Wall clock time and date at job start Tue Mar 31 2020 18:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00213 * 2 1 4 4 H 1.48496 * 109.47103 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46981 * 299.99974 * 3 2 1 6 6 H 1.48504 * 109.47322 * 59.99541 * 3 2 1 7 7 C 1.38813 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00142 * 160.51736 * 7 2 1 9 9 N 1.36941 * 120.00090 * 340.51987 * 7 2 1 10 10 C 1.46502 * 119.99931 * 319.57822 * 9 7 2 11 11 C 1.52993 * 109.47076 * 264.45091 * 10 9 7 12 12 O 1.42892 * 109.47613 * 65.00194 * 11 10 9 13 13 C 1.46502 * 119.99819 * 139.58014 * 9 7 2 14 14 C 1.53039 * 109.46176 * 299.99988 * 13 9 7 15 15 C 1.53189 * 109.31262 * 181.38683 * 14 13 9 16 16 N 1.46921 * 108.89338 * 305.29140 * 15 14 13 17 17 C 1.34784 * 120.63375 * 233.68246 * 16 15 14 18 18 O 1.21573 * 119.99600 * 358.31073 * 17 16 15 19 19 C 1.47617 * 120.00052 * 178.31075 * 17 16 15 20 20 C 1.40285 * 120.49464 * 212.45222 * 19 17 16 21 21 C 1.37951 * 118.35586 * 180.02562 * 20 19 17 22 22 C 1.39169 * 119.26394 * 359.97438 * 21 20 19 23 23 O 1.35502 * 119.52585 * 179.97438 * 22 21 20 24 24 N 1.32407 * 120.94934 * 0.02562 * 22 21 20 25 25 C 1.31669 * 121.80046 * 359.69554 * 24 22 21 26 26 C 1.47208 * 118.55752 * 53.54037 * 16 15 14 27 27 C 1.53040 * 109.45947 * 60.06886 * 13 9 7 28 28 H 0.97000 * 119.99767 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46964 * 24.45288 * 10 9 7 30 30 H 1.09003 * 109.46528 * 144.45145 * 10 9 7 31 31 H 1.09004 * 109.47256 * 185.00442 * 11 10 9 32 32 H 1.09005 * 109.46988 * 305.00040 * 11 10 9 33 33 H 0.96697 * 114.00527 * 180.02562 * 12 11 10 34 34 H 1.09000 * 109.45726 * 180.02562 * 13 9 7 35 35 H 1.09006 * 109.49926 * 61.43391 * 14 13 9 36 36 H 1.09003 * 109.52221 * 301.35809 * 14 13 9 37 37 H 1.08994 * 109.58888 * 65.15128 * 15 14 13 38 38 H 1.09005 * 109.58649 * 185.43863 * 15 14 13 39 39 H 1.07996 * 120.82042 * 359.97438 * 20 19 17 40 40 H 1.08004 * 120.37100 * 180.02562 * 21 20 19 41 41 H 0.96697 * 114.00079 * 90.00561 * 23 22 21 42 42 H 1.07988 * 119.69202 * 180.29457 * 25 24 22 43 43 H 1.09000 * 109.53814 * 186.67588 * 26 16 15 44 44 H 1.09002 * 109.67723 * 66.36526 * 26 16 15 45 45 H 1.09000 * 109.49821 * 298.56574 * 27 13 9 46 46 H 1.09001 * 109.49857 * 58.66128 * 27 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0438 -1.2292 -0.3114 9 7 1.3843 -2.3540 0.3965 10 6 0.4745 -2.3357 1.5447 11 6 1.2330 -2.7620 2.8032 12 8 2.2400 -1.7937 3.1034 13 6 1.6244 -3.6045 -0.3280 14 6 1.2007 -3.4367 -1.7890 15 6 1.4209 -4.7564 -2.5350 16 7 2.8182 -5.1749 -2.3592 17 6 3.5910 -5.4545 -3.4275 18 8 3.1245 -5.3912 -4.5484 19 6 5.0037 -5.8377 -3.2366 20 6 5.9709 -5.4902 -4.1915 21 6 7.2779 -5.8712 -3.9688 22 6 7.5923 -6.5812 -2.8139 23 8 8.8743 -6.9585 -2.5901 24 7 6.6564 -6.8942 -1.9311 25 6 5.3980 -6.5461 -2.1010 26 6 3.3551 -5.2787 -0.9925 27 6 3.1132 -3.9531 -0.2636 28 1 -0.4850 0.8401 -0.0004 29 1 0.0817 -1.3281 1.6810 30 1 -0.3499 -3.0260 1.3660 31 1 0.5376 -2.8344 3.6395 32 1 1.7005 -3.7321 2.6345 33 1 2.7618 -2.0001 3.8909 34 1 1.0439 -4.4060 0.1288 35 1 1.7983 -2.6522 -2.2533 36 1 0.1460 -3.1651 -1.8335 37 1 0.7570 -5.5202 -2.1302 38 1 1.2123 -4.6158 -3.5957 39 1 5.6988 -4.9389 -5.0793 40 1 8.0489 -5.6205 -4.6824 41 1 9.3955 -6.3088 -2.0988 42 1 4.6633 -6.8153 -1.3567 43 1 4.4251 -5.4820 -1.0356 44 1 2.8510 -6.0855 -0.4604 45 1 3.6927 -3.1637 -0.7423 46 1 3.4196 -4.0495 0.7780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098553064.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:19 Heat of formation + Delta-G solvation = -64.418407 kcal Electronic energy + Delta-G solvation = -29900.132234 eV Core-core repulsion = 25790.885108 eV Total energy + Delta-G solvation = -4109.247126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.11258 -40.69077 -39.08428 -38.01618 -37.66403 -36.25722 -33.91865 -33.69835 -32.85812 -31.94190 -30.94295 -29.37696 -26.88854 -25.58175 -25.19062 -24.31409 -23.71899 -22.36824 -21.65170 -20.52583 -19.89262 -18.96685 -18.18278 -18.09260 -17.76211 -17.20902 -16.92916 -16.69862 -16.17771 -16.07088 -15.67011 -15.54397 -15.31010 -14.94319 -14.56497 -14.51187 -14.41241 -14.16200 -14.03419 -13.85517 -13.64368 -13.09022 -13.02603 -12.88881 -12.86398 -12.76359 -12.56187 -12.32747 -12.10053 -11.82289 -11.63299 -11.48322 -11.20125 -11.10172 -11.01694 -10.58338 -10.52923 -10.39726 -10.03010 -9.66412 -8.39595 -7.73805 -5.33404 -0.50779 0.05955 1.41690 1.46038 1.53306 1.57243 1.89236 2.47178 2.55541 2.64964 3.31249 3.37007 3.51137 3.59918 3.71007 3.86659 3.88406 3.94887 4.13543 4.19951 4.23236 4.36725 4.45959 4.52658 4.61689 4.62639 4.70828 4.75640 4.80463 4.84136 4.90042 4.91641 4.96412 5.11290 5.14431 5.24583 5.31377 5.44532 5.63491 5.65035 5.76651 5.84010 6.31694 6.51106 6.58098 6.74837 7.00149 7.24555 7.32059 7.99038 8.49187 9.23069 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012980 B = 0.003300 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.631967 B = 8481.899775 C = 8597.448595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.031 4.031 3 Si 0.939 3.061 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.295 1.295 7 C -0.219 4.219 8 H 0.040 0.960 9 N -0.584 5.584 10 C 0.144 3.856 11 C 0.068 3.932 12 O -0.577 6.577 13 C 0.172 3.828 14 C -0.121 4.121 15 C 0.123 3.877 16 N -0.594 5.594 17 C 0.562 3.438 18 O -0.579 6.579 19 C -0.206 4.206 20 C -0.012 4.012 21 C -0.182 4.182 22 C 0.328 3.672 23 O -0.487 6.487 24 N -0.524 5.524 25 C 0.148 3.852 26 C 0.084 3.916 27 C -0.127 4.127 28 H 0.245 0.755 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.375 0.625 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.152 0.848 40 H 0.176 0.824 41 H 0.426 0.574 42 H 0.202 0.798 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.036 0.964 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.061 -15.180 -0.014 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.228 4.228 3 Si 0.770 3.230 4 H -0.199 1.199 5 H -0.225 1.225 6 H -0.222 1.222 7 C -0.351 4.351 8 H 0.057 0.943 9 N -0.304 5.304 10 C 0.017 3.983 11 C -0.012 4.012 12 O -0.383 6.383 13 C 0.066 3.934 14 C -0.161 4.161 15 C 0.000 4.000 16 N -0.325 5.325 17 C 0.351 3.649 18 O -0.461 6.461 19 C -0.212 4.212 20 C -0.038 4.038 21 C -0.202 4.202 22 C 0.149 3.851 23 O -0.298 6.298 24 N -0.243 5.243 25 C -0.009 4.009 26 C -0.037 4.037 27 C -0.167 4.167 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.221 0.779 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.091 0.909 39 H 0.169 0.831 40 H 0.194 0.806 41 H 0.289 0.711 42 H 0.218 0.782 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.055 0.945 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 11.606 -15.682 -0.686 19.522 hybrid contribution 0.171 2.221 -0.036 2.228 sum 11.777 -13.461 -0.721 17.900 Atomic orbital electron populations 1.70099 1.06342 1.25144 1.54982 1.25619 0.95483 1.00679 1.00979 0.85653 0.79048 0.82044 0.76274 1.19918 1.22484 1.22191 1.18737 0.92107 0.86212 1.38004 0.94253 1.43851 1.52084 1.04588 1.29852 1.20889 0.90968 1.00937 0.85477 1.22890 0.90006 0.90815 0.97446 1.86763 1.51116 1.50237 1.50145 1.20550 0.94194 0.88456 0.90243 1.22110 1.00429 0.95617 0.97951 1.21628 0.81073 0.96191 1.01109 1.48161 1.12412 1.65153 1.06796 1.18277 0.85747 0.76787 0.84061 1.90751 1.75058 1.55366 1.24879 1.20919 0.94173 1.06785 0.99278 1.21748 0.91500 0.93505 0.97084 1.22291 0.97832 1.00054 1.00070 1.19649 0.85953 0.89544 0.89904 1.84667 1.17344 1.49388 1.78433 1.67310 1.02328 1.21929 1.32709 1.23591 0.92175 0.91099 0.94010 1.22914 1.01558 0.98758 0.80488 1.22175 0.98236 0.95940 1.00358 0.94619 0.92896 0.93428 0.93809 0.93543 0.77859 0.90985 0.95058 0.92963 0.88830 0.90902 0.83078 0.80637 0.71132 0.78208 0.86890 0.87207 0.94538 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.66 11.65 21.65 0.25 -53.41 16 2 C -0.03 -1.74 4.92 84.86 0.42 -1.32 16 3 Si 0.94 46.34 29.60 68.60 2.03 48.37 16 4 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 6 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 7 C -0.22 -11.61 7.98 84.03 0.67 -10.94 16 8 H 0.04 2.18 6.92 -2.91 -0.02 2.16 16 9 N -0.58 -26.44 2.30 -677.88 -1.56 -28.00 16 10 C 0.14 6.24 5.55 86.38 0.48 6.72 16 11 C 0.07 2.34 7.39 71.98 0.53 2.87 16 12 O -0.58 -21.90 13.40 -148.98 -2.00 -23.89 16 13 C 0.17 6.16 2.59 45.02 0.12 6.28 16 14 C -0.12 -4.55 5.31 30.67 0.16 -4.39 16 15 C 0.12 3.65 6.42 86.36 0.55 4.21 16 16 N -0.59 -16.22 2.98 -821.86 -2.45 -18.67 16 17 C 0.56 16.62 7.46 86.72 0.65 17.26 16 18 O -0.58 -21.17 16.24 -3.95 -0.06 -21.23 16 19 C -0.21 -4.92 5.55 -19.99 -0.11 -5.03 16 20 C -0.01 -0.26 9.73 22.70 0.22 -0.04 16 21 C -0.18 -3.00 10.02 22.43 0.22 -2.78 16 22 C 0.33 6.10 7.74 84.83 0.66 6.76 16 23 O -0.49 -7.08 13.55 -88.04 -1.19 -8.27 16 24 N -0.52 -11.22 10.37 -309.00 -3.20 -14.42 16 25 C 0.15 3.02 8.64 85.03 0.73 3.76 16 26 C 0.08 1.84 4.92 86.31 0.43 2.27 16 27 C -0.13 -3.86 5.30 30.67 0.16 -3.70 16 28 H 0.24 14.04 8.31 -92.71 -0.77 13.27 16 29 H 0.05 2.80 5.75 -2.39 -0.01 2.79 16 30 H 0.05 1.91 8.04 -2.39 -0.02 1.89 16 31 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.38 9.71 9.12 -74.06 -0.68 9.03 16 34 H 0.07 2.24 7.87 -2.39 -0.02 2.22 16 35 H 0.03 1.40 7.71 -2.38 -0.02 1.38 16 36 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.07 2.39 7.01 -2.38 -0.02 2.38 16 39 H 0.15 3.05 8.02 -2.91 -0.02 3.02 16 40 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 41 H 0.43 1.87 9.06 -74.06 -0.67 1.20 16 42 H 0.20 3.14 5.28 -2.92 -0.02 3.13 16 43 H 0.11 2.16 3.56 -3.19 -0.01 2.15 16 44 H 0.11 1.70 8.14 -2.39 -0.02 1.69 16 45 H 0.04 1.35 7.08 -2.39 -0.02 1.33 16 46 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -76.73 371.56 -2.60 -79.33 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -0.31 Total: 18.29 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 5.89 Total: 21.92 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -6.96 Total: -114.50 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -3.25 Total: -53.40 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -76.73 -2.60 -79.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098553064.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.909 kcal (2) G-P(sol) polarization free energy of solvation -76.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds