Wall clock time and date at job start Tue Mar 31 2020 18:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00234 * 2 1 4 4 H 1.48505 * 109.47107 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47190 * 29.99831 * 3 2 1 6 6 H 1.48496 * 109.47303 * 150.00273 * 3 2 1 7 7 C 1.38820 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99768 * 197.26041 * 7 2 1 9 9 N 1.36934 * 119.99352 * 17.26040 * 7 2 1 10 10 C 1.47200 * 120.81788 * 27.53150 * 9 7 2 11 11 C 1.53200 * 108.85268 * 126.33942 * 10 9 7 12 12 C 1.53041 * 109.31258 * 54.65747 * 11 10 9 13 13 H 1.08993 * 109.46170 * 58.64756 * 12 11 10 14 14 N 1.46491 * 109.46019 * 178.61410 * 12 11 10 15 15 C 1.34774 * 120.00045 * 275.06514 * 14 12 11 16 16 O 1.21286 * 119.99863 * 359.97438 * 15 14 12 17 17 C 1.50698 * 120.00408 * 180.02562 * 15 14 12 18 18 O 1.42902 * 109.47519 * 179.97438 * 17 15 14 19 19 C 1.42901 * 114.00155 * 179.97438 * 18 17 15 20 20 C 1.50701 * 109.46920 * 179.97438 * 19 18 17 21 21 C 1.38673 * 120.41765 * 269.72015 * 20 19 18 22 22 C 1.38635 * 118.41720 * 179.78410 * 21 20 19 23 23 C 1.38226 * 119.16007 * 0.51642 * 22 21 20 24 24 N 1.31855 * 120.76568 * 359.72534 * 23 22 21 25 25 C 1.31887 * 121.72522 * 359.97438 * 24 23 22 26 26 C 1.53045 * 109.53389 * 298.63072 * 12 11 10 27 27 H 1.08995 * 109.49607 * 181.31813 * 26 12 11 28 28 O 1.42901 * 109.49823 * 301.41679 * 26 12 11 29 29 C 1.46928 * 120.62648 * 207.39035 * 9 7 2 30 30 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.53686 * 6.53937 * 10 9 7 32 32 H 1.08999 * 109.56619 * 246.15870 * 10 9 7 33 33 H 1.08997 * 109.49720 * 294.69985 * 11 10 9 34 34 H 1.09005 * 109.49478 * 174.60472 * 11 10 9 35 35 H 0.97006 * 120.00720 * 95.06273 * 14 12 11 36 36 H 1.09002 * 109.47253 * 299.99766 * 17 15 14 37 37 H 1.09000 * 109.47149 * 59.99419 * 17 15 14 38 38 H 1.08999 * 109.47076 * 299.99965 * 19 18 17 39 39 H 1.09005 * 109.46900 * 59.99859 * 19 18 17 40 40 H 1.07994 * 120.79439 * 0.02974 * 21 20 19 41 41 H 1.07995 * 120.41754 * 180.22054 * 22 21 20 42 42 H 1.07994 * 119.61840 * 179.74669 * 23 22 21 43 43 H 1.08001 * 119.61962 * 179.97438 * 25 24 23 44 44 H 0.96703 * 113.99982 * 179.84258 * 28 26 12 45 45 H 1.09008 * 109.58644 * 113.82215 * 29 9 7 46 46 H 1.09000 * 109.59015 * 353.53838 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0537 -1.2233 0.2770 9 7 1.3717 -2.3612 -0.3529 10 6 0.2213 -2.3392 -1.2710 11 6 0.4915 -3.3081 -2.4265 12 6 0.8160 -4.6926 -1.8608 13 1 -0.0191 -5.0416 -1.2537 14 7 1.0425 -5.6297 -2.9638 15 6 -0.0022 -6.2525 -3.5442 16 8 -1.1300 -6.0375 -3.1531 17 6 0.2307 -7.2169 -4.6785 18 8 -1.0219 -7.7434 -5.1212 19 6 -0.9127 -8.6732 -6.2008 20 6 -2.2859 -9.1617 -6.5837 21 6 -2.8223 -10.2906 -5.9828 22 6 -4.0909 -10.7007 -6.3631 23 6 -4.7695 -9.9822 -7.3295 24 7 -4.2260 -8.9161 -7.8832 25 6 -3.0242 -8.4937 -7.5419 26 6 2.0757 -4.6095 -0.9956 27 1 2.3195 -5.6001 -0.6120 28 8 3.1637 -4.1209 -1.7828 29 6 1.8235 -3.6553 0.1761 30 1 -0.4850 0.8401 0.0004 31 1 0.0872 -1.3311 -1.6633 32 1 -0.6775 -2.6484 -0.7375 33 1 1.3363 -2.9477 -3.0135 34 1 -0.3922 -3.3725 -3.0615 35 1 1.9445 -5.8020 -3.2765 36 1 0.7185 -6.6971 -5.5031 37 1 0.8670 -8.0332 -4.3365 38 1 -0.4492 -8.1830 -7.0570 39 1 -0.2996 -9.5195 -5.8908 40 1 -2.2668 -10.8349 -5.2336 41 1 -4.5411 -11.5732 -5.9135 42 1 -5.7564 -10.2975 -7.6343 43 1 -2.6116 -7.6164 -8.0178 44 1 3.9957 -4.0402 -1.2967 45 1 1.0553 -4.0719 0.8277 46 1 2.7459 -3.5176 0.7403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100090294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:46 Heat of formation + Delta-G solvation = -64.017743 kcal Electronic energy + Delta-G solvation = -28353.531375 eV Core-core repulsion = 24244.301623 eV Total energy + Delta-G solvation = -4109.229752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.52266 -39.84866 -38.35016 -37.41010 -34.92975 -34.28390 -33.28049 -32.11988 -31.86369 -30.20847 -29.05526 -28.03320 -26.29845 -24.81618 -23.91001 -22.37022 -22.36501 -21.91979 -20.26846 -19.46645 -17.63747 -17.33190 -17.09435 -17.02428 -16.89364 -16.01922 -15.98038 -15.61320 -15.51054 -14.66311 -14.40096 -14.34989 -14.09808 -14.05430 -13.80906 -13.52337 -13.39855 -13.18348 -12.89883 -12.55444 -12.33038 -12.09408 -12.00053 -11.72462 -11.23338 -11.02722 -10.86171 -10.70018 -10.31156 -10.22815 -10.18729 -10.08762 -10.04015 -9.79638 -9.75472 -9.57904 -9.41398 -9.30607 -8.70752 -8.41290 -6.68566 -5.78376 -3.20693 0.68227 0.94240 2.73919 2.81353 3.38419 3.45024 3.46298 3.47818 3.91516 4.16679 4.40033 4.46145 4.47921 4.60592 4.63858 4.66892 4.76626 4.90562 4.94291 4.98455 5.03541 5.24964 5.27119 5.33724 5.40440 5.42269 5.59341 5.74336 5.74515 5.88309 5.94600 6.22608 6.33364 6.36973 6.47165 6.56264 6.62993 6.69227 6.82710 6.93562 7.40195 7.63573 7.66723 7.72180 7.78500 8.05841 8.39946 8.43936 9.19035 9.82136 10.38685 11.30122 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022885 B = 0.002016 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.197133 B =13887.247216 C =14491.781353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.582 5.582 10 C 0.172 3.828 11 C -0.144 4.144 12 C 0.164 3.836 13 H 0.091 0.909 14 N -0.718 5.718 15 C 0.508 3.492 16 O -0.520 6.520 17 C 0.044 3.956 18 O -0.355 6.355 19 C 0.105 3.895 20 C -0.141 4.141 21 C -0.053 4.053 22 C -0.177 4.177 23 C 0.103 3.897 24 N -0.487 5.487 25 C 0.123 3.877 26 C 0.082 3.918 27 H 0.046 0.954 28 O -0.555 6.555 29 C 0.118 3.882 30 H 0.254 0.746 31 H 0.091 0.909 32 H 0.020 0.980 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.400 0.600 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.157 0.843 43 H 0.157 0.843 44 H 0.373 0.627 45 H 0.027 0.973 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.200 -22.708 -12.592 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.304 5.304 10 C 0.046 3.954 11 C -0.184 4.184 12 C 0.060 3.940 13 H 0.109 0.891 14 N -0.371 5.371 15 C 0.292 3.708 16 O -0.395 6.395 17 C -0.036 4.036 18 O -0.274 6.274 19 C 0.028 3.972 20 C -0.143 4.143 21 C -0.079 4.079 22 C -0.196 4.196 23 C -0.054 4.054 24 N -0.196 5.196 25 C -0.034 4.034 26 C 0.021 3.979 27 H 0.063 0.937 28 O -0.360 6.360 29 C -0.010 4.010 30 H 0.064 0.936 31 H 0.109 0.891 32 H 0.038 0.962 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.234 0.766 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.154 0.846 41 H 0.155 0.845 42 H 0.174 0.826 43 H 0.174 0.826 44 H 0.219 0.781 45 H 0.045 0.955 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.872 -21.871 -13.299 25.611 hybrid contribution 1.997 0.185 0.879 2.190 sum 1.125 -21.685 -12.420 25.015 Atomic orbital electron populations 1.70034 1.05256 1.25583 1.53658 1.25044 0.95295 0.98456 1.00943 0.86270 0.78988 0.83663 0.77672 1.21456 1.21823 1.20518 1.19115 0.92510 0.84768 1.41510 0.91746 1.43970 1.35348 1.00812 1.50284 1.20844 0.88319 0.98516 0.87693 1.22489 1.00703 0.94497 1.00692 1.21028 0.96370 0.89735 0.86844 0.89136 1.46085 1.09224 1.44949 1.36814 1.20150 0.85562 0.81455 0.83626 1.90756 1.22568 1.63301 1.62854 1.22255 0.87428 0.97068 0.96833 1.88120 1.27552 1.60434 1.51262 1.21260 0.93152 0.92557 0.90238 1.20569 0.97620 0.97051 0.99076 1.21538 0.94942 0.94900 0.96519 1.22165 0.95782 1.02086 0.99599 1.22854 0.99559 0.90581 0.92425 1.67753 1.11557 1.13672 1.26585 1.22738 0.89529 0.97570 0.93593 1.22631 0.86751 0.95681 0.92877 0.93653 1.86440 1.20452 1.89034 1.40088 1.21534 0.98687 0.88125 0.92633 0.93553 0.89071 0.96174 0.91529 0.92969 0.76559 0.90138 0.90382 0.91696 0.91970 0.84647 0.84530 0.82614 0.82564 0.78103 0.95526 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 11.18 55.49 0.62 -25.75 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.25 -6.71 9.59 -15.06 -0.14 -6.86 16 8 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 9 N -0.58 -14.27 2.95 -172.09 -0.51 -14.78 16 10 C 0.17 4.24 5.33 -3.56 -0.02 4.22 16 11 C -0.14 -2.96 5.51 -26.61 -0.15 -3.11 16 12 C 0.16 2.87 2.20 -67.89 -0.15 2.72 16 13 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 14 N -0.72 -10.13 5.05 -53.77 -0.27 -10.40 16 15 C 0.51 7.63 7.87 -10.99 -0.09 7.55 16 16 O -0.52 -10.49 16.16 -14.36 -0.23 -10.72 16 17 C 0.04 0.45 6.42 36.00 0.23 0.68 16 18 O -0.36 -4.39 9.86 -55.14 -0.54 -4.93 16 19 C 0.11 0.86 6.09 36.01 0.22 1.08 16 20 C -0.14 -1.33 5.53 -104.48 -0.58 -1.90 16 21 C -0.05 -0.44 9.86 -39.27 -0.39 -0.83 16 22 C -0.18 -1.33 10.11 -39.44 -0.40 -1.73 16 23 C 0.10 0.89 11.18 -17.55 -0.20 0.69 16 24 N -0.49 -5.39 10.36 -13.25 -0.14 -5.52 16 25 C 0.12 1.25 10.86 -17.55 -0.19 1.06 16 26 C 0.08 1.32 3.38 -26.61 -0.09 1.23 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 O -0.56 -8.62 12.09 -35.23 -0.43 -9.05 16 29 C 0.12 2.32 6.15 -3.71 -0.02 2.30 16 30 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.09 2.52 6.04 -51.93 -0.31 2.20 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.42 7.61 -51.93 -0.40 1.03 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 4.55 8.26 -40.82 -0.34 4.22 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 39 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 40 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 44 H 0.37 4.53 9.08 45.56 0.41 4.94 16 45 H 0.03 0.54 8.14 -51.92 -0.42 0.11 16 46 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -36.12 383.52 -8.85 -44.96 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -6.05 Total: 6.67 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -2.04 Total: 7.06 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.30 Total: -56.45 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -1.20 Total: -24.70 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.12 -8.85 -44.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100090294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.055 kcal (2) G-P(sol) polarization free energy of solvation -36.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds