Wall clock time and date at job start Tue Mar 31 2020 18:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 120.00030 * 2 1 4 4 H 1.48505 * 109.46937 * 269.99894 * 3 2 1 5 5 H 1.48497 * 109.47191 * 29.99732 * 3 2 1 6 6 H 1.48508 * 109.47440 * 150.00042 * 3 2 1 7 7 C 1.38814 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99826 * 197.35513 * 7 2 1 9 9 N 1.36940 * 120.00238 * 17.35261 * 7 2 1 10 10 C 1.46925 * 120.62537 * 27.67774 * 9 7 2 11 11 C 1.53196 * 108.77416 * 126.41090 * 10 9 7 12 12 C 1.53040 * 109.31217 * 54.63496 * 11 10 9 13 13 H 1.09005 * 109.46136 * 58.63900 * 12 11 10 14 14 N 1.46497 * 109.46115 * 178.61639 * 12 11 10 15 15 C 1.34782 * 119.99922 * 275.02562 * 14 12 11 16 16 O 1.21283 * 119.99550 * 0.02562 * 15 14 12 17 17 C 1.50694 * 120.00168 * 180.02562 * 15 14 12 18 18 C 1.53000 * 109.47208 * 179.97438 * 17 15 14 19 19 N 1.46502 * 109.47054 * 179.97438 * 18 17 15 20 20 C 1.35760 * 119.62806 * 270.23409 * 19 18 17 21 21 C 1.35350 * 120.70039 * 180.28232 * 20 19 18 22 22 C 1.40194 * 119.94708 * 359.74613 * 21 20 19 23 23 C 1.36395 * 119.26954 * 0.02562 * 22 21 20 24 24 C 1.34660 * 119.61879 * 90.00709 * 19 18 17 25 25 O 1.22061 * 119.99192 * 359.97438 * 24 19 18 26 26 C 1.53048 * 109.52739 * 298.62670 * 12 11 10 27 27 H 1.08994 * 109.49616 * 301.42515 * 26 12 11 28 28 O 1.42895 * 109.49614 * 181.32160 * 26 12 11 29 29 C 1.46919 * 120.63248 * 207.69899 * 9 7 2 30 30 H 0.97002 * 120.00206 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.59165 * 6.62754 * 10 9 7 32 32 H 1.09000 * 109.58854 * 246.19775 * 10 9 7 33 33 H 1.09001 * 109.49896 * 294.68334 * 11 10 9 34 34 H 1.09001 * 109.49610 * 174.58627 * 11 10 9 35 35 H 0.96998 * 120.00820 * 95.02711 * 14 12 11 36 36 H 1.09003 * 109.47460 * 60.00089 * 17 15 14 37 37 H 1.08996 * 109.47236 * 300.00163 * 17 15 14 38 38 H 1.09008 * 109.46847 * 60.00203 * 18 17 15 39 39 H 1.08996 * 109.47257 * 300.00276 * 18 17 15 40 40 H 1.08003 * 119.64870 * 0.02894 * 20 19 18 41 41 H 1.07999 * 120.02284 * 179.76937 * 21 20 19 42 42 H 1.08008 * 120.36467 * 180.02562 * 22 21 20 43 43 H 1.08001 * 120.35089 * 180.02562 * 23 22 21 44 44 H 0.96702 * 113.99584 * 180.02562 * 28 26 12 45 45 H 1.09001 * 109.58646 * 353.37112 * 29 9 7 46 46 H 1.08995 * 109.58740 * 113.65906 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0534 -1.2233 0.2796 9 7 1.3723 -2.3613 -0.3526 10 6 0.2277 -2.3351 -1.2735 11 6 0.5005 -3.3058 -2.4269 12 6 0.8183 -4.6907 -1.8584 13 1 -0.0207 -5.0367 -1.2547 14 7 1.0474 -5.6294 -2.9595 15 6 0.0035 -6.2504 -3.5438 16 8 -1.1254 -6.0315 -3.1583 17 6 0.2391 -7.2165 -4.6761 18 6 -1.1014 -7.7773 -5.1552 19 7 -0.8724 -8.7161 -6.2564 20 6 -0.8564 -8.2599 -7.5349 21 6 -0.6525 -9.1089 -8.5691 22 6 -0.4495 -10.4742 -8.3241 23 6 -0.4613 -10.9301 -7.0386 24 6 -0.6755 -10.0210 -5.9884 25 8 -0.6880 -10.4154 -4.8334 26 6 2.0743 -4.6103 -0.9875 27 1 2.9078 -4.2405 -1.5844 28 8 2.3880 -5.9095 -0.4820 29 6 1.8191 -3.6546 0.1824 30 1 -0.4850 0.8400 -0.0004 31 1 0.0985 -1.3269 -1.6673 32 1 -0.6744 -2.6412 -0.7439 33 1 1.3492 -2.9484 -3.0102 34 1 -0.3803 -3.3681 -3.0659 35 1 1.9502 -5.8042 -3.2681 36 1 0.8719 -8.0340 -4.3306 37 1 0.7317 -6.6986 -5.4990 38 1 -1.7345 -6.9600 -5.5007 39 1 -1.5936 -8.2953 -4.3321 40 1 -1.0122 -7.2089 -7.7292 41 1 -0.6456 -8.7347 -9.5822 42 1 -0.2857 -11.1577 -9.1443 43 1 -0.3064 -11.9783 -6.8299 44 1 3.1745 -5.9334 0.0801 45 1 2.7399 -3.5171 0.7492 46 1 1.0478 -4.0671 0.8327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099857722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:39 Heat of formation + Delta-G solvation = -63.714117 kcal Electronic energy + Delta-G solvation = -28765.172974 eV Core-core repulsion = 24655.956389 eV Total energy + Delta-G solvation = -4109.216586 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.63850 -39.82973 -38.04634 -37.14915 -35.45416 -35.34281 -34.34495 -32.14927 -31.35978 -30.17264 -29.84316 -28.55945 -25.93678 -24.80240 -23.96643 -22.69172 -22.31906 -21.70807 -20.23990 -19.47825 -18.03274 -17.61082 -17.28482 -16.86456 -16.63454 -16.33786 -16.10406 -15.66836 -15.45027 -14.89484 -14.80148 -14.43289 -14.06297 -13.89121 -13.60752 -13.53577 -13.16687 -12.89120 -12.75389 -12.65924 -12.33889 -12.29253 -12.07141 -12.03612 -11.60986 -11.45132 -11.14091 -10.91606 -10.71737 -10.51264 -10.37052 -10.28790 -10.18362 -9.99029 -9.87855 -9.74837 -9.45976 -8.80510 -8.49212 -8.29642 -6.81275 -5.88129 -3.32416 0.49878 1.56224 2.28150 2.73315 3.26578 3.32150 3.38849 3.40454 3.43639 4.22651 4.33080 4.33953 4.47973 4.50829 4.56835 4.75769 4.85307 4.90129 4.99341 5.14818 5.26465 5.29482 5.44304 5.44784 5.52221 5.58666 5.64877 5.74049 5.76656 5.92873 5.93161 6.07243 6.18902 6.26654 6.44798 6.48171 6.61747 6.74147 6.78904 6.81082 7.24676 7.56219 7.65644 7.69761 7.77606 7.89705 8.33915 8.35132 9.09738 9.72051 10.27878 11.20421 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024090 B = 0.002180 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.029443 B =12840.173781 C =13405.908961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.005 3.995 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.260 4.260 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.145 4.145 12 C 0.162 3.838 13 H 0.088 0.912 14 N -0.714 5.714 15 C 0.518 3.482 16 O -0.542 6.542 17 C -0.155 4.155 18 C 0.106 3.894 19 N -0.495 5.495 20 C 0.137 3.863 21 C -0.238 4.238 22 C -0.017 4.017 23 C -0.245 4.245 24 C 0.509 3.491 25 O -0.547 6.547 26 C 0.080 3.920 27 H 0.056 0.944 28 O -0.571 6.571 29 C 0.120 3.880 30 H 0.256 0.744 31 H 0.094 0.906 32 H 0.024 0.976 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.397 0.603 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.163 0.837 41 H 0.144 0.856 42 H 0.133 0.867 43 H 0.147 0.853 44 H 0.374 0.626 45 H 0.060 0.940 46 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.208 -16.402 -18.333 24.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.195 4.195 3 Si 0.735 3.265 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.044 3.956 11 C -0.186 4.186 12 C 0.058 3.942 13 H 0.106 0.894 14 N -0.363 5.363 15 C 0.303 3.697 16 O -0.419 6.419 17 C -0.196 4.196 18 C -0.016 4.016 19 N -0.206 5.206 20 C 0.009 3.991 21 C -0.261 4.261 22 C -0.039 4.039 23 C -0.267 4.267 24 C 0.311 3.689 25 O -0.429 6.429 26 C 0.019 3.981 27 H 0.074 0.926 28 O -0.375 6.375 29 C -0.007 4.007 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.230 0.770 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.180 0.820 41 H 0.162 0.838 42 H 0.151 0.849 43 H 0.164 0.836 44 H 0.221 0.779 45 H 0.078 0.922 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 0.723 -16.485 -17.560 24.096 hybrid contribution 1.467 0.990 0.003 1.769 sum 2.190 -15.495 -17.557 23.519 Atomic orbital electron populations 1.70034 1.05288 1.25776 1.53135 1.25078 0.95316 0.98561 1.00508 0.86256 0.79083 0.83463 0.77725 1.21353 1.21669 1.20392 1.19173 0.92718 0.84624 1.42378 0.91490 1.44052 1.35864 1.01056 1.50257 1.20841 0.88724 0.98384 0.87607 1.22599 1.00918 0.94272 1.00792 1.21035 0.97629 0.89250 0.86285 0.89362 1.46074 1.09165 1.44781 1.36264 1.20147 0.85291 0.80823 0.83430 1.90734 1.22544 1.64323 1.64315 1.21935 0.99335 0.99841 0.98469 1.21752 0.97174 0.92540 0.90130 1.45663 1.57411 1.10146 1.07335 1.22055 0.93632 1.00385 0.83021 1.20661 1.12697 0.93603 0.99159 1.21446 0.90054 0.95451 0.96965 1.22151 1.11319 1.00958 0.92305 1.17234 0.79571 0.81227 0.90858 1.91001 1.53394 1.76750 1.21781 1.22770 0.95938 0.83164 0.96232 0.92613 1.86491 1.50662 1.30208 1.70156 1.21531 0.98839 0.87412 0.92945 0.93407 0.88822 0.95782 0.92378 0.91954 0.77004 0.88135 0.88610 0.87998 0.87099 0.81993 0.83785 0.84895 0.83555 0.77950 0.92156 0.95266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 11.19 55.49 0.62 -24.97 16 2 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 3 Si 0.91 21.06 29.59 -169.99 -5.03 16.03 16 4 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.26 -6.86 9.59 -15.06 -0.14 -7.00 16 8 H 0.07 1.72 7.89 -52.48 -0.41 1.31 16 9 N -0.59 -14.23 2.99 -172.31 -0.52 -14.75 16 10 C 0.17 4.02 5.31 -3.71 -0.02 4.00 16 11 C -0.15 -2.77 5.65 -26.61 -0.15 -2.92 16 12 C 0.16 2.86 2.12 -67.89 -0.14 2.71 16 13 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 14 N -0.71 -10.19 4.92 -53.76 -0.26 -10.46 16 15 C 0.52 7.47 7.79 -10.99 -0.09 7.39 16 16 O -0.54 -9.92 15.64 5.55 0.09 -9.83 16 17 C -0.15 -1.58 6.02 -27.89 -0.17 -1.75 16 18 C 0.11 1.10 4.62 -4.04 -0.02 1.08 16 19 N -0.50 -4.63 2.58 -119.77 -0.31 -4.94 16 20 C 0.14 0.81 10.28 -16.84 -0.17 0.64 16 21 C -0.24 -1.21 10.01 -39.88 -0.40 -1.61 16 22 C -0.02 -0.10 10.09 -39.51 -0.40 -0.50 16 23 C -0.25 -2.21 9.99 -39.38 -0.39 -2.60 16 24 C 0.51 6.13 7.41 -15.44 -0.11 6.01 16 25 O -0.55 -8.95 16.64 4.86 0.08 -8.87 16 26 C 0.08 1.34 3.14 -26.60 -0.08 1.26 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 O -0.57 -8.59 13.16 -35.23 -0.46 -9.05 16 29 C 0.12 2.43 6.14 -3.71 -0.02 2.41 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.09 2.45 6.04 -51.93 -0.31 2.13 16 32 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.40 4.62 8.60 -40.82 -0.35 4.27 16 36 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.10 0.90 7.97 -51.92 -0.41 0.49 16 39 H 0.11 1.47 7.35 -51.93 -0.38 1.09 16 40 H 0.16 0.47 8.04 -52.48 -0.42 0.05 16 41 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 42 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 43 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.37 4.05 9.08 45.56 0.41 4.46 16 45 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 46 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 381.07 15.07 5.74 5.74 Total: -1.00 -35.46 381.07 -8.50 -43.96 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.05 Total: 7.98 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: -2.40 Total: 9.15 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.47 Total: -55.11 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.30 Total: -27.75 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.46 -8.50 -43.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099857722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.752 kcal (2) G-P(sol) polarization free energy of solvation -35.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds