Wall clock time and date at job start Tue Mar 31 2020 18:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00213 * 2 1 4 4 H 1.48496 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46981 * 299.99974 * 3 2 1 6 6 H 1.48504 * 109.47322 * 59.99541 * 3 2 1 7 7 C 1.38813 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00142 * 160.51736 * 7 2 1 9 9 N 1.36941 * 120.00090 * 340.51987 * 7 2 1 10 10 C 1.46502 * 119.99931 * 319.57822 * 9 7 2 11 11 C 1.52993 * 109.47076 * 264.45091 * 10 9 7 12 12 O 1.42892 * 109.47613 * 65.00194 * 11 10 9 13 13 C 1.46502 * 119.99819 * 139.58014 * 9 7 2 14 14 C 1.53039 * 109.46176 * 299.99988 * 13 9 7 15 15 C 1.53189 * 109.31262 * 181.38683 * 14 13 9 16 16 N 1.46921 * 108.89338 * 305.29140 * 15 14 13 17 17 C 1.34784 * 120.63375 * 233.68246 * 16 15 14 18 18 O 1.21573 * 119.99600 * 358.31073 * 17 16 15 19 19 C 1.47617 * 120.00052 * 178.31075 * 17 16 15 20 20 C 1.40285 * 120.49464 * 212.45222 * 19 17 16 21 21 C 1.37951 * 118.35586 * 180.02562 * 20 19 17 22 22 C 1.39169 * 119.26394 * 359.97438 * 21 20 19 23 23 O 1.35502 * 119.52585 * 179.97438 * 22 21 20 24 24 N 1.32407 * 120.94934 * 0.02562 * 22 21 20 25 25 C 1.31669 * 121.80046 * 359.69554 * 24 22 21 26 26 C 1.47208 * 118.55752 * 53.54037 * 16 15 14 27 27 C 1.53040 * 109.45947 * 60.06886 * 13 9 7 28 28 H 0.97000 * 119.99767 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46964 * 24.45288 * 10 9 7 30 30 H 1.09003 * 109.46528 * 144.45145 * 10 9 7 31 31 H 1.09004 * 109.47256 * 185.00442 * 11 10 9 32 32 H 1.09005 * 109.46988 * 305.00040 * 11 10 9 33 33 H 0.96697 * 114.00527 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.45726 * 180.02562 * 13 9 7 35 35 H 1.09006 * 109.49926 * 61.43391 * 14 13 9 36 36 H 1.09003 * 109.52221 * 301.35809 * 14 13 9 37 37 H 1.08994 * 109.58888 * 65.15128 * 15 14 13 38 38 H 1.09005 * 109.58649 * 185.43863 * 15 14 13 39 39 H 1.07996 * 120.82042 * 359.97438 * 20 19 17 40 40 H 1.08004 * 120.37100 * 180.02562 * 21 20 19 41 41 H 0.96697 * 114.00079 * 90.00561 * 23 22 21 42 42 H 1.07988 * 119.69202 * 180.29457 * 25 24 22 43 43 H 1.09000 * 109.53814 * 186.67588 * 26 16 15 44 44 H 1.09002 * 109.67723 * 66.36526 * 26 16 15 45 45 H 1.09000 * 109.49821 * 298.56574 * 27 13 9 46 46 H 1.09001 * 109.49857 * 58.66128 * 27 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0438 -1.2292 -0.3114 9 7 1.3843 -2.3540 0.3965 10 6 0.4745 -2.3357 1.5447 11 6 1.2330 -2.7620 2.8032 12 8 2.2400 -1.7937 3.1034 13 6 1.6244 -3.6045 -0.3280 14 6 1.2007 -3.4367 -1.7890 15 6 1.4209 -4.7564 -2.5350 16 7 2.8182 -5.1749 -2.3592 17 6 3.5910 -5.4545 -3.4275 18 8 3.1245 -5.3912 -4.5484 19 6 5.0037 -5.8377 -3.2366 20 6 5.9709 -5.4902 -4.1915 21 6 7.2779 -5.8712 -3.9688 22 6 7.5923 -6.5812 -2.8139 23 8 8.8743 -6.9585 -2.5901 24 7 6.6564 -6.8942 -1.9311 25 6 5.3980 -6.5461 -2.1010 26 6 3.3551 -5.2787 -0.9925 27 6 3.1132 -3.9531 -0.2636 28 1 -0.4850 0.8401 -0.0004 29 1 0.0817 -1.3281 1.6810 30 1 -0.3499 -3.0260 1.3660 31 1 0.5376 -2.8344 3.6395 32 1 1.7005 -3.7321 2.6345 33 1 2.7618 -2.0001 3.8909 34 1 1.0439 -4.4060 0.1288 35 1 1.7983 -2.6522 -2.2533 36 1 0.1460 -3.1651 -1.8335 37 1 0.7570 -5.5202 -2.1302 38 1 1.2123 -4.6158 -3.5957 39 1 5.6988 -4.9389 -5.0793 40 1 8.0489 -5.6205 -4.6824 41 1 9.3955 -6.3088 -2.0988 42 1 4.6633 -6.8153 -1.3567 43 1 4.4251 -5.4820 -1.0356 44 1 2.8510 -6.0855 -0.4604 45 1 3.6927 -3.1637 -0.7423 46 1 3.4196 -4.0495 0.7780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098553064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:20 Heat of formation + Delta-G solvation = -35.594708 kcal Electronic energy + Delta-G solvation = -29898.882345 eV Core-core repulsion = 25790.885108 eV Total energy + Delta-G solvation = -4107.997236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.16152 -39.64109 -37.68729 -37.20330 -36.22225 -34.70617 -32.84889 -32.35007 -31.49888 -30.40393 -29.84808 -27.73190 -25.48433 -24.30394 -24.09750 -23.09214 -22.49099 -20.95276 -20.13181 -19.28127 -19.08313 -17.88794 -16.93545 -16.64139 -16.39811 -16.28055 -15.66932 -15.02358 -15.00295 -14.69449 -14.45310 -14.29083 -13.80059 -13.60862 -13.47857 -13.36489 -13.20127 -12.98513 -12.68982 -12.57662 -12.16737 -12.11354 -11.72497 -11.46745 -11.21111 -10.96735 -10.82459 -10.69133 -10.51343 -10.31006 -10.20147 -9.99961 -9.87253 -9.84459 -9.59376 -9.49868 -9.17014 -9.12336 -8.47540 -8.37841 -6.49241 -5.73862 -3.30973 0.35045 0.87730 2.63833 2.95925 3.28198 3.41055 3.49228 3.50364 3.52074 4.27670 4.34096 4.53432 4.54483 4.69140 4.95537 5.02136 5.10888 5.21659 5.26033 5.38146 5.42166 5.49186 5.58238 5.64317 5.75391 5.82453 5.92722 5.99428 6.04241 6.05900 6.09626 6.22712 6.34440 6.42249 6.56254 6.67379 6.76875 6.79234 7.08983 7.10214 7.21262 7.46136 7.50692 7.60510 7.89574 8.15832 8.43048 8.63048 9.24236 9.86464 10.44073 11.29063 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012980 B = 0.003300 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.631967 B = 8481.899775 C = 8597.448595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.019 3.981 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.236 4.236 8 H 0.054 0.946 9 N -0.571 5.571 10 C 0.149 3.851 11 C 0.058 3.942 12 O -0.545 6.545 13 C 0.177 3.823 14 C -0.133 4.133 15 C 0.112 3.888 16 N -0.593 5.593 17 C 0.563 3.437 18 O -0.541 6.541 19 C -0.187 4.187 20 C -0.005 4.005 21 C -0.191 4.191 22 C 0.326 3.674 23 O -0.482 6.482 24 N -0.506 5.506 25 C 0.144 3.856 26 C 0.077 3.923 27 C -0.139 4.139 28 H 0.251 0.749 29 H 0.096 0.904 30 H 0.037 0.963 31 H 0.019 0.981 32 H 0.022 0.978 33 H 0.350 0.650 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.404 0.596 42 H 0.184 0.816 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.139 -12.696 -1.078 16.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.181 4.181 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.366 4.366 8 H 0.071 0.929 9 N -0.290 5.290 10 C 0.023 3.977 11 C -0.022 4.022 12 O -0.346 6.346 13 C 0.069 3.931 14 C -0.173 4.173 15 C -0.010 4.010 16 N -0.325 5.325 17 C 0.350 3.650 18 O -0.419 6.419 19 C -0.192 4.192 20 C -0.031 4.031 21 C -0.212 4.212 22 C 0.148 3.852 23 O -0.290 6.290 24 N -0.224 5.224 25 C -0.014 4.014 26 C -0.045 4.045 27 C -0.179 4.179 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.055 0.945 31 H 0.037 0.963 32 H 0.041 0.959 33 H 0.192 0.808 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.263 0.737 42 H 0.200 0.800 43 H 0.113 0.887 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.631 -13.183 -1.795 16.425 hybrid contribution 0.661 1.501 0.283 1.664 sum 10.292 -11.683 -1.513 15.643 Atomic orbital electron populations 1.69996 1.05512 1.25393 1.52638 1.25126 0.94923 0.98521 0.99514 0.86366 0.79790 0.84379 0.76927 1.20335 1.22081 1.21604 1.18729 0.92705 0.84901 1.40270 0.92889 1.43671 1.52317 1.04162 1.28828 1.20927 0.90140 1.02916 0.83760 1.23112 0.89883 0.90535 0.98658 1.86844 1.50320 1.49135 1.48287 1.20318 0.92116 0.89618 0.91027 1.22300 1.02729 0.94902 0.97335 1.21825 0.79632 0.97289 1.02276 1.48103 1.12872 1.65606 1.05936 1.17898 0.84862 0.77565 0.84637 1.90777 1.74181 1.53548 1.23442 1.21047 0.95507 1.04923 0.97761 1.21589 0.90890 0.93432 0.97230 1.22077 0.98024 1.01108 1.00025 1.19420 0.85450 0.90375 0.89957 1.84712 1.18039 1.48343 1.77923 1.67251 1.02032 1.21176 1.31978 1.23421 0.91903 0.91779 0.94259 1.22767 0.99889 0.99982 0.81893 1.22366 1.00980 0.94921 0.99658 0.93867 0.88582 0.94515 0.96268 0.95929 0.80764 0.93533 0.90999 0.90742 0.91849 0.89550 0.83209 0.83461 0.73717 0.79965 0.88677 0.90928 0.91196 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.10 11.65 55.49 0.65 -24.45 16 2 C 0.02 0.51 4.92 -17.43 -0.09 0.43 16 3 Si 0.90 21.96 29.60 -169.99 -5.03 16.93 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.12 7.98 -15.06 -0.12 -6.24 16 8 H 0.05 1.42 6.92 -52.49 -0.36 1.06 16 9 N -0.57 -12.93 2.30 -165.61 -0.38 -13.31 16 10 C 0.15 3.28 5.55 -4.04 -0.02 3.25 16 11 C 0.06 1.07 7.39 37.15 0.27 1.35 16 12 O -0.54 -10.79 13.40 -35.23 -0.47 -11.27 16 13 C 0.18 3.27 2.59 -67.89 -0.18 3.09 16 14 C -0.13 -2.46 5.31 -26.61 -0.14 -2.60 16 15 C 0.11 1.71 6.42 -3.71 -0.02 1.69 16 16 N -0.59 -8.55 2.98 -173.74 -0.52 -9.07 16 17 C 0.56 8.54 7.46 -12.43 -0.09 8.45 16 18 O -0.54 -9.82 16.24 5.30 0.09 -9.73 16 19 C -0.19 -2.37 5.55 -104.82 -0.58 -2.96 16 20 C -0.01 -0.06 9.73 -38.92 -0.38 -0.44 16 21 C -0.19 -1.83 10.02 -39.34 -0.39 -2.22 16 22 C 0.33 3.50 7.74 -16.96 -0.13 3.37 16 23 O -0.48 -4.26 13.55 -18.20 -0.25 -4.50 16 24 N -0.51 -6.11 10.37 -13.34 -0.14 -6.25 16 25 C 0.14 1.65 8.64 -17.14 -0.15 1.50 16 26 C 0.08 0.96 4.92 -3.56 -0.02 0.95 16 27 C -0.14 -2.24 5.30 -26.61 -0.14 -2.38 16 28 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.10 2.49 5.75 -51.93 -0.30 2.20 16 30 H 0.04 0.75 8.04 -51.93 -0.42 0.33 16 31 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.35 4.96 9.12 45.56 0.42 5.37 16 34 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 35 H 0.07 1.54 7.71 -51.93 -0.40 1.14 16 36 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.40 7.01 -51.93 -0.36 1.04 16 39 H 0.15 1.55 8.02 -52.49 -0.42 1.13 16 40 H 0.15 1.01 8.06 -52.48 -0.42 0.58 16 41 H 0.40 1.54 9.06 45.56 0.41 1.95 16 42 H 0.18 1.77 5.28 -52.49 -0.28 1.49 16 43 H 0.10 1.07 3.56 -52.78 -0.19 0.88 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.07 1.31 7.08 -51.93 -0.37 0.94 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -33.96 371.56 -7.41 -41.37 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.77 Total: 7.45 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -2.18 Total: 7.24 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.39 Total: -53.09 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.63 Total: -25.50 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.96 -7.41 -41.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098553064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.776 kcal (2) G-P(sol) polarization free energy of solvation -33.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds