Wall clock time and date at job start Tue Mar 31 2020 18:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00073 * 2 1 4 4 H 1.48510 * 109.47176 * 239.99857 * 3 2 1 5 5 H 1.48501 * 109.47471 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47195 * 120.00021 * 3 2 1 7 7 C 1.38812 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00221 * 197.36010 * 7 2 1 9 9 N 1.36943 * 120.00065 * 17.36414 * 7 2 1 10 10 C 1.46921 * 120.62986 * 27.68297 * 9 7 2 11 11 C 1.53196 * 108.77184 * 126.37251 * 10 9 7 12 12 C 1.53035 * 109.31611 * 54.63518 * 11 10 9 13 13 H 1.08996 * 109.46118 * 178.62660 * 12 11 10 14 14 N 1.46506 * 109.45844 * 58.65055 * 12 11 10 15 15 C 1.34780 * 119.99555 * 85.00559 * 14 12 11 16 16 O 1.21283 * 120.00228 * 359.97438 * 15 14 12 17 17 C 1.50698 * 119.99679 * 180.02562 * 15 14 12 18 18 C 1.53009 * 109.47076 * 179.97438 * 17 15 14 19 19 N 1.46493 * 109.47071 * 179.97438 * 18 17 15 20 20 C 1.35765 * 119.62875 * 89.99952 * 19 18 17 21 21 C 1.35346 * 120.70280 * 180.02562 * 20 19 18 22 22 C 1.40199 * 119.94948 * 359.97312 * 21 20 19 23 23 C 1.36395 * 119.26561 * 0.02562 * 22 21 20 24 24 C 1.34669 * 119.62215 * 270.25776 * 19 18 17 25 25 O 1.22052 * 119.98524 * 359.97438 * 24 19 18 26 26 C 1.53037 * 109.53567 * 298.63703 * 12 11 10 27 27 H 1.09002 * 109.49855 * 301.40805 * 26 12 11 28 28 O 1.42901 * 109.49709 * 181.31481 * 26 12 11 29 29 C 1.46920 * 120.62739 * 207.66610 * 9 7 2 30 30 H 0.97002 * 119.99495 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.58718 * 6.58513 * 10 9 7 32 32 H 1.08996 * 109.58855 * 246.15539 * 10 9 7 33 33 H 1.08996 * 109.49873 * 294.67907 * 11 10 9 34 34 H 1.09002 * 109.49641 * 174.58882 * 11 10 9 35 35 H 0.96995 * 120.00494 * 265.00390 * 14 12 11 36 36 H 1.08996 * 109.47339 * 59.99544 * 17 15 14 37 37 H 1.09005 * 109.46837 * 299.99122 * 17 15 14 38 38 H 1.09000 * 109.46707 * 59.99350 * 18 17 15 39 39 H 1.09005 * 109.46534 * 299.99854 * 18 17 15 40 40 H 1.07997 * 119.64546 * 0.02562 * 20 19 18 41 41 H 1.08002 * 120.02921 * 180.02562 * 21 20 19 42 42 H 1.07997 * 120.36634 * 180.02562 * 22 21 20 43 43 H 1.07997 * 120.34831 * 179.97438 * 23 22 21 44 44 H 0.96706 * 114.00441 * 179.97438 * 28 26 12 45 45 H 1.09002 * 109.59155 * 353.41605 * 29 9 7 46 46 H 1.08994 * 109.58863 * 113.70285 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0534 -1.2234 0.2796 9 7 1.3723 -2.3613 -0.3529 10 6 0.2280 -2.3350 -1.2740 11 6 0.5015 -3.3049 -2.4278 12 6 0.8197 -4.6900 -1.8601 13 1 0.9907 -5.3879 -2.6797 14 7 -0.3082 -5.1561 -1.0495 15 6 -1.3490 -5.7784 -1.6376 16 8 -1.3521 -5.9521 -2.8380 17 6 -2.5094 -6.2573 -0.8039 18 6 -3.5475 -6.9233 -1.7095 19 7 -4.6753 -7.3894 -0.8990 20 6 -5.7291 -6.5628 -0.6768 21 6 -6.7822 -6.9708 0.0692 22 6 -6.7916 -8.2596 0.6208 23 6 -5.7320 -9.0887 0.3965 24 6 -4.6525 -8.6312 -0.3783 25 8 -3.6961 -9.3611 -0.5833 26 6 2.0751 -4.6098 -0.9886 27 1 2.9090 -4.2396 -1.5849 28 8 2.3890 -5.9093 -0.4837 29 6 1.8195 -3.6547 0.1816 30 1 -0.4849 0.8401 -0.0004 31 1 0.0985 -1.3266 -1.6672 32 1 -0.6742 -2.6418 -0.7448 33 1 1.3501 -2.9469 -3.0107 34 1 -0.3791 -3.3673 -3.0671 35 1 -0.3059 -5.0169 -0.0896 36 1 -2.9644 -5.4088 -0.2930 37 1 -2.1544 -6.9776 -0.0668 38 1 -3.0927 -7.7717 -2.2207 39 1 -3.9024 -6.2027 -2.4464 40 1 -5.7270 -5.5691 -1.0998 41 1 -7.6150 -6.3043 0.2386 42 1 -7.6286 -8.5923 1.2167 43 1 -5.7209 -10.0849 0.8134 44 1 3.1757 -5.9336 0.0782 45 1 2.7400 -3.5172 0.7489 46 1 1.0481 -4.0679 0.8314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099857724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:46 Heat of formation + Delta-G solvation = -61.889877 kcal Electronic energy + Delta-G solvation = -29313.580106 eV Core-core repulsion = 25204.442626 eV Total energy + Delta-G solvation = -4109.137481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.53524 -39.87738 -38.03023 -37.04954 -35.49431 -35.22197 -34.07713 -31.99717 -31.22316 -30.15383 -29.87031 -28.60767 -25.78108 -25.05448 -23.89613 -22.60428 -22.26570 -21.85640 -20.51523 -18.79407 -17.94687 -17.50843 -17.23716 -16.93379 -16.56685 -16.27728 -15.89307 -15.52351 -15.08688 -14.99094 -14.77779 -14.35126 -14.22410 -13.94892 -13.79052 -13.44248 -13.14327 -12.80083 -12.66352 -12.56691 -12.31942 -12.16773 -12.02716 -11.93872 -11.70167 -11.32818 -11.22559 -10.92310 -10.72694 -10.46187 -10.40278 -10.26316 -10.08723 -10.00487 -9.88685 -9.59145 -9.48242 -8.67045 -8.56397 -8.19337 -6.83829 -5.92857 -3.36655 0.60372 1.66648 2.39212 2.85745 3.30128 3.36626 3.37502 3.39092 3.55912 4.31905 4.35825 4.43604 4.48272 4.63587 4.67722 4.88333 4.97541 5.00890 5.11609 5.22680 5.25707 5.32557 5.41849 5.53467 5.57738 5.66208 5.69343 5.75681 5.87225 5.91996 6.01503 6.03216 6.20913 6.29456 6.39974 6.48729 6.59985 6.63177 6.88429 6.89284 7.20681 7.51439 7.65932 7.79674 7.87086 7.89279 8.29924 8.46359 9.05704 9.67906 10.23039 11.15340 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015315 B = 0.002718 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.866862 B =10301.036360 C =11339.088350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.587 5.587 10 C 0.173 3.827 11 C -0.153 4.153 12 C 0.165 3.835 13 H 0.079 0.921 14 N -0.702 5.702 15 C 0.522 3.478 16 O -0.552 6.552 17 C -0.156 4.156 18 C 0.107 3.893 19 N -0.495 5.495 20 C 0.138 3.862 21 C -0.239 4.239 22 C -0.016 4.016 23 C -0.247 4.247 24 C 0.510 3.490 25 O -0.549 6.549 26 C 0.075 3.925 27 H 0.066 0.934 28 O -0.570 6.570 29 C 0.118 3.882 30 H 0.256 0.744 31 H 0.090 0.910 32 H 0.020 0.980 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.403 0.597 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.164 0.836 41 H 0.145 0.855 42 H 0.133 0.867 43 H 0.146 0.854 44 H 0.374 0.626 45 H 0.059 0.941 46 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.208 -11.652 0.596 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.193 4.193 12 C 0.061 3.939 13 H 0.097 0.903 14 N -0.352 5.352 15 C 0.307 3.693 16 O -0.431 6.431 17 C -0.197 4.197 18 C -0.014 4.014 19 N -0.205 5.205 20 C 0.011 3.989 21 C -0.262 4.262 22 C -0.038 4.038 23 C -0.269 4.269 24 C 0.312 3.688 25 O -0.432 6.432 26 C 0.014 3.986 27 H 0.084 0.916 28 O -0.375 6.375 29 C -0.009 4.009 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.238 0.762 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.181 0.819 41 H 0.162 0.838 42 H 0.151 0.849 43 H 0.164 0.836 44 H 0.220 0.780 45 H 0.077 0.923 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -11.177 -12.245 -0.751 16.596 hybrid contribution 0.818 1.284 0.983 1.812 sum -10.359 -10.961 0.233 15.084 Atomic orbital electron populations 1.70021 1.05296 1.25838 1.53193 1.25040 0.95308 0.98510 1.00436 0.86341 0.78937 0.83098 0.78199 1.20919 1.21555 1.20829 1.19123 0.92722 0.84679 1.42405 0.91613 1.44003 1.35955 1.00883 1.50266 1.20788 0.88435 0.98399 0.87674 1.22591 1.01530 0.94767 1.00437 1.20843 0.83763 0.96406 0.92900 0.90281 1.45917 1.19514 1.58044 1.11752 1.20099 0.83438 0.77506 0.88239 1.90683 1.79943 1.57566 1.14893 1.21931 0.95489 1.02481 0.99809 1.21734 0.85460 1.01771 0.92446 1.45660 1.17708 1.14038 1.43092 1.22081 0.86453 0.95668 0.94736 1.20665 1.00739 0.98551 1.06212 1.21442 0.96745 0.92568 0.93055 1.22133 0.95413 1.02867 1.06506 1.17219 0.89097 0.80631 0.81870 1.90985 1.36326 1.54143 1.61710 1.22745 0.96175 0.83004 0.96646 0.91565 1.86494 1.50520 1.30202 1.70264 1.21536 0.98506 0.87687 0.93171 0.93448 0.89209 0.96151 0.91457 0.91856 0.76163 0.88321 0.88169 0.87254 0.88039 0.81900 0.83759 0.84924 0.83607 0.77953 0.92264 0.96000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.68 11.19 55.49 0.62 -24.06 16 2 C 0.01 0.16 4.91 -17.43 -0.09 0.08 16 3 Si 0.90 20.73 29.59 -169.99 -5.03 15.70 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.26 -6.69 9.58 -15.06 -0.14 -6.83 16 8 H 0.07 1.66 7.89 -52.48 -0.41 1.24 16 9 N -0.59 -13.52 2.99 -172.32 -0.52 -14.03 16 10 C 0.17 3.84 5.05 -3.71 -0.02 3.82 16 11 C -0.15 -2.89 5.77 -26.61 -0.15 -3.05 16 12 C 0.17 2.90 2.47 -67.89 -0.17 2.73 16 13 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 14 N -0.70 -11.37 4.15 -53.77 -0.22 -11.59 16 15 C 0.52 8.22 7.79 -10.99 -0.09 8.14 16 16 O -0.55 -10.23 15.64 5.55 0.09 -10.14 16 17 C -0.16 -1.90 6.02 -27.88 -0.17 -2.07 16 18 C 0.11 1.24 4.62 -4.04 -0.02 1.23 16 19 N -0.49 -5.27 2.58 -119.77 -0.31 -5.58 16 20 C 0.14 1.03 10.28 -16.84 -0.17 0.86 16 21 C -0.24 -1.55 10.01 -39.88 -0.40 -1.95 16 22 C -0.02 -0.12 10.10 -39.51 -0.40 -0.52 16 23 C -0.25 -2.49 9.99 -39.38 -0.39 -2.88 16 24 C 0.51 6.68 7.41 -15.44 -0.11 6.57 16 25 O -0.55 -9.45 16.64 4.87 0.08 -9.36 16 26 C 0.08 1.25 3.36 -26.61 -0.09 1.16 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 28 O -0.57 -8.57 13.21 -35.23 -0.47 -9.04 16 29 C 0.12 2.23 5.84 -3.71 -0.02 2.21 16 30 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.09 2.28 6.03 -51.93 -0.31 1.97 16 32 H 0.02 0.47 7.74 -51.93 -0.40 0.07 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.40 6.29 6.87 -40.82 -0.28 6.01 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.11 1.53 7.35 -51.93 -0.38 1.15 16 39 H 0.10 1.02 7.97 -51.93 -0.41 0.60 16 40 H 0.16 0.76 8.04 -52.49 -0.42 0.34 16 41 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.15 16 43 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.37 4.03 9.09 45.56 0.41 4.45 16 45 H 0.06 1.08 7.93 -51.93 -0.41 0.67 16 46 H 0.02 0.42 6.65 -51.93 -0.35 0.07 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -33.82 376.85 -8.39 -42.21 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -5.88 Total: 10.71 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -2.43 Total: 9.51 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.43 Total: -55.26 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.30 Total: -28.54 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.82 -8.39 -42.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099857724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.682 kcal (2) G-P(sol) polarization free energy of solvation -33.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds