Wall clock time and date at job start Tue Mar 31 2020 18:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48500 * 109.47022 * 269.99809 * 3 2 1 5 5 H 1.48500 * 109.47279 * 30.00180 * 3 2 1 6 6 H 1.48508 * 109.46825 * 149.99954 * 3 2 1 7 7 C 1.38808 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00328 * 197.36237 * 7 2 1 9 9 N 1.36942 * 119.99666 * 17.36756 * 7 2 1 10 10 C 1.46927 * 120.63406 * 27.68404 * 9 7 2 11 11 C 1.53196 * 108.77527 * 126.37096 * 10 9 7 12 12 C 1.53035 * 109.31074 * 54.63752 * 11 10 9 13 13 H 1.09003 * 109.45595 * 178.62872 * 12 11 10 14 14 N 1.46490 * 109.46482 * 58.65347 * 12 11 10 15 15 C 1.34779 * 120.00121 * 84.99752 * 14 12 11 16 16 O 1.21277 * 119.99809 * 0.02562 * 15 14 12 17 17 C 1.50705 * 120.00162 * 180.02562 * 15 14 12 18 18 C 1.52997 * 109.46988 * 179.97438 * 17 15 14 19 19 C 1.50696 * 109.47227 * 179.97438 * 18 17 15 20 20 C 1.38829 * 120.35257 * 89.99720 * 19 18 17 21 21 C 1.38381 * 118.48733 * 179.97438 * 20 19 18 22 22 C 1.38918 * 119.10878 * 0.02562 * 21 20 19 23 23 O 1.35679 * 119.68415 * 179.97438 * 22 21 20 24 24 N 1.32250 * 120.63300 * 0.25045 * 22 21 20 25 25 C 1.31969 * 121.64294 * 359.48237 * 24 22 21 26 26 C 1.53048 * 109.53906 * 298.62922 * 12 11 10 27 27 H 1.08997 * 109.49621 * 301.42231 * 26 12 11 28 28 O 1.42896 * 109.49758 * 181.32069 * 26 12 11 29 29 C 1.46926 * 120.62576 * 207.66097 * 9 7 2 30 30 H 0.97001 * 120.00585 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.58203 * 6.58195 * 10 9 7 32 32 H 1.09001 * 109.58174 * 246.15922 * 10 9 7 33 33 H 1.09000 * 109.49155 * 294.68206 * 11 10 9 34 34 H 1.08994 * 109.49261 * 174.58789 * 11 10 9 35 35 H 0.97007 * 120.00383 * 265.00202 * 14 12 11 36 36 H 1.08994 * 109.47001 * 59.99582 * 17 15 14 37 37 H 1.08996 * 109.46765 * 300.00000 * 17 15 14 38 38 H 1.09003 * 109.47395 * 60.00197 * 18 17 15 39 39 H 1.09002 * 109.47462 * 300.00084 * 18 17 15 40 40 H 1.08004 * 120.75970 * 0.02562 * 20 19 18 41 41 H 1.07996 * 120.44603 * 180.02562 * 21 20 19 42 42 H 0.96698 * 114.00454 * 89.99541 * 23 22 21 43 43 H 1.07999 * 119.57775 * 180.26810 * 25 24 22 44 44 H 0.96702 * 113.99623 * 180.02562 * 28 26 12 45 45 H 1.08994 * 109.59204 * 353.41599 * 29 9 7 46 46 H 1.09002 * 109.58321 * 113.70100 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2796 9 7 1.3723 -2.3611 -0.3530 10 6 0.2280 -2.3349 -1.2742 11 6 0.5015 -3.3048 -2.4280 12 6 0.8197 -4.6899 -1.8602 13 1 0.9909 -5.3877 -2.6799 14 7 -0.3080 -5.1561 -1.0498 15 6 -1.3489 -5.7784 -1.6379 16 8 -1.3516 -5.9528 -2.8381 17 6 -2.5093 -6.2574 -0.8042 18 6 -3.5473 -6.9233 -1.7098 19 6 -4.7074 -7.4029 -0.8761 20 6 -5.7928 -6.5703 -0.6393 21 6 -6.8372 -7.0504 0.1311 22 6 -6.7646 -8.3414 0.6389 23 8 -7.7819 -8.8237 1.3961 24 7 -5.7110 -9.1028 0.3959 25 6 -4.7022 -8.6747 -0.3393 26 6 2.0752 -4.6098 -0.9887 27 1 2.9090 -4.2394 -1.5851 28 8 2.3892 -5.9092 -0.4839 29 6 1.8196 -3.6546 0.1814 30 1 -0.4851 0.8400 0.0004 31 1 0.0985 -1.3266 -1.6672 32 1 -0.6742 -2.6418 -0.7449 33 1 1.3502 -2.9467 -3.0108 34 1 -0.3791 -3.3672 -3.0673 35 1 -0.3058 -5.0168 -0.0897 36 1 -2.9643 -5.4090 -0.2932 37 1 -2.1542 -6.9776 -0.0671 38 1 -3.0926 -7.7718 -2.2211 39 1 -3.9023 -6.2027 -2.4466 40 1 -5.8217 -5.5708 -1.0477 41 1 -7.6973 -6.4297 0.3348 42 1 -8.4721 -9.2718 0.8883 43 1 -3.8601 -9.3263 -0.5202 44 1 3.1754 -5.9333 0.0785 45 1 2.7401 -3.5171 0.7486 46 1 1.0482 -4.0679 0.8313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099970410.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:51 Heat of formation + Delta-G solvation = -102.342359 kcal Electronic energy + Delta-G solvation = -28797.917637 eV Core-core repulsion = 24687.026005 eV Total energy + Delta-G solvation = -4110.891632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.53052 -41.11380 -39.40294 -38.20764 -36.92788 -35.59666 -35.05412 -33.53021 -33.06622 -31.91125 -30.51753 -29.84013 -27.24899 -25.79034 -24.68997 -23.94001 -23.59516 -22.80162 -21.48750 -20.25469 -19.78059 -18.84944 -18.29894 -17.95573 -17.92133 -16.99309 -16.87640 -16.73006 -16.36432 -16.15438 -15.73210 -15.57597 -15.32025 -15.02389 -14.82327 -14.54835 -14.24883 -14.12760 -14.05568 -13.68289 -13.50947 -13.24881 -13.06084 -12.93809 -12.88405 -12.75677 -12.57072 -12.33421 -12.17022 -11.99959 -11.95839 -11.83199 -11.27530 -11.01970 -10.90387 -10.75207 -10.50674 -10.40056 -9.95479 -9.72952 -8.70414 -7.89052 -5.34525 -0.01415 0.24985 1.47658 1.50272 1.57421 1.74781 2.29132 2.49691 2.56456 2.84232 3.17255 3.27279 3.63626 3.68005 3.76601 3.90987 3.94193 4.00751 4.04514 4.09131 4.24880 4.26433 4.32620 4.40178 4.49079 4.55864 4.66737 4.72945 4.75448 4.89523 4.94389 4.98840 5.03577 5.06679 5.15578 5.19014 5.35467 5.43414 5.58323 5.61136 5.64593 5.71886 6.35986 6.63610 6.63924 6.89506 6.94325 7.12865 7.33376 7.81864 8.32411 9.16912 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.002473 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.897909 B =11321.477733 C =12380.935065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.046 4.046 3 Si 0.963 3.037 4 H -0.288 1.288 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.263 4.263 8 H 0.071 0.929 9 N -0.602 5.602 10 C 0.185 3.815 11 C -0.139 4.139 12 C 0.169 3.831 13 H 0.073 0.927 14 N -0.705 5.705 15 C 0.511 3.489 16 O -0.584 6.584 17 C -0.128 4.128 18 C -0.049 4.049 19 C -0.139 4.139 20 C -0.058 4.058 21 C -0.181 4.181 22 C 0.288 3.712 23 O -0.496 6.496 24 N -0.532 5.532 25 C 0.120 3.880 26 C 0.095 3.905 27 H 0.067 0.933 28 O -0.570 6.570 29 C 0.119 3.881 30 H 0.249 0.751 31 H 0.053 0.947 32 H 0.007 0.993 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.406 0.594 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.418 0.582 43 H 0.175 0.825 44 H 0.395 0.605 45 H 0.066 0.934 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.826 -15.311 -0.929 17.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.242 4.242 3 Si 0.792 3.208 4 H -0.215 1.215 5 H -0.224 1.224 6 H -0.192 1.192 7 C -0.393 4.393 8 H 0.088 0.912 9 N -0.327 5.327 10 C 0.059 3.941 11 C -0.180 4.180 12 C 0.063 3.937 13 H 0.091 0.909 14 N -0.356 5.356 15 C 0.299 3.701 16 O -0.465 6.465 17 C -0.168 4.168 18 C -0.087 4.087 19 C -0.141 4.141 20 C -0.084 4.084 21 C -0.202 4.202 22 C 0.109 3.891 23 O -0.306 6.306 24 N -0.251 5.251 25 C -0.037 4.037 26 C 0.034 3.966 27 H 0.085 0.915 28 O -0.377 6.377 29 C -0.008 4.008 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.025 0.975 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.242 0.758 36 H 0.121 0.879 37 H 0.131 0.869 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.176 0.824 41 H 0.178 0.822 42 H 0.279 0.721 43 H 0.192 0.808 44 H 0.245 0.755 45 H 0.085 0.915 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.163 -16.079 -1.233 18.548 hybrid contribution 0.415 2.015 0.154 2.064 sum -8.748 -14.064 -1.079 16.598 Atomic orbital electron populations 1.70161 1.06549 1.25837 1.55000 1.25733 0.95985 1.01349 1.01157 0.85330 0.78228 0.79837 0.77406 1.21501 1.22438 1.19217 1.19493 0.93074 0.85779 1.40949 0.91150 1.44185 1.35843 1.01851 1.50832 1.20496 0.88062 0.97114 0.88419 1.22379 1.01305 0.95293 0.98987 1.20644 0.85012 0.94766 0.93259 0.90862 1.45972 1.19567 1.58320 1.11718 1.21152 0.83962 0.76549 0.88431 1.90649 1.80512 1.58739 1.16634 1.21655 0.93231 1.03018 0.98875 1.20118 0.91533 1.01341 0.95741 1.20907 0.97270 0.95376 1.00541 1.21787 0.91475 1.00530 0.94561 1.22321 1.02087 0.96594 0.99229 1.19460 0.88525 0.90075 0.90999 1.84737 1.32672 1.77438 1.35728 1.67181 1.02884 1.39473 1.15538 1.22736 0.95455 0.94164 0.91319 1.22341 0.95750 0.83234 0.95302 0.91521 1.86449 1.52004 1.28539 1.70713 1.21669 0.98740 0.86194 0.94160 0.94140 0.92899 0.97504 0.91574 0.92223 0.75801 0.87860 0.86949 0.89778 0.90357 0.82430 0.82169 0.72101 0.80788 0.75541 0.91508 0.95497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.44 11.19 21.65 0.24 -52.20 16 2 C -0.05 -2.45 4.91 84.86 0.42 -2.04 16 3 Si 0.96 43.00 29.59 68.60 2.03 45.03 16 4 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.26 -13.45 9.59 84.03 0.81 -12.64 16 8 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 9 N -0.60 -27.53 3.00 -699.08 -2.09 -29.62 16 10 C 0.18 8.39 5.05 86.36 0.44 8.82 16 11 C -0.14 -5.27 5.77 30.67 0.18 -5.09 16 12 C 0.17 5.62 2.47 45.02 0.11 5.73 16 13 H 0.07 2.57 7.58 -2.39 -0.02 2.55 16 14 N -0.70 -21.34 4.15 -442.41 -1.84 -23.17 16 15 C 0.51 14.87 7.79 87.66 0.68 15.55 16 16 O -0.58 -20.79 15.64 -3.02 -0.05 -20.83 16 17 C -0.13 -2.60 5.68 29.85 0.17 -2.43 16 18 C -0.05 -0.91 4.66 29.85 0.14 -0.77 16 19 C -0.14 -2.43 5.15 -19.77 -0.10 -2.53 16 20 C -0.06 -0.93 9.85 22.45 0.22 -0.71 16 21 C -0.18 -2.93 10.04 22.47 0.23 -2.71 16 22 C 0.29 5.73 7.74 84.79 0.66 6.38 16 23 O -0.50 -8.48 13.56 -89.97 -1.22 -9.70 16 24 N -0.53 -11.97 10.39 -308.95 -3.21 -15.18 16 25 C 0.12 2.25 10.85 84.63 0.92 3.17 16 26 C 0.09 2.91 3.36 30.68 0.10 3.01 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 28 O -0.57 -14.71 13.21 -148.98 -1.97 -16.68 16 29 C 0.12 4.24 5.84 86.36 0.50 4.74 16 30 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.05 2.79 6.03 -2.39 -0.01 2.78 16 32 H 0.01 0.33 7.74 -2.39 -0.02 0.31 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 35 H 0.41 11.68 6.87 -92.70 -0.64 11.05 16 36 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 1.60 8.05 -2.39 -0.02 1.58 16 39 H 0.08 1.58 8.05 -2.39 -0.02 1.56 16 40 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 41 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.42 2.75 9.06 -74.06 -0.67 2.08 16 43 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 44 H 0.39 6.71 9.08 -74.06 -0.67 6.03 16 45 H 0.07 2.27 7.93 -2.39 -0.02 2.25 16 46 H 0.03 0.96 6.65 -2.39 -0.02 0.94 16 Total: -1.00 -71.36 378.93 -3.58 -74.95 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.95 Total: 28.92 kcal Atomic # 6 Polarization: 13.02 SS G_CDS: 5.47 Total: 18.48 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -6.90 Total: -120.18 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -3.24 Total: -47.21 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -71.36 -3.58 -74.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099970410.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.396 kcal (2) G-P(sol) polarization free energy of solvation -71.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds