Wall clock time and date at job start Tue Mar 31 2020 18:43:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86808 * 119.99513 * 2 1
4 4 H 1.48502 * 109.47087 * 272.91315 * 3 2 1
5 5 H 1.48494 * 109.47328 * 32.91073 * 3 2 1
6 6 H 1.48500 * 109.46904 * 152.91614 * 3 2 1
7 7 C 1.38811 * 120.00801 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99378 * 339.35455 * 7 2 1
9 9 N 1.36935 * 120.00128 * 159.34865 * 7 2 1
10 10 C 1.46930 * 120.62603 * 152.61871 * 9 7 2
11 11 C 1.53196 * 108.77422 * 126.41619 * 10 9 7
12 12 C 1.53042 * 109.31093 * 54.63131 * 11 10 9
13 13 H 1.09005 * 109.45711 * 58.64803 * 12 11 10
14 14 N 1.46507 * 109.45824 * 178.61293 * 12 11 10
15 15 C 1.34773 * 119.99823 * 275.00394 * 14 12 11
16 16 O 1.21273 * 120.00705 * 359.97438 * 15 14 12
17 17 C 1.50704 * 119.99534 * 180.02562 * 15 14 12
18 18 C 1.53001 * 109.46998 * 180.02562 * 17 15 14
19 19 C 1.50704 * 109.46998 * 180.02562 * 18 17 15
20 20 C 1.38824 * 120.35629 * 89.99931 * 19 18 17
21 21 C 1.38380 * 118.48669 * 180.02562 * 20 19 18
22 22 C 1.38916 * 119.11093 * 0.02562 * 21 20 19
23 23 O 1.35674 * 119.68555 * 179.97438 * 22 21 20
24 24 N 1.32246 * 120.63063 * 359.97438 * 22 21 20
25 25 C 1.31970 * 121.64779 * 359.97438 * 24 22 21
26 26 C 1.53034 * 109.54077 * 298.63629 * 12 11 10
27 27 H 1.08999 * 109.49730 * 181.31883 * 26 12 11
28 28 O 1.42898 * 109.49829 * 301.41481 * 26 12 11
29 29 C 1.46918 * 120.63397 * 332.64255 * 9 7 2
30 30 H 0.97000 * 120.00829 * 0.02562 * 1 2 3
31 31 H 1.09003 * 109.58725 * 6.63240 * 10 9 7
32 32 H 1.09002 * 109.70608 * 246.27171 * 10 9 7
33 33 H 1.08994 * 109.49513 * 294.68395 * 11 10 9
34 34 H 1.09001 * 109.52591 * 174.60129 * 11 10 9
35 35 H 0.96997 * 119.99347 * 95.00536 * 14 12 11
36 36 H 1.08999 * 109.47122 * 59.99778 * 17 15 14
37 37 H 1.08996 * 109.47194 * 299.99582 * 17 15 14
38 38 H 1.08999 * 109.47434 * 59.99885 * 18 17 15
39 39 H 1.09003 * 109.46852 * 299.99425 * 18 17 15
40 40 H 1.08005 * 120.75939 * 359.97438 * 20 19 18
41 41 H 1.08003 * 120.44366 * 180.02562 * 21 20 19
42 42 H 0.96699 * 113.99932 * 270.01821 * 23 22 21
43 43 H 1.08003 * 119.58116 * 180.02562 * 25 24 22
44 44 H 0.96695 * 114.00150 * 180.02562 * 28 26 12
45 45 H 1.09003 * 109.58658 * 353.37282 * 29 9 7
46 46 H 1.09004 * 109.58596 * 113.79894 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2500 1.6179 0.0000
4 1 2.4359 2.0822 -1.3983
5 1 1.4796 2.6342 0.7607
6 1 3.5771 1.4234 0.6375
7 6 2.0104 -1.2020 0.0005
8 1 1.5224 -2.1072 0.3308
9 7 3.3137 -1.2402 -0.4177
10 6 4.2351 -2.2628 0.0963
11 6 4.8755 -2.9904 -1.0900
12 6 5.5292 -1.9652 -2.0195
13 1 6.2782 -1.3989 -1.4659
14 7 6.1713 -2.6602 -3.1381
15 6 7.4222 -3.1432 -3.0025
16 8 8.0166 -3.0022 -1.9549
17 6 8.0828 -3.8576 -4.1533
18 6 9.4870 -4.3021 -3.7392
19 6 10.1479 -5.0159 -4.8902
20 6 10.9004 -4.3067 -5.8166
21 6 11.4896 -5.0010 -6.8585
22 6 11.3090 -6.3758 -6.9422
23 8 11.8810 -7.0680 -7.9592
24 7 10.5847 -7.0164 -6.0399
25 6 10.0114 -6.3819 -5.0347
26 6 4.4626 -1.0091 -2.5580
27 1 4.9251 -0.2939 -3.2381
28 8 3.4629 -1.7542 -3.2561
29 6 3.8175 -0.2591 -1.3884
30 1 -0.4851 0.8400 -0.0004
31 1 3.6840 -2.9767 0.7085
32 1 5.0117 -1.7893 0.6969
33 1 4.1091 -3.5401 -1.6364
34 1 5.6319 -3.6856 -0.7258
35 1 5.6960 -2.7727 -3.9761
36 1 8.1516 -3.1842 -5.0076
37 1 7.4913 -4.7315 -4.4262
38 1 9.4178 -4.9756 -2.8850
39 1 10.0789 -3.4284 -3.4660
40 1 11.0224 -3.2374 -5.7266
41 1 12.0821 -4.4810 -7.5968
42 1 11.3238 -7.1435 -8.7459
43 1 9.4274 -6.9384 -4.3166
44 1 2.7536 -1.2107 -3.6256
45 1 2.9909 0.3491 -1.7557
46 1 4.5599 0.3800 -0.9102
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001099970409.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:43:48
Heat of formation + Delta-G solvation = -68.205641 kcal
Electronic energy + Delta-G solvation = -28454.444227 eV
Core-core repulsion = 24345.032874 eV
Total energy + Delta-G solvation = -4109.411353 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.92958 -39.97920 -38.34662 -37.63894 -35.04386 -34.64340 -34.29544 -32.56308
-32.14191 -30.45808 -29.71424 -29.10530 -25.72822 -24.48386 -24.14446 -23.03351
-22.18473 -21.55726 -20.22808 -19.62180 -19.25229 -17.57131 -17.37022 -17.09178
-16.48475 -16.36676 -15.65296 -15.59497 -15.38568 -15.16792 -14.66052 -14.34780
-14.24849 -14.04710 -13.75973 -13.61423 -13.32592 -13.15924 -12.73299 -12.63790
-12.45313 -12.35798 -12.27695 -11.97497 -11.73123 -11.51015 -11.38077 -11.01886
-10.74994 -10.48640 -10.32151 -10.30998 -10.12926 -9.85990 -9.80516 -9.54040
-9.44327 -9.15346 -8.83390 -8.66549 -7.01707 -5.99388 -3.34246 0.53355
0.78600 2.64763 3.00246 3.21023 3.24758 3.39123 3.42946 3.44774
4.21492 4.32770 4.45105 4.48123 4.53019 4.57316 4.66323 4.79783
4.86644 4.92507 5.05774 5.13504 5.21015 5.28769 5.30003 5.31298
5.48867 5.53915 5.59908 5.70333 5.78404 5.89575 5.94722 6.06348
6.10077 6.21110 6.26049 6.35158 6.43498 6.62178 6.69625 6.93670
7.03599 7.49611 7.59804 7.87887 8.06623 8.27122 8.28925 8.88386
9.66306 10.03519 11.16615
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.032929 B = 0.001978 C = 0.001971
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 850.101252 B =14153.160188 C =14202.889350
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.907 5.907
2 C 0.021 3.979
3 Si 0.879 3.121
4 H -0.291 1.291
5 H -0.302 1.302
6 H -0.271 1.271
7 C -0.251 4.251
8 H 0.086 0.914
9 N -0.595 5.595
10 C 0.151 3.849
11 C -0.138 4.138
12 C 0.161 3.839
13 H 0.091 0.909
14 N -0.719 5.719
15 C 0.509 3.491
16 O -0.544 6.544
17 C -0.136 4.136
18 C -0.060 4.060
19 C -0.140 4.140
20 C -0.057 4.057
21 C -0.183 4.183
22 C 0.301 3.699
23 O -0.484 6.484
24 N -0.502 5.502
25 C 0.128 3.872
26 C 0.082 3.918
27 H 0.047 0.953
28 O -0.553 6.553
29 C 0.098 3.902
30 H 0.262 0.738
31 H 0.067 0.933
32 H 0.024 0.976
33 H 0.074 0.926
34 H 0.057 0.943
35 H 0.403 0.597
36 H 0.092 0.908
37 H 0.095 0.905
38 H 0.087 0.913
39 H 0.085 0.915
40 H 0.141 0.859
41 H 0.140 0.860
42 H 0.400 0.600
43 H 0.162 0.838
44 H 0.379 0.621
45 H 0.080 0.920
46 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.876 -7.434 -16.058 26.612
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.550 5.550
2 C -0.178 4.178
3 Si 0.710 3.290
4 H -0.220 1.220
5 H -0.230 1.230
6 H -0.196 1.196
7 C -0.379 4.379
8 H 0.104 0.896
9 N -0.318 5.318
10 C 0.024 3.976
11 C -0.178 4.178
12 C 0.057 3.943
13 H 0.109 0.891
14 N -0.369 5.369
15 C 0.295 3.705
16 O -0.422 6.422
17 C -0.176 4.176
18 C -0.098 4.098
19 C -0.142 4.142
20 C -0.083 4.083
21 C -0.204 4.204
22 C 0.123 3.877
23 O -0.291 6.291
24 N -0.220 5.220
25 C -0.029 4.029
26 C 0.020 3.980
27 H 0.065 0.935
28 O -0.359 6.359
29 C -0.029 4.029
30 H 0.072 0.928
31 H 0.085 0.915
32 H 0.042 0.958
33 H 0.092 0.908
34 H 0.076 0.924
35 H 0.237 0.763
36 H 0.110 0.890
37 H 0.113 0.887
38 H 0.106 0.894
39 H 0.103 0.897
40 H 0.158 0.842
41 H 0.158 0.842
42 H 0.257 0.743
43 H 0.179 0.821
44 H 0.226 0.774
45 H 0.098 0.902
46 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges 20.917 -8.707 -14.845 27.087
hybrid contribution -0.447 2.385 -0.976 2.616
sum 20.470 -6.321 -15.821 26.633
Atomic orbital electron populations
1.69833 1.05642 1.26458 1.53116 1.25281 0.95230 0.97373 0.99911
0.87021 0.80199 0.84979 0.76833 1.21957 1.23019 1.19562 1.18918
0.84891 0.94724 1.39404 0.89624 1.44199 1.08768 1.33076 1.45793
1.20920 0.92263 0.91291 0.93103 1.22299 0.99673 0.97948 0.97858
1.20966 0.92750 0.93413 0.87158 0.89110 1.46191 1.15308 1.58045
1.17395 1.20591 0.81588 0.78976 0.89354 1.90709 1.64055 1.57956
1.29485 1.21666 0.96658 1.01580 0.97693 1.20263 0.93905 1.00925
0.94720 1.20983 0.99676 0.95384 0.98194 1.21485 0.93813 1.00756
0.92222 1.22123 1.03085 0.93928 1.01277 1.19211 0.91857 0.87074
0.89593 1.84785 1.42992 1.76526 1.24839 1.67192 1.08852 1.41748
1.04169 1.22512 0.95210 0.91243 0.93928 1.22556 0.88756 0.92613
0.94042 0.93488 1.86379 1.37741 1.38020 1.73749 1.22049 0.97999
0.92582 0.90271 0.92786 0.91478 0.95767 0.90768 0.92422 0.76267
0.88960 0.88696 0.89447 0.89690 0.84157 0.84178 0.74257 0.82087
0.77410 0.90212 0.94892
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -27.06 13.97 55.49 0.78 -26.28 16
2 C 0.02 0.58 5.23 -17.43 -0.09 0.48 16
3 Si 0.88 21.51 24.35 -169.99 -4.14 17.37 16
4 H -0.29 -6.74 6.62 56.52 0.37 -6.36 16
5 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16
6 H -0.27 -6.57 6.64 56.52 0.38 -6.19 16
7 C -0.25 -6.80 10.03 -15.06 -0.15 -6.96 16
8 H 0.09 2.52 8.06 -52.48 -0.42 2.09 16
9 N -0.60 -13.62 2.71 -172.32 -0.47 -14.09 16
10 C 0.15 2.99 6.52 -3.71 -0.02 2.96 16
11 C -0.14 -2.37 5.51 -26.61 -0.15 -2.51 16
12 C 0.16 2.52 2.20 -67.89 -0.15 2.37 16
13 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16
14 N -0.72 -8.92 5.05 -53.76 -0.27 -9.19 16
15 C 0.51 6.13 7.79 -10.99 -0.09 6.05 16
16 O -0.54 -8.61 15.64 5.56 0.09 -8.52 16
17 C -0.14 -1.05 5.68 -27.88 -0.16 -1.20 16
18 C -0.06 -0.46 4.66 -27.88 -0.13 -0.59 16
19 C -0.14 -1.04 5.15 -104.48 -0.54 -1.58 16
20 C -0.06 -0.38 9.85 -39.31 -0.39 -0.76 16
21 C -0.18 -1.27 10.04 -39.28 -0.39 -1.66 16
22 C 0.30 2.68 7.74 -17.12 -0.13 2.54 16
23 O -0.48 -3.71 13.56 -18.72 -0.25 -3.97 16
24 N -0.50 -5.13 10.39 -13.33 -0.14 -5.26 16
25 C 0.13 1.07 10.85 -17.56 -0.19 0.88 16
26 C 0.08 1.32 3.38 -26.62 -0.09 1.23 16
27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
28 O -0.55 -8.95 12.08 -35.23 -0.43 -9.37 16
29 C 0.10 1.99 3.84 -3.72 -0.01 1.97 16
30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
31 H 0.07 1.34 7.93 -51.93 -0.41 0.92 16
32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.07 1.37 7.61 -51.93 -0.40 0.98 16
34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
35 H 0.40 4.27 8.26 -40.82 -0.34 3.93 16
36 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16
37 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16
38 H 0.09 0.74 8.05 -51.93 -0.42 0.32 16
39 H 0.08 0.70 8.05 -51.93 -0.42 0.28 16
40 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16
41 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16
42 H 0.40 1.04 9.06 45.56 0.41 1.45 16
43 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16
44 H 0.38 5.36 9.08 45.56 0.41 5.77 16
45 H 0.08 1.74 4.50 -51.93 -0.23 1.51 16
46 H 0.03 0.67 7.08 -51.93 -0.37 0.30 16
LS Contribution 375.05 15.07 5.65 5.65
Total: -1.00 -35.15 375.05 -7.01 -42.15
By element:
Atomic # 1 Polarization: 13.42 SS G_CDS: -5.14 Total: 8.28 kcal
Atomic # 6 Polarization: 5.92 SS G_CDS: -2.68 Total: 3.23 kcal
Atomic # 7 Polarization: -54.73 SS G_CDS: -0.10 Total: -54.83 kcal
Atomic # 8 Polarization: -21.27 SS G_CDS: -0.59 Total: -21.86 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -4.14 Total: 17.37 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -35.15 -7.01 -42.15 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001099970409.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.051 kcal
(2) G-P(sol) polarization free energy of solvation -35.148 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.199 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.007 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.206 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds