Wall clock time and date at job start Tue Mar 31 2020 19:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00467 * 2 1 4 4 H 1.48497 * 109.47441 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47001 * 299.99904 * 3 2 1 6 6 H 1.48499 * 109.47209 * 59.99747 * 3 2 1 7 7 C 1.38817 * 119.99557 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99679 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.47067 * 136.05300 * 359.62314 * 9 7 2 11 11 C 1.53497 * 87.98534 * 153.14183 * 10 9 7 12 12 O 1.42906 * 114.20386 * 272.47892 * 11 10 9 13 13 C 1.42900 * 113.99862 * 243.59742 * 12 11 10 14 14 C 1.53039 * 109.45839 * 270.02444 * 13 12 11 15 15 C 1.53190 * 109.31012 * 178.60146 * 14 13 12 16 16 N 1.46925 * 108.76533 * 54.66060 * 15 14 13 17 17 C 1.34779 * 120.63294 * 126.40600 * 16 15 14 18 18 O 1.21281 * 120.00021 * 179.97438 * 17 16 15 19 19 C 1.50693 * 120.00028 * 359.97438 * 17 16 15 20 20 C 1.50694 * 109.47433 * 180.02562 * 19 17 16 21 21 C 1.41383 * 128.01101 * 269.68440 * 20 19 17 22 22 N 1.30171 * 106.39507 * 179.89510 * 21 20 19 23 23 O 1.20920 * 111.60956 * 0.38409 * 22 21 20 24 24 C 1.34046 * 111.56625 * 359.75041 * 23 22 21 25 25 C 1.46932 * 118.73669 * 306.37913 * 16 15 14 26 26 C 1.53040 * 109.45623 * 149.97332 * 13 12 11 27 27 C 1.47066 * 136.06113 * 179.97438 * 9 7 2 28 28 H 0.96999 * 119.99537 * 0.02562 * 1 2 3 29 29 H 1.09007 * 113.46858 * 267.91666 * 10 9 7 30 30 H 1.08993 * 113.47208 * 38.36002 * 10 9 7 31 31 H 1.08994 * 114.39005 * 139.66791 * 11 10 9 32 32 H 1.08994 * 109.46244 * 30.00051 * 13 12 11 33 33 H 1.09001 * 109.50197 * 298.56807 * 14 13 12 34 34 H 1.09001 * 109.49527 * 58.66561 * 14 13 12 35 35 H 1.09001 * 109.60283 * 294.86790 * 15 14 13 36 36 H 1.09006 * 109.70483 * 174.50833 * 15 14 13 37 37 H 1.09000 * 109.47126 * 300.00440 * 19 17 16 38 38 H 1.08999 * 109.47432 * 60.00035 * 19 17 16 39 39 H 1.08000 * 126.79666 * 0.02562 * 21 20 19 40 40 H 1.07993 * 126.78005 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.58484 * 293.82367 * 25 16 15 42 42 H 1.08999 * 109.69890 * 173.46784 * 25 16 15 43 43 H 1.08997 * 109.49989 * 301.33333 * 26 13 12 44 44 H 1.09000 * 109.49954 * 61.43508 * 26 13 12 45 45 H 1.09005 * 113.46156 * 321.64040 * 27 9 7 46 46 H 1.08994 * 113.46837 * 92.01680 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0901 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.0878 -2.7948 0.0068 11 6 0.3387 -4.0929 -0.6925 12 8 0.3864 -4.0022 -2.1179 13 6 -0.5445 -4.8560 -2.7860 14 6 0.1114 -6.2118 -3.0577 15 6 -0.9005 -7.1359 -3.7425 16 7 -1.4169 -6.4643 -4.9430 17 6 -1.3690 -7.0730 -6.1446 18 8 -1.7990 -6.5082 -7.1280 19 6 -0.7811 -8.4551 -6.2662 20 6 -0.8462 -8.9041 -7.7032 21 6 -1.8862 -9.6125 -8.3478 22 7 -1.5079 -9.7778 -9.5823 23 8 -0.4171 -9.2958 -9.7822 24 6 0.0808 -8.7275 -8.6750 25 6 -1.9871 -5.1169 -4.8085 26 6 -0.9632 -4.2155 -4.1114 27 6 1.6797 -3.8155 0.0005 28 1 -0.4849 0.8401 -0.0004 29 1 -0.4897 -2.9528 1.0077 30 1 -0.7251 -2.1596 -0.6083 31 1 -0.1731 -4.9861 -0.3346 32 1 -1.4236 -4.9973 -2.1574 33 1 0.9761 -6.0741 -3.7069 34 1 0.4305 -6.6569 -2.1153 35 1 -1.7233 -7.3473 -3.0596 36 1 -0.4129 -8.0684 -4.0268 37 1 0.2582 -8.4381 -5.9379 38 1 -1.3476 -9.1471 -5.6430 39 1 -2.8120 -9.9480 -7.9043 40 1 1.0328 -8.2271 -8.5772 41 1 -2.8985 -5.1636 -4.2125 42 1 -2.2161 -4.7147 -5.7954 43 1 -1.4089 -3.2396 -3.9191 44 1 -0.0882 -4.0968 -4.7506 45 1 2.5452 -4.0479 -0.6200 46 1 1.7501 -4.2453 0.9997 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093564032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:05 Heat of formation + Delta-G solvation = 53.187025 kcal Electronic energy + Delta-G solvation = -28642.646950 eV Core-core repulsion = 24538.499579 eV Total energy + Delta-G solvation = -4104.147372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.21869 -40.49493 -38.88676 -37.49903 -35.40619 -34.95508 -32.63790 -32.19597 -31.65526 -31.24782 -29.07595 -27.54923 -24.97506 -24.59778 -23.67389 -23.28206 -22.99579 -22.16998 -20.86052 -19.53424 -19.19309 -18.16159 -17.96376 -17.44315 -16.85696 -16.19049 -16.04872 -15.85338 -15.20875 -14.96221 -14.54477 -14.47084 -14.17301 -13.93088 -13.77190 -13.61646 -13.42434 -13.29139 -12.87288 -12.61054 -12.53155 -12.25653 -12.06601 -11.80894 -11.57974 -11.40211 -11.18007 -11.00656 -10.84999 -10.67684 -10.55115 -10.36397 -10.26327 -10.13229 -9.81482 -9.66505 -9.42332 -8.95395 -8.81567 -8.68163 -6.84392 -5.72715 -3.04065 1.19625 1.89688 2.32466 2.72557 2.97007 3.41177 3.46052 3.48855 3.91399 3.94098 4.20751 4.31418 4.40745 4.48551 4.52571 4.75362 4.77226 4.84166 4.93930 5.08335 5.08805 5.23259 5.23668 5.29587 5.34206 5.38443 5.39392 5.47980 5.50482 5.64022 5.66677 5.76170 5.81558 5.88694 6.05834 6.23002 6.34461 6.37483 6.54407 6.55729 6.97535 7.09110 7.23887 7.56913 7.88005 7.91987 7.94321 8.04583 9.07505 9.74475 10.67433 11.45179 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.002039 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.855979 B =13732.011575 C =14041.137438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.211 4.211 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.136 3.864 11 C 0.032 3.968 12 O -0.338 6.338 13 C 0.090 3.910 14 C -0.158 4.158 15 C 0.108 3.892 16 N -0.611 5.611 17 C 0.515 3.485 18 O -0.534 6.534 19 C -0.063 4.063 20 C -0.187 4.187 21 C 0.004 3.996 22 N -0.367 5.367 23 O 0.097 5.903 24 C -0.042 4.042 25 C 0.115 3.885 26 C -0.131 4.131 27 C 0.113 3.887 28 H 0.252 0.748 29 H 0.031 0.969 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.188 0.812 40 H 0.216 0.784 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.222 -22.045 -10.233 24.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.743 3.257 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.338 4.338 8 H 0.098 0.902 9 N -0.328 5.328 10 C 0.009 3.991 11 C -0.027 4.027 12 O -0.256 6.256 13 C 0.031 3.969 14 C -0.196 4.196 15 C -0.015 4.015 16 N -0.346 5.346 17 C 0.303 3.697 18 O -0.411 6.411 19 C -0.104 4.104 20 C -0.192 4.192 21 C -0.175 4.175 22 N -0.070 5.070 23 O 0.033 5.967 24 C -0.124 4.124 25 C -0.007 4.007 26 C -0.169 4.169 27 C -0.013 4.013 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.205 0.795 40 H 0.232 0.768 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.064 0.936 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.820 -21.821 -11.958 25.174 hybrid contribution 0.466 1.163 1.390 1.871 sum -3.354 -20.658 -10.568 23.446 Atomic orbital electron populations 1.69835 1.05002 1.25054 1.56935 1.24774 0.95698 0.97456 1.02699 0.86039 0.78719 0.83761 0.77218 1.20475 1.21702 1.21833 1.18945 0.90077 0.81428 1.43382 0.90158 1.45391 1.02431 0.99161 1.85815 1.22576 0.89598 0.90644 0.96233 1.23951 0.99673 0.98081 0.81034 1.88061 1.57821 1.62304 1.17447 1.21991 0.91927 0.89226 0.93711 1.22495 0.99060 0.96473 1.01597 1.21799 0.97403 0.95701 0.86562 1.48183 1.61105 1.17710 1.07558 1.20471 0.79028 0.87590 0.82612 1.90731 1.47462 1.66340 1.36542 1.19933 1.03889 0.94597 0.91946 1.20737 0.95603 1.05240 0.97576 1.24899 1.01647 1.00878 0.90084 1.73860 0.97172 1.16962 1.19042 1.84817 1.24424 1.53255 1.34243 1.25801 1.01684 0.99760 0.85127 1.21638 0.95613 0.80975 1.02437 1.21967 0.99713 0.99502 0.95725 1.22646 0.95256 0.87243 0.96190 0.93828 0.95110 0.90503 0.92057 0.92205 0.90607 0.90189 0.90850 0.89510 0.87240 0.87307 0.79500 0.76776 0.91172 0.88547 0.89396 0.90770 0.93643 0.94021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.75 11.51 55.49 0.64 -27.12 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.21 -6.06 10.75 -15.06 -0.16 -6.22 16 8 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 9 N -0.60 -15.74 3.78 -184.81 -0.70 -16.44 16 10 C 0.14 3.17 7.24 -8.51 -0.06 3.11 16 11 C 0.03 0.57 4.50 -26.23 -0.12 0.46 16 12 O -0.34 -6.19 10.04 -35.23 -0.35 -6.54 16 13 C 0.09 1.16 2.46 -26.69 -0.07 1.09 16 14 C -0.16 -1.48 5.69 -26.61 -0.15 -1.63 16 15 C 0.11 0.72 6.34 -3.71 -0.02 0.69 16 16 N -0.61 -5.58 2.97 -172.76 -0.51 -6.10 16 17 C 0.52 5.12 7.69 -10.99 -0.08 5.04 16 18 O -0.53 -7.61 15.45 5.56 0.09 -7.53 16 19 C -0.06 -0.38 4.63 -29.04 -0.13 -0.52 16 20 C -0.19 -1.52 4.82 -104.42 -0.50 -2.02 16 21 C 0.00 0.04 12.16 -17.06 -0.21 -0.17 16 22 N -0.37 -4.06 12.07 30.35 0.37 -3.69 16 23 O 0.10 0.96 11.20 17.16 0.19 1.15 16 24 C -0.04 -0.32 12.27 29.74 0.36 0.05 16 25 C 0.12 1.21 6.43 -3.71 -0.02 1.19 16 26 C -0.13 -1.65 5.73 -26.61 -0.15 -1.80 16 27 C 0.11 2.30 8.52 -8.52 -0.07 2.23 16 28 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 2.03 7.12 -51.93 -0.37 1.66 16 31 H 0.06 0.89 7.76 -51.93 -0.40 0.48 16 32 H 0.06 0.72 7.71 -51.93 -0.40 0.32 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.34 5.93 -51.93 -0.31 0.03 16 37 H 0.11 0.42 7.69 -51.93 -0.40 0.02 16 38 H 0.11 0.41 7.94 -51.93 -0.41 -0.01 16 39 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.22 0.85 8.06 -52.49 -0.42 0.42 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.10 1.14 7.01 -51.93 -0.36 0.77 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -37.16 379.32 -7.94 -45.10 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -6.85 Total: -3.17 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.49 Total: 1.12 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.21 Total: -53.35 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.08 Total: -12.92 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.16 -7.94 -45.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093564032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.287 kcal (2) G-P(sol) polarization free energy of solvation -37.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds