463 37 1 -0.3752 -9.7748 -2.2382 38 1 -0.0435 -12.2937 -2.5685 39 1 -0.8378 -11.4526 -3.9211 40 1 2.1620 -11.9762 -3.7978 41 1 1.0096 -13.0651 -4.6046 42 1 2.1276 -11.3583 -6.1403 43 1 0.3454 -11.3266 -6.1628 44 1 1.4815 -1.9619 -3.5830 45 1 0.0986 -1.3268 -1.6673 46 1 -0.6742 -2.6416 -0.7444 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090597363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:40 Heat of formation + Delta-G solvation = -33.313811 kcal Electronic energy + Delta-G solvation = -29539.956746 eV Core-core repulsion = 25432.058416 eV Total energy + Delta-G solvation = -4107.898329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.23452 -41.22515 -39.57324 -38.56700 -36.56006 -35.89785 -35.05279 -33.89688 -32.00374 -31.50853 -31.02504 -30.73164 -27.42727 -25.94070 -25.00705 -24.03816 -23.75503 -23.36888 -21.69342 -21.13925 -20.44878 -19.24926 -18.96292 -18.66200 -17.70603 -17.58114 -17.16084 -16.82873 -16.14638 -16.05231 -15.76349 -15.48955 -15.40121 -15.08452 -14.86828 -14.78313 -14.56659 -14.27037 -14.18893 -13.87288 -13.72212 -13.26246 -13.19272 -12.86381 -12.69639 -12.51416 -12.40265 -12.32101 -12.10986 -11.90194 -11.88149 -11.85111 -11.68643 -11.52492 -11.32474 -11.29194 -10.83126 -10.61277 -10.22296 -10.13240 -8.72046 -7.90288 -5.34300 -0.04337 0.59696 1.46879 1.48567 1.57347 1.70270 1.93649 1.95891 2.49766 2.79470 3.20627 3.32167 3.46274 3.61097 3.63957 3.76611 3.91080 3.93334 4.00374 4.08957 4.23741 4.26312 4.31020 4.36716 4.48793 4.53641 4.58708 4.62291 4.77453 4.85949 4.89252 4.94173 5.00902 5.01695 5.11414 5.17657 5.20072 5.27921 5.34651 5.37140 5.44752 5.50772 5.62787 6.22965 6.34494 6.80787 6.86082 6.97138 7.11562 7.79084 8.32267 9.16478 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031471 B = 0.002444 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.496157 B =11454.570271 C =11877.537484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.968 3.032 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.274 1.274 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.598 5.598 10 C 0.147 3.853 11 C -0.121 4.121 12 C 0.168 3.832 13 H 0.083 0.917 14 N -0.695 5.695 15 C 0.593 3.407 16 O -0.549 6.549 17 C -0.040 4.040 18 N -0.354 5.354 19 O 0.135 5.865 20 C -0.021 4.021 21 C -0.172 4.172 22 C -0.046 4.046 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.034 4.034 26 C 0.089 3.911 27 H 0.067 0.933 28 O -0.563 6.563 29 C 0.152 3.848 30 H 0.251 0.749 31 H 0.017 0.983 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.413 0.587 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.112 0.888 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.387 0.613 45 H 0.075 0.925 46 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 -25.319 -14.073 28.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.796 3.204 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.385 4.385 8 H 0.080 0.920 9 N -0.321 5.321 10 C 0.021 3.979 11 C -0.161 4.161 12 C 0.064 3.936 13 H 0.101 0.899 14 N -0.345 5.345 15 C 0.378 3.622 16 O -0.426 6.426 17 C -0.197 4.197 18 N -0.055 5.055 19 O 0.060 5.940 20 C -0.085 4.085 21 C -0.178 4.178 22 C -0.084 4.084 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.072 4.072 26 C 0.028 3.972 27 H 0.085 0.915 28 O -0.370 6.370 29 C 0.025 3.975 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.249 0.751 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.236 0.764 45 H 0.093 0.907 46 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 0.968 -24.817 -13.643 28.337 hybrid contribution -0.119 1.822 0.443 1.879 sum 0.849 -22.995 -13.201 26.528 Atomic orbital electron populations 1.70153 1.06459 1.25966 1.55540 1.25700 0.96018 1.01183 1.01269 0.85264 0.77882 0.79556 0.77679 1.20834 1.22297 1.19916 1.19427 0.92792 0.85844 1.40442 0.92033 1.44106 1.35650 1.01981 1.50367 1.20957 0.97701 0.85809 0.93482 1.22101 0.97541 0.98887 0.97538 1.20879 0.98601 0.86727 0.87394 0.89864 1.45945 1.66982 1.05364 1.16218 1.17173 0.77374 0.81862 0.85780 1.90759 1.47797 1.78212 1.25826 1.23011 1.07744 0.95544 0.93361 1.74570 1.17668 1.08902 1.04375 1.84647 1.61997 1.11192 1.36189 1.24961 0.99910 0.93071 0.90606 1.20978 1.06676 0.91421 0.98713 1.20053 1.01187 0.93751 0.93415 1.21731 0.99379 0.94459 1.00068 1.21700 0.99296 1.00142 0.94193 1.20633 1.06582 0.80050 0.99895 1.22542 0.88786 0.92699 0.93181 0.91549 1.86332 1.41649 1.39298 1.69696 1.21312 0.88527 0.98328 0.89328 0.93939 0.96514 0.92310 0.92167 0.91973 0.75096 0.90527 0.91391 0.89188 0.90916 0.91441 0.86945 0.86428 0.86332 0.76379 0.90679 0.97342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.00 11.19 21.65 0.24 -53.76 16 2 C -0.05 -2.55 4.91 84.86 0.42 -2.13 16 3 Si 0.97 44.51 29.59 68.60 2.03 46.54 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.25 -14.01 9.59 84.03 0.81 -13.21 16 8 H 0.06 3.37 7.89 -2.91 -0.02 3.35 16 9 N -0.60 -30.22 2.94 -699.10 -2.05 -32.27 16 10 C 0.15 6.52 6.52 86.36 0.56 7.09 16 11 C -0.12 -4.73 5.51 30.67 0.17 -4.56 16 12 C 0.17 6.25 2.20 45.02 0.10 6.35 16 13 H 0.08 3.30 7.58 -2.39 -0.02 3.28 16 14 N -0.69 -23.21 5.05 -444.80 -2.25 -25.46 16 15 C 0.59 20.24 7.81 86.93 0.68 20.92 16 16 O -0.55 -21.14 15.75 -3.71 -0.06 -21.20 16 17 C -0.04 -1.18 7.19 42.56 0.31 -0.87 16 18 N -0.35 -9.71 11.89 -48.95 -0.58 -10.30 16 19 O 0.13 2.94 11.18 78.71 0.88 3.82 16 20 C -0.02 -0.36 7.38 24.99 0.18 -0.17 16 21 C -0.17 -3.98 6.04 -20.05 -0.12 -4.10 16 22 C -0.05 -0.90 5.66 29.83 0.17 -0.73 16 23 C -0.12 -1.21 5.92 30.81 0.18 -1.03 16 24 C -0.12 -0.68 5.88 30.77 0.18 -0.50 16 25 C -0.03 -0.22 6.31 29.96 0.19 -0.03 16 26 C 0.09 3.34 3.38 30.67 0.10 3.45 16 27 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 28 O -0.56 -20.43 12.09 -148.98 -1.80 -22.23 16 29 C 0.15 7.13 4.95 86.36 0.43 7.55 16 30 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 2.56 7.93 -2.39 -0.02 2.54 16 33 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.06 2.56 7.61 -2.39 -0.02 2.54 16 35 H 0.41 13.09 8.03 -92.71 -0.74 12.34 16 36 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.07 1.60 7.83 -2.39 -0.02 1.58 16 38 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.07 0.70 8.12 -2.38 -0.02 0.68 16 40 H 0.07 0.50 8.12 -2.38 -0.02 0.48 16 41 H 0.11 0.06 8.14 -2.39 -0.02 0.05 16 42 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 44 H 0.39 12.12 9.08 -74.06 -0.67 11.45 16 45 H 0.07 3.86 6.04 -2.39 -0.01 3.84 16 46 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -69.89 370.04 0.37 -69.52 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.39 Total: 27.34 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 4.35 Total: 18.02 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -4.64 Total: -121.79 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -0.98 Total: -39.62 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -69.89 0.37 -69.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090597363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.201 kcal (2) G-P(sol) polarization free energy of solvation -69.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds