Wall clock time and date at job start Tue Mar 31 2020 18:43:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86808 * 119.99513 * 2 1
4 4 H 1.48502 * 109.47087 * 272.91315 * 3 2 1
5 5 H 1.48494 * 109.47328 * 32.91073 * 3 2 1
6 6 H 1.48500 * 109.46904 * 152.91614 * 3 2 1
7 7 C 1.38811 * 120.00801 * 179.97438 * 2 1 3
8 8 H 1.08005 * 119.99378 * 339.35455 * 7 2 1
9 9 N 1.36935 * 120.00128 * 159.34865 * 7 2 1
10 10 C 1.46930 * 120.62603 * 152.61871 * 9 7 2
11 11 C 1.53196 * 108.77422 * 126.41619 * 10 9 7
12 12 C 1.53042 * 109.31093 * 54.63131 * 11 10 9
13 13 H 1.09005 * 109.45711 * 58.64803 * 12 11 10
14 14 N 1.46507 * 109.45824 * 178.61293 * 12 11 10
15 15 C 1.34773 * 119.99823 * 275.00394 * 14 12 11
16 16 O 1.21273 * 120.00705 * 359.97438 * 15 14 12
17 17 C 1.50704 * 119.99534 * 180.02562 * 15 14 12
18 18 C 1.53001 * 109.46998 * 180.02562 * 17 15 14
19 19 C 1.50704 * 109.46998 * 180.02562 * 18 17 15
20 20 C 1.38824 * 120.35629 * 89.99931 * 19 18 17
21 21 C 1.38380 * 118.48669 * 180.02562 * 20 19 18
22 22 C 1.38916 * 119.11093 * 0.02562 * 21 20 19
23 23 O 1.35674 * 119.68555 * 179.97438 * 22 21 20
24 24 N 1.32246 * 120.63063 * 359.97438 * 22 21 20
25 25 C 1.31970 * 121.64779 * 359.97438 * 24 22 21
26 26 C 1.53034 * 109.54077 * 298.63629 * 12 11 10
27 27 H 1.08999 * 109.49730 * 181.31883 * 26 12 11
28 28 O 1.42898 * 109.49829 * 301.41481 * 26 12 11
29 29 C 1.46918 * 120.63397 * 332.64255 * 9 7 2
30 30 H 0.97000 * 120.00829 * 0.02562 * 1 2 3
31 31 H 1.09003 * 109.58725 * 6.63240 * 10 9 7
32 32 H 1.09002 * 109.70608 * 246.27171 * 10 9 7
33 33 H 1.08994 * 109.49513 * 294.68395 * 11 10 9
34 34 H 1.09001 * 109.52591 * 174.60129 * 11 10 9
35 35 H 0.96997 * 119.99347 * 95.00536 * 14 12 11
36 36 H 1.08999 * 109.47122 * 59.99778 * 17 15 14
37 37 H 1.08996 * 109.47194 * 299.99582 * 17 15 14
38 38 H 1.08999 * 109.47434 * 59.99885 * 18 17 15
39 39 H 1.09003 * 109.46852 * 299.99425 * 18 17 15
40 40 H 1.08005 * 120.75939 * 359.97438 * 20 19 18
41 41 H 1.08003 * 120.44366 * 180.02562 * 21 20 19
42 42 H 0.96699 * 113.99932 * 270.01821 * 23 22 21
43 43 H 1.08003 * 119.58116 * 180.02562 * 25 24 22
44 44 H 0.96695 * 114.00150 * 180.02562 * 28 26 12
45 45 H 1.09003 * 109.58658 * 353.37282 * 29 9 7
46 46 H 1.09004 * 109.58596 * 113.79894 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2500 1.6179 0.0000
4 1 2.4359 2.0822 -1.3983
5 1 1.4796 2.6342 0.7607
6 1 3.5771 1.4234 0.6375
7 6 2.0104 -1.2020 0.0005
8 1 1.5224 -2.1072 0.3308
9 7 3.3137 -1.2402 -0.4177
10 6 4.2351 -2.2628 0.0963
11 6 4.8755 -2.9904 -1.0900
12 6 5.5292 -1.9652 -2.0195
13 1 6.2782 -1.3989 -1.4659
14 7 6.1713 -2.6602 -3.1381
15 6 7.4222 -3.1432 -3.0025
16 8 8.0166 -3.0022 -1.9549
17 6 8.0828 -3.8576 -4.1533
18 6 9.4870 -4.3021 -3.7392
19 6 10.1479 -5.0159 -4.8902
20 6 10.9004 -4.3067 -5.8166
21 6 11.4896 -5.0010 -6.8585
22 6 11.3090 -6.3758 -6.9422
23 8 11.8810 -7.0680 -7.9592
24 7 10.5847 -7.0164 -6.0399
25 6 10.0114 -6.3819 -5.0347
26 6 4.4626 -1.0091 -2.5580
27 1 4.9251 -0.2939 -3.2381
28 8 3.4629 -1.7542 -3.2561
29 6 3.8175 -0.2591 -1.3884
30 1 -0.4851 0.8400 -0.0004
31 1 3.6840 -2.9767 0.7085
32 1 5.0117 -1.7893 0.6969
33 1 4.1091 -3.5401 -1.6364
34 1 5.6319 -3.6856 -0.7258
35 1 5.6960 -2.7727 -3.9761
36 1 8.1516 -3.1842 -5.0076
37 1 7.4913 -4.7315 -4.4262
38 1 9.4178 -4.9756 -2.8850
39 1 10.0789 -3.4284 -3.4660
40 1 11.0224 -3.2374 -5.7266
41 1 12.0821 -4.4810 -7.5968
42 1 11.3238 -7.1435 -8.7459
43 1 9.4274 -6.9384 -4.3166
44 1 2.7536 -1.2107 -3.6256
45 1 2.9909 0.3491 -1.7557
46 1 4.5599 0.3800 -0.9102
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001099970409.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:43:48
Heat of formation + Delta-G solvation = -99.805725 kcal
Electronic energy + Delta-G solvation = -28455.814510 eV
Core-core repulsion = 24345.032874 eV
Total energy + Delta-G solvation = -4110.781635 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.51650 -41.05226 -39.62876 -38.21625 -36.60765 -35.75110 -35.05917 -34.01554
-33.08131 -31.90465 -31.00230 -30.09422 -27.08966 -25.59741 -24.68550 -24.51045
-23.42031 -22.55590 -21.25154 -20.98748 -19.77690 -19.23384 -18.09184 -17.93424
-17.81906 -17.24995 -16.95807 -16.74278 -16.35374 -16.09296 -15.92877 -15.67200
-15.20374 -15.16848 -15.01487 -14.51632 -14.34917 -14.12779 -14.00413 -13.97828
-13.94150 -13.44204 -13.07149 -13.00934 -12.84997 -12.65011 -12.54542 -12.40578
-12.16738 -11.99630 -11.95256 -11.85194 -11.37204 -10.95223 -10.91279 -10.80431
-10.58439 -10.39089 -9.97477 -9.72272 -8.91809 -8.14202 -5.45859 -0.00678
0.26504 1.26805 1.43810 1.51551 1.72328 2.21208 2.40997 2.58686
2.84265 3.02150 3.30161 3.39446 3.64556 3.75561 3.78233 3.93804
3.96633 4.01961 4.05156 4.15476 4.25880 4.26967 4.32901 4.51216
4.53562 4.64266 4.70705 4.74426 4.76064 4.77819 4.86568 4.95477
5.00117 5.04099 5.04974 5.21290 5.35545 5.43985 5.55135 5.62174
5.86438 6.13681 6.63892 6.66407 6.83305 6.94527 6.95783 7.34353
7.61672 8.01737 9.05695
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.032929 B = 0.001978 C = 0.001971
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 850.101252 B =14153.160188 C =14202.889350
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.956 5.956
2 C -0.035 4.035
3 Si 0.945 3.055
4 H -0.265 1.265
5 H -0.314 1.314
6 H -0.266 1.266
7 C -0.240 4.240
8 H 0.046 0.954
9 N -0.608 5.608
10 C 0.146 3.854
11 C -0.123 4.123
12 C 0.166 3.834
13 H 0.084 0.916
14 N -0.711 5.711
15 C 0.509 3.491
16 O -0.583 6.583
17 C -0.125 4.125
18 C -0.053 4.053
19 C -0.138 4.138
20 C -0.054 4.054
21 C -0.181 4.181
22 C 0.285 3.715
23 O -0.498 6.498
24 N -0.536 5.536
25 C 0.116 3.884
26 C 0.094 3.906
27 H 0.084 0.916
28 O -0.561 6.561
29 C 0.089 3.911
30 H 0.261 0.739
31 H 0.054 0.946
32 H 0.032 0.968
33 H 0.060 0.940
34 H 0.063 0.937
35 H 0.415 0.585
36 H 0.119 0.881
37 H 0.111 0.889
38 H 0.076 0.924
39 H 0.082 0.918
40 H 0.165 0.835
41 H 0.162 0.838
42 H 0.418 0.582
43 H 0.170 0.830
44 H 0.388 0.612
45 H 0.066 0.934
46 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.264 -6.360 -18.329 29.531
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.602 5.602
2 C -0.229 4.229
3 Si 0.774 3.226
4 H -0.192 1.192
5 H -0.243 1.243
6 H -0.191 1.191
7 C -0.370 4.370
8 H 0.064 0.936
9 N -0.332 5.332
10 C 0.020 3.980
11 C -0.163 4.163
12 C 0.061 3.939
13 H 0.102 0.898
14 N -0.362 5.362
15 C 0.297 3.703
16 O -0.464 6.464
17 C -0.164 4.164
18 C -0.091 4.091
19 C -0.140 4.140
20 C -0.080 4.080
21 C -0.202 4.202
22 C 0.107 3.893
23 O -0.308 6.308
24 N -0.255 5.255
25 C -0.040 4.040
26 C 0.032 3.968
27 H 0.101 0.899
28 O -0.368 6.368
29 C -0.037 4.037
30 H 0.070 0.930
31 H 0.073 0.927
32 H 0.050 0.950
33 H 0.078 0.922
34 H 0.082 0.918
35 H 0.251 0.749
36 H 0.137 0.863
37 H 0.129 0.871
38 H 0.094 0.906
39 H 0.100 0.900
40 H 0.183 0.817
41 H 0.180 0.820
42 H 0.279 0.721
43 H 0.187 0.813
44 H 0.237 0.763
45 H 0.084 0.916
46 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 23.337 -7.651 -17.186 29.975
hybrid contribution -1.166 1.928 -0.263 2.268
sum 22.171 -5.723 -17.449 28.789
Atomic orbital electron populations
1.69967 1.07397 1.27159 1.55701 1.25867 0.95793 1.00719 1.00529
0.85947 0.78490 0.80197 0.77955 1.19160 1.24339 1.19053 1.18771
0.86568 0.93357 1.38323 0.93609 1.44258 1.07673 1.34242 1.47003
1.21024 0.91874 0.90735 0.94351 1.22085 0.99201 0.98049 0.96975
1.20689 0.92487 0.92917 0.87844 0.89803 1.46023 1.15534 1.57762
1.16889 1.21310 0.80995 0.78131 0.89863 1.90702 1.64875 1.59376
1.31407 1.21661 0.96166 1.02161 0.96421 1.20156 0.93984 1.00519
0.94467 1.20906 0.99934 0.94922 0.98216 1.21797 0.92785 1.01935
0.91435 1.22340 1.02883 0.93164 1.01767 1.19510 0.92012 0.88004
0.89763 1.84734 1.43858 1.76628 1.25567 1.67165 1.10165 1.42953
1.05210 1.22722 0.95450 0.91962 0.93908 1.22409 0.88562 0.92905
0.92882 0.89879 1.86363 1.38235 1.38631 1.73564 1.22182 0.97816
0.92466 0.91222 0.92973 0.92714 0.94982 0.92153 0.91816 0.74857
0.86282 0.87061 0.90554 0.89987 0.81716 0.82026 0.72118 0.81282
0.76339 0.91629 0.94190
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -58.58 13.97 21.65 0.30 -58.28 16
2 C -0.03 -1.95 5.23 84.86 0.44 -1.51 16
3 Si 0.95 44.43 24.35 68.60 1.67 46.10 16
4 H -0.27 -11.25 6.62 99.48 0.66 -10.59 16
5 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16
6 H -0.27 -12.15 6.64 99.48 0.66 -11.49 16
7 C -0.24 -13.34 10.03 84.03 0.84 -12.50 16
8 H 0.05 2.84 8.06 -2.91 -0.02 2.82 16
9 N -0.61 -27.60 2.71 -699.09 -1.89 -29.50 16
10 C 0.15 5.76 6.52 86.36 0.56 6.32 16
11 C -0.12 -4.09 5.51 30.67 0.17 -3.92 16
12 C 0.17 4.78 2.20 45.02 0.10 4.87 16
13 H 0.08 2.60 7.58 -2.38 -0.02 2.59 16
14 N -0.71 -15.38 5.05 -442.40 -2.23 -17.62 16
15 C 0.51 10.80 7.79 87.66 0.68 11.49 16
16 O -0.58 -17.32 15.64 -3.01 -0.05 -17.37 16
17 C -0.12 -1.48 5.68 29.85 0.17 -1.31 16
18 C -0.05 -0.69 4.66 29.85 0.14 -0.55 16
19 C -0.14 -1.71 5.15 -19.77 -0.10 -1.81 16
20 C -0.05 -0.54 9.85 22.44 0.22 -0.32 16
21 C -0.18 -2.05 10.04 22.47 0.23 -1.82 16
22 C 0.29 4.68 7.74 84.79 0.66 5.33 16
23 O -0.50 -7.07 13.56 -89.91 -1.22 -8.29 16
24 N -0.54 -10.50 10.39 -308.96 -3.21 -13.71 16
25 C 0.12 1.80 10.85 84.63 0.92 2.72 16
26 C 0.09 2.74 3.38 30.67 0.10 2.85 16
27 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16
28 O -0.56 -16.77 12.08 -148.98 -1.80 -18.58 16
29 C 0.09 3.42 3.84 86.36 0.33 3.76 16
30 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16
31 H 0.05 2.24 7.93 -2.39 -0.02 2.22 16
32 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16
33 H 0.06 2.18 7.61 -2.39 -0.02 2.16 16
34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16
35 H 0.41 7.21 8.26 -92.71 -0.77 6.44 16
36 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16
37 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16
38 H 0.08 1.17 8.05 -2.39 -0.02 1.15 16
39 H 0.08 1.14 8.05 -2.39 -0.02 1.12 16
40 H 0.17 0.81 8.06 -2.91 -0.02 0.79 16
41 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16
42 H 0.42 1.69 9.06 -74.06 -0.67 1.02 16
43 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16
44 H 0.39 10.10 9.08 -74.06 -0.67 9.43 16
45 H 0.07 2.71 4.50 -2.39 -0.01 2.70 16
46 H 0.04 1.50 7.08 -2.38 -0.02 1.49 16
Total: -1.00 -77.77 375.05 -4.13 -81.90
By element:
Atomic # 1 Polarization: 22.91 SS G_CDS: -1.17 Total: 21.75 kcal
Atomic # 6 Polarization: 8.12 SS G_CDS: 5.47 Total: 13.58 kcal
Atomic # 7 Polarization: -112.06 SS G_CDS: -7.04 Total: -119.10 kcal
Atomic # 8 Polarization: -41.17 SS G_CDS: -3.07 Total: -44.24 kcal
Atomic # 14 Polarization: 44.43 SS G_CDS: 1.67 Total: 46.10 kcal
Total: -77.77 -4.13 -81.90 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001099970409.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -17.905 kcal
(2) G-P(sol) polarization free energy of solvation -77.767 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.672 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.134 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.901 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.806 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds