Wall clock time and date at job start Tue Mar 31 2020 18:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00073 * 2 1 4 4 H 1.48510 * 109.47176 * 239.99857 * 3 2 1 5 5 H 1.48501 * 109.47471 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47195 * 120.00021 * 3 2 1 7 7 C 1.38812 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00221 * 197.36010 * 7 2 1 9 9 N 1.36943 * 120.00065 * 17.36414 * 7 2 1 10 10 C 1.46921 * 120.62986 * 27.68297 * 9 7 2 11 11 C 1.53196 * 108.77184 * 126.37251 * 10 9 7 12 12 C 1.53035 * 109.31611 * 54.63518 * 11 10 9 13 13 H 1.08996 * 109.46118 * 178.62660 * 12 11 10 14 14 N 1.46506 * 109.45844 * 58.65055 * 12 11 10 15 15 C 1.34780 * 119.99555 * 85.00559 * 14 12 11 16 16 O 1.21283 * 120.00228 * 359.97438 * 15 14 12 17 17 C 1.50698 * 119.99679 * 180.02562 * 15 14 12 18 18 C 1.53009 * 109.47076 * 179.97438 * 17 15 14 19 19 N 1.46493 * 109.47071 * 179.97438 * 18 17 15 20 20 C 1.35765 * 119.62875 * 89.99952 * 19 18 17 21 21 C 1.35346 * 120.70280 * 180.02562 * 20 19 18 22 22 C 1.40199 * 119.94948 * 359.97312 * 21 20 19 23 23 C 1.36395 * 119.26561 * 0.02562 * 22 21 20 24 24 C 1.34669 * 119.62215 * 270.25776 * 19 18 17 25 25 O 1.22052 * 119.98524 * 359.97438 * 24 19 18 26 26 C 1.53037 * 109.53567 * 298.63703 * 12 11 10 27 27 H 1.09002 * 109.49855 * 301.40805 * 26 12 11 28 28 O 1.42901 * 109.49709 * 181.31481 * 26 12 11 29 29 C 1.46920 * 120.62739 * 207.66610 * 9 7 2 30 30 H 0.97002 * 119.99495 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.58718 * 6.58513 * 10 9 7 32 32 H 1.08996 * 109.58855 * 246.15539 * 10 9 7 33 33 H 1.08996 * 109.49873 * 294.67907 * 11 10 9 34 34 H 1.09002 * 109.49641 * 174.58882 * 11 10 9 35 35 H 0.96995 * 120.00494 * 265.00390 * 14 12 11 36 36 H 1.08996 * 109.47339 * 59.99544 * 17 15 14 37 37 H 1.09005 * 109.46837 * 299.99122 * 17 15 14 38 38 H 1.09000 * 109.46707 * 59.99350 * 18 17 15 39 39 H 1.09005 * 109.46534 * 299.99854 * 18 17 15 40 40 H 1.07997 * 119.64546 * 0.02562 * 20 19 18 41 41 H 1.08002 * 120.02921 * 180.02562 * 21 20 19 42 42 H 1.07997 * 120.36634 * 180.02562 * 22 21 20 43 43 H 1.07997 * 120.34831 * 179.97438 * 23 22 21 44 44 H 0.96706 * 114.00441 * 179.97438 * 28 26 12 45 45 H 1.09002 * 109.59155 * 353.41605 * 29 9 7 46 46 H 1.08994 * 109.58863 * 113.70285 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0534 -1.2234 0.2796 9 7 1.3723 -2.3613 -0.3529 10 6 0.2280 -2.3350 -1.2740 11 6 0.5015 -3.3049 -2.4278 12 6 0.8197 -4.6900 -1.8601 13 1 0.9907 -5.3879 -2.6797 14 7 -0.3082 -5.1561 -1.0495 15 6 -1.3490 -5.7784 -1.6376 16 8 -1.3521 -5.9521 -2.8380 17 6 -2.5094 -6.2573 -0.8039 18 6 -3.5475 -6.9233 -1.7095 19 7 -4.6753 -7.3894 -0.8990 20 6 -5.7291 -6.5628 -0.6768 21 6 -6.7822 -6.9708 0.0692 22 6 -6.7916 -8.2596 0.6208 23 6 -5.7320 -9.0887 0.3965 24 6 -4.6525 -8.6312 -0.3783 25 8 -3.6961 -9.3611 -0.5833 26 6 2.0751 -4.6098 -0.9886 27 1 2.9090 -4.2396 -1.5849 28 8 2.3890 -5.9093 -0.4837 29 6 1.8195 -3.6547 0.1816 30 1 -0.4849 0.8401 -0.0004 31 1 0.0985 -1.3266 -1.6672 32 1 -0.6742 -2.6418 -0.7448 33 1 1.3501 -2.9469 -3.0107 34 1 -0.3791 -3.3673 -3.0671 35 1 -0.3059 -5.0169 -0.0896 36 1 -2.9644 -5.4088 -0.2930 37 1 -2.1544 -6.9776 -0.0668 38 1 -3.0927 -7.7717 -2.2207 39 1 -3.9024 -6.2027 -2.4464 40 1 -5.7270 -5.5691 -1.0998 41 1 -7.6150 -6.3043 0.2386 42 1 -7.6286 -8.5923 1.2167 43 1 -5.7209 -10.0849 0.8134 44 1 3.1757 -5.9336 0.0782 45 1 2.7400 -3.5172 0.7489 46 1 1.0481 -4.0679 0.8314 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099857724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:45 Heat of formation + Delta-G solvation = -86.717049 kcal Electronic energy + Delta-G solvation = -29314.656693 eV Core-core repulsion = 25204.442626 eV Total energy + Delta-G solvation = -4110.214068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.36326 -41.22967 -39.44065 -37.96232 -36.95937 -36.07925 -35.57719 -33.60178 -32.49779 -31.49062 -30.71983 -30.12501 -27.33151 -26.24411 -24.64665 -23.98516 -23.63637 -23.20003 -21.76370 -20.31981 -18.95758 -18.80885 -18.28448 -18.05816 -17.85168 -17.13316 -17.04695 -16.82536 -16.66144 -16.32241 -15.89254 -15.61071 -15.45133 -15.19127 -15.00939 -14.84294 -14.54608 -14.19280 -13.81750 -13.75007 -13.54497 -13.27721 -13.22177 -13.01728 -12.84295 -12.71625 -12.69127 -12.36222 -12.29190 -12.22663 -11.98809 -11.83834 -11.32573 -11.21105 -11.04118 -11.00843 -10.85356 -10.50134 -10.05101 -8.95967 -8.70833 -7.89280 -5.34542 -0.05483 0.94362 1.48556 1.51441 1.54424 1.56959 1.58962 2.26259 2.49966 2.71416 3.13991 3.27096 3.58305 3.65279 3.65921 3.76362 3.87285 3.95459 4.01925 4.05267 4.20048 4.23433 4.30765 4.36278 4.38270 4.48554 4.53268 4.68001 4.68318 4.76603 4.86627 4.95277 5.04098 5.10545 5.12279 5.22918 5.41870 5.42454 5.50599 5.63295 5.68605 5.70918 6.12397 6.35837 6.50160 6.85900 6.99727 7.12738 7.18408 7.81147 8.32011 9.16717 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015315 B = 0.002718 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.866862 B =10301.036360 C =11339.088350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.044 4.044 3 Si 0.964 3.036 4 H -0.281 1.281 5 H -0.296 1.296 6 H -0.276 1.276 7 C -0.267 4.267 8 H 0.069 0.931 9 N -0.602 5.602 10 C 0.185 3.815 11 C -0.139 4.139 12 C 0.167 3.833 13 H 0.072 0.928 14 N -0.701 5.701 15 C 0.520 3.480 16 O -0.581 6.581 17 C -0.143 4.143 18 C 0.113 3.887 19 N -0.493 5.493 20 C 0.126 3.874 21 C -0.227 4.227 22 C 0.008 3.992 23 C -0.281 4.281 24 C 0.491 3.509 25 O -0.613 6.613 26 C 0.093 3.907 27 H 0.069 0.931 28 O -0.573 6.573 29 C 0.119 3.881 30 H 0.250 0.750 31 H 0.055 0.945 32 H 0.009 0.991 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.406 0.594 36 H 0.124 0.876 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.196 0.804 41 H 0.182 0.818 42 H 0.169 0.831 43 H 0.145 0.855 44 H 0.395 0.605 45 H 0.067 0.933 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.403 -11.111 1.484 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.240 4.240 3 Si 0.792 3.208 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.202 1.202 7 C -0.397 4.397 8 H 0.087 0.913 9 N -0.327 5.327 10 C 0.060 3.940 11 C -0.179 4.179 12 C 0.062 3.938 13 H 0.090 0.910 14 N -0.351 5.351 15 C 0.306 3.694 16 O -0.462 6.462 17 C -0.183 4.183 18 C -0.009 4.009 19 N -0.202 5.202 20 C 0.000 4.000 21 C -0.249 4.249 22 C -0.014 4.014 23 C -0.302 4.302 24 C 0.296 3.704 25 O -0.501 6.501 26 C 0.032 3.968 27 H 0.087 0.913 28 O -0.380 6.380 29 C -0.007 4.007 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.243 0.757 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.138 0.862 40 H 0.213 0.787 41 H 0.199 0.801 42 H 0.186 0.814 43 H 0.163 0.837 44 H 0.245 0.755 45 H 0.085 0.915 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -12.377 -11.705 0.168 17.036 hybrid contribution 1.110 1.112 0.749 1.741 sum -11.267 -10.593 0.918 15.492 Atomic orbital electron populations 1.70152 1.06474 1.25962 1.54758 1.25715 0.96003 1.01263 1.01002 0.85407 0.77629 0.79523 0.78231 1.20682 1.22193 1.20168 1.19447 0.93073 0.85813 1.41328 0.91294 1.44171 1.35914 1.01737 1.50837 1.20507 0.88051 0.97162 0.88318 1.22387 1.01520 0.94874 0.99105 1.20708 0.84795 0.95097 0.93185 0.90994 1.45909 1.19401 1.58030 1.11800 1.20659 0.83871 0.76674 0.88153 1.90667 1.80551 1.58597 1.16359 1.21846 0.94291 1.03052 0.99148 1.21577 0.85880 1.00781 0.92669 1.45588 1.18201 1.13839 1.42546 1.22763 0.85633 0.96528 0.95042 1.21203 1.00993 0.98502 1.04220 1.21889 0.96133 0.92098 0.91276 1.22122 0.96065 1.03929 1.08133 1.17742 0.89304 0.81036 0.82291 1.90935 1.38660 1.55942 1.64547 1.22380 0.95759 0.83198 0.95436 0.91316 1.86469 1.51982 1.28770 1.70783 1.21647 0.98748 0.86252 0.94036 0.94048 0.92642 0.97323 0.91436 0.91891 0.75717 0.85809 0.88700 0.90406 0.86219 0.78715 0.80070 0.81366 0.83709 0.75516 0.91476 0.95629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.47 11.19 21.65 0.24 -51.22 16 2 C -0.04 -2.29 4.91 84.86 0.42 -1.87 16 3 Si 0.96 42.57 29.59 68.60 2.03 44.60 16 4 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 5 H -0.30 -13.23 7.11 99.48 0.71 -12.53 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.27 -13.60 9.58 84.03 0.81 -12.80 16 8 H 0.07 3.41 7.89 -2.91 -0.02 3.38 16 9 N -0.60 -27.46 2.99 -699.11 -2.09 -29.56 16 10 C 0.19 8.30 5.05 86.36 0.44 8.73 16 11 C -0.14 -5.22 5.77 30.67 0.18 -5.04 16 12 C 0.17 5.75 2.47 45.01 0.11 5.86 16 13 H 0.07 2.63 7.58 -2.39 -0.02 2.61 16 14 N -0.70 -22.29 4.15 -442.41 -1.84 -24.13 16 15 C 0.52 16.25 7.79 87.66 0.68 16.93 16 16 O -0.58 -21.66 15.64 -3.04 -0.05 -21.71 16 17 C -0.14 -3.40 6.02 29.85 0.18 -3.22 16 18 C 0.11 2.62 4.62 86.38 0.40 3.02 16 19 N -0.49 -10.16 2.58 -650.97 -1.68 -11.84 16 20 C 0.13 1.51 10.28 83.42 0.86 2.37 16 21 C -0.23 -2.00 10.01 22.08 0.22 -1.78 16 22 C 0.01 0.09 10.10 22.32 0.23 0.31 16 23 C -0.28 -5.54 9.99 22.40 0.22 -5.31 16 24 C 0.49 13.25 7.41 84.82 0.63 13.88 16 25 O -0.61 -22.67 16.64 -5.48 -0.09 -22.76 16 26 C 0.09 2.97 3.36 30.67 0.10 3.07 16 27 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 28 O -0.57 -16.01 13.21 -148.98 -1.97 -17.98 16 29 C 0.12 4.34 5.84 86.37 0.50 4.85 16 30 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 31 H 0.06 2.88 6.03 -2.39 -0.01 2.86 16 32 H 0.01 0.40 7.74 -2.39 -0.02 0.39 16 33 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.41 12.31 6.87 -92.71 -0.64 11.68 16 36 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 38 H 0.08 2.33 7.35 -2.39 -0.02 2.31 16 39 H 0.12 2.28 7.97 -2.38 -0.02 2.26 16 40 H 0.20 1.02 8.04 -2.91 -0.02 0.99 16 41 H 0.18 0.35 8.06 -2.91 -0.02 0.32 16 42 H 0.17 0.68 8.06 -2.91 -0.02 0.66 16 43 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 44 H 0.39 7.46 9.09 -74.05 -0.67 6.79 16 45 H 0.07 2.32 7.93 -2.39 -0.02 2.30 16 46 H 0.03 0.93 6.65 -2.39 -0.02 0.92 16 Total: -1.00 -76.20 376.85 0.23 -75.97 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: -0.30 Total: 29.61 kcal Atomic # 6 Polarization: 23.04 SS G_CDS: 5.97 Total: 29.01 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -5.37 Total: -116.75 kcal Atomic # 8 Polarization: -60.34 SS G_CDS: -2.11 Total: -62.44 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -76.20 0.23 -75.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099857724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.745 kcal (2) G-P(sol) polarization free energy of solvation -76.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds