Wall clock time and date at job start Tue Mar 31 2020 18:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48500 * 109.47022 * 269.99809 * 3 2 1 5 5 H 1.48500 * 109.47279 * 30.00180 * 3 2 1 6 6 H 1.48508 * 109.46825 * 149.99954 * 3 2 1 7 7 C 1.38808 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00328 * 197.36237 * 7 2 1 9 9 N 1.36942 * 119.99666 * 17.36756 * 7 2 1 10 10 C 1.46927 * 120.63406 * 27.68404 * 9 7 2 11 11 C 1.53196 * 108.77527 * 126.37096 * 10 9 7 12 12 C 1.53035 * 109.31074 * 54.63752 * 11 10 9 13 13 H 1.09003 * 109.45595 * 178.62872 * 12 11 10 14 14 N 1.46490 * 109.46482 * 58.65347 * 12 11 10 15 15 C 1.34779 * 120.00121 * 84.99752 * 14 12 11 16 16 O 1.21277 * 119.99809 * 0.02562 * 15 14 12 17 17 C 1.50705 * 120.00162 * 180.02562 * 15 14 12 18 18 C 1.52997 * 109.46988 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47227 * 179.97438 * 18 17 15 20 20 C 1.38829 * 120.35257 * 89.99720 * 19 18 17 21 21 C 1.38381 * 118.48733 * 179.97438 * 20 19 18 22 22 C 1.38918 * 119.10878 * 0.02562 * 21 20 19 23 23 O 1.35679 * 119.68415 * 179.97438 * 22 21 20 24 24 N 1.32250 * 120.63300 * 0.25045 * 22 21 20 25 25 C 1.31969 * 121.64294 * 359.48237 * 24 22 21 26 26 C 1.53048 * 109.53906 * 298.62922 * 12 11 10 27 27 H 1.08997 * 109.49621 * 301.42231 * 26 12 11 28 28 O 1.42896 * 109.49758 * 181.32069 * 26 12 11 29 29 C 1.46926 * 120.62576 * 207.66097 * 9 7 2 30 30 H 0.97001 * 120.00585 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58203 * 6.58195 * 10 9 7 32 32 H 1.09001 * 109.58174 * 246.15922 * 10 9 7 33 33 H 1.09000 * 109.49155 * 294.68206 * 11 10 9 34 34 H 1.08994 * 109.49261 * 174.58789 * 11 10 9 35 35 H 0.97007 * 120.00383 * 265.00202 * 14 12 11 36 36 H 1.08994 * 109.47001 * 59.99582 * 17 15 14 37 37 H 1.08996 * 109.46765 * 300.00000 * 17 15 14 38 38 H 1.09003 * 109.47395 * 60.00197 * 18 17 15 39 39 H 1.09002 * 109.47462 * 300.00084 * 18 17 15 40 40 H 1.08004 * 120.75970 * 0.02562 * 20 19 18 41 41 H 1.07996 * 120.44603 * 180.02562 * 21 20 19 42 42 H 0.96698 * 114.00454 * 89.99541 * 23 22 21 43 43 H 1.07999 * 119.57775 * 180.26810 * 25 24 22 44 44 H 0.96702 * 113.99623 * 180.02562 * 28 26 12 45 45 H 1.08994 * 109.59204 * 353.41599 * 29 9 7 46 46 H 1.09002 * 109.58321 * 113.70100 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2796 9 7 1.3723 -2.3611 -0.3530 10 6 0.2280 -2.3349 -1.2742 11 6 0.5015 -3.3048 -2.4280 12 6 0.8197 -4.6899 -1.8602 13 1 0.9909 -5.3877 -2.6799 14 7 -0.3080 -5.1561 -1.0498 15 6 -1.3489 -5.7784 -1.6379 16 8 -1.3516 -5.9528 -2.8381 17 6 -2.5093 -6.2574 -0.8042 18 6 -3.5473 -6.9233 -1.7098 19 6 -4.7074 -7.4029 -0.8761 20 6 -5.7928 -6.5703 -0.6393 21 6 -6.8372 -7.0504 0.1311 22 6 -6.7646 -8.3414 0.6389 23 8 -7.7819 -8.8237 1.3961 24 7 -5.7110 -9.1028 0.3959 25 6 -4.7022 -8.6747 -0.3393 26 6 2.0752 -4.6098 -0.9887 27 1 2.9090 -4.2394 -1.5851 28 8 2.3892 -5.9092 -0.4839 29 6 1.8196 -3.6546 0.1814 30 1 -0.4851 0.8400 0.0004 31 1 0.0985 -1.3266 -1.6672 32 1 -0.6742 -2.6418 -0.7449 33 1 1.3502 -2.9467 -3.0108 34 1 -0.3791 -3.3672 -3.0673 35 1 -0.3058 -5.0168 -0.0897 36 1 -2.9643 -5.4090 -0.2932 37 1 -2.1542 -6.9776 -0.0671 38 1 -3.0926 -7.7718 -2.2211 39 1 -3.9023 -6.2027 -2.4466 40 1 -5.8217 -5.5708 -1.0477 41 1 -7.6973 -6.4297 0.3348 42 1 -8.4721 -9.2718 0.8883 43 1 -3.8601 -9.3263 -0.5202 44 1 3.1754 -5.9333 0.0785 45 1 2.7401 -3.5171 0.7486 46 1 1.0482 -4.0679 0.8313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099970410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:52 Heat of formation + Delta-G solvation = -74.479077 kcal Electronic energy + Delta-G solvation = -28796.709394 eV Core-core repulsion = 24687.026005 eV Total energy + Delta-G solvation = -4109.683389 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.76595 -39.84747 -38.08573 -37.46264 -35.47777 -34.32564 -33.97683 -32.37938 -31.76700 -30.40126 -29.38268 -28.50384 -25.57746 -24.75860 -23.98385 -22.43642 -22.10208 -21.72481 -20.34382 -19.10483 -18.75087 -17.29873 -17.20035 -17.06468 -16.54118 -16.26915 -15.50816 -15.31547 -15.14223 -14.96221 -14.56424 -14.25720 -13.92906 -13.83469 -13.49907 -13.49759 -13.34263 -13.11204 -12.66293 -12.31971 -12.16874 -12.14162 -12.02525 -11.81437 -11.67309 -11.22310 -11.14929 -10.93950 -10.70499 -10.41809 -10.23471 -10.13525 -9.99720 -9.87296 -9.69690 -9.53805 -9.46614 -8.98821 -8.62899 -8.54866 -6.82650 -5.91388 -3.35487 0.69441 0.95186 2.94138 3.18926 3.30638 3.37916 3.38729 3.43519 3.61242 4.32443 4.39152 4.47716 4.53699 4.66085 4.71876 4.88818 5.02139 5.12313 5.23506 5.25943 5.31505 5.37993 5.42875 5.54542 5.56249 5.66430 5.69261 5.72919 5.93435 5.97994 6.03046 6.09642 6.22985 6.26308 6.41094 6.51048 6.61272 6.65503 6.93027 7.17249 7.22916 7.53883 7.64116 7.67511 7.86853 7.88269 8.31179 8.54584 9.06991 9.69230 10.24306 11.16720 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.002473 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.897909 B =11321.477733 C =12380.935065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.172 3.828 11 C -0.153 4.153 12 C 0.166 3.834 13 H 0.078 0.922 14 N -0.705 5.705 15 C 0.514 3.486 16 O -0.553 6.553 17 C -0.137 4.137 18 C -0.058 4.058 19 C -0.138 4.138 20 C -0.056 4.056 21 C -0.182 4.182 22 C 0.299 3.701 23 O -0.484 6.484 24 N -0.502 5.502 25 C 0.126 3.874 26 C 0.075 3.925 27 H 0.066 0.934 28 O -0.571 6.571 29 C 0.118 3.882 30 H 0.255 0.745 31 H 0.089 0.911 32 H 0.021 0.979 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.402 0.598 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.142 0.858 41 H 0.140 0.860 42 H 0.398 0.602 43 H 0.161 0.839 44 H 0.374 0.626 45 H 0.058 0.942 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.260 -14.441 -1.405 17.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.193 4.193 12 C 0.061 3.939 13 H 0.096 0.904 14 N -0.356 5.356 15 C 0.300 3.700 16 O -0.432 6.432 17 C -0.177 4.177 18 C -0.097 4.097 19 C -0.140 4.140 20 C -0.082 4.082 21 C -0.203 4.203 22 C 0.121 3.879 23 O -0.291 6.291 24 N -0.221 5.221 25 C -0.031 4.031 26 C 0.014 3.986 27 H 0.084 0.916 28 O -0.375 6.375 29 C -0.009 4.009 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.238 0.762 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.160 0.840 41 H 0.158 0.842 42 H 0.256 0.744 43 H 0.178 0.822 44 H 0.220 0.780 45 H 0.077 0.923 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.614 -15.166 -1.729 18.040 hybrid contribution 0.562 1.827 0.275 1.931 sum -9.052 -13.339 -1.453 16.186 Atomic orbital electron populations 1.70025 1.05288 1.25732 1.53238 1.25047 0.95308 0.98519 1.00470 0.86267 0.79093 0.83449 0.77782 1.21316 1.21703 1.20400 1.19168 0.92733 0.84662 1.42294 0.91550 1.44016 1.35953 1.00884 1.50273 1.20795 0.88446 0.98408 0.87696 1.22585 1.01472 0.94848 1.00422 1.20809 0.83867 0.96341 0.92869 0.90401 1.45962 1.19632 1.58276 1.11686 1.20461 0.83549 0.77474 0.88492 1.90664 1.79874 1.57596 1.15063 1.21650 0.94694 1.02287 0.99058 1.20242 0.91650 1.01696 0.96066 1.21002 0.97241 0.95350 1.00447 1.21528 0.91790 0.99909 0.94943 1.22125 1.01447 0.97000 0.99729 1.19200 0.88398 0.89450 0.90897 1.84793 1.32275 1.77079 1.34943 1.67174 1.02026 1.38472 1.14390 1.22480 0.95307 0.93683 0.91600 1.22749 0.96218 0.82942 0.96648 0.91645 1.86478 1.50552 1.30278 1.70219 1.21534 0.98478 0.87717 0.93172 0.93487 0.89241 0.96088 0.91557 0.91871 0.76238 0.88706 0.88891 0.89665 0.89674 0.84004 0.84172 0.74435 0.82183 0.77991 0.92318 0.95972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.89 11.19 55.49 0.62 -24.27 16 2 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 3 Si 0.90 20.85 29.59 -169.99 -5.03 15.82 16 4 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.26 -6.69 9.59 -15.06 -0.14 -6.83 16 8 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -13.54 3.00 -172.32 -0.52 -14.06 16 10 C 0.17 3.86 5.05 -3.71 -0.02 3.84 16 11 C -0.15 -2.90 5.77 -26.61 -0.15 -3.06 16 12 C 0.17 2.86 2.47 -67.89 -0.17 2.69 16 13 H 0.08 1.41 7.58 -51.93 -0.39 1.02 16 14 N -0.70 -11.11 4.15 -53.77 -0.22 -11.33 16 15 C 0.51 7.77 7.79 -10.98 -0.09 7.69 16 16 O -0.55 -10.02 15.64 5.56 0.09 -9.93 16 17 C -0.14 -1.51 5.68 -27.88 -0.16 -1.67 16 18 C -0.06 -0.58 4.66 -27.89 -0.13 -0.71 16 19 C -0.14 -1.31 5.15 -104.48 -0.54 -1.85 16 20 C -0.06 -0.50 9.85 -39.31 -0.39 -0.88 16 21 C -0.18 -1.62 10.04 -39.28 -0.39 -2.02 16 22 C 0.30 3.15 7.74 -17.12 -0.13 3.01 16 23 O -0.48 -4.41 13.56 -18.74 -0.25 -4.66 16 24 N -0.50 -5.88 10.39 -13.33 -0.14 -6.02 16 25 C 0.13 1.26 10.85 -17.57 -0.19 1.07 16 26 C 0.08 1.23 3.36 -26.61 -0.09 1.14 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 O -0.57 -8.22 13.21 -35.23 -0.47 -8.69 16 29 C 0.12 2.22 5.84 -3.71 -0.02 2.19 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.09 2.30 6.03 -51.93 -0.31 1.98 16 32 H 0.02 0.49 7.74 -51.93 -0.40 0.09 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.40 6.11 6.87 -40.82 -0.28 5.83 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 39 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 40 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 41 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 42 H 0.40 1.53 9.06 45.56 0.41 1.95 16 43 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 44 H 0.37 3.83 9.08 45.56 0.41 4.24 16 45 H 0.06 1.06 7.93 -51.93 -0.41 0.65 16 46 H 0.02 0.42 6.65 -51.93 -0.35 0.07 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -33.39 378.93 -7.99 -41.38 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.09 Total: 11.36 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -2.70 Total: 4.70 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.26 Total: -55.68 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.63 Total: -23.28 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.39 -7.99 -41.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099970410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.100 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds