Wall clock time and date at job start Tue Mar 31 2020 18:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00234 * 2 1 4 4 H 1.48505 * 109.47107 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47190 * 29.99831 * 3 2 1 6 6 H 1.48496 * 109.47303 * 150.00273 * 3 2 1 7 7 C 1.38820 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99768 * 197.26041 * 7 2 1 9 9 N 1.36934 * 119.99352 * 17.26040 * 7 2 1 10 10 C 1.47200 * 120.81788 * 27.53150 * 9 7 2 11 11 C 1.53200 * 108.85268 * 126.33942 * 10 9 7 12 12 C 1.53041 * 109.31258 * 54.65747 * 11 10 9 13 13 H 1.08993 * 109.46170 * 58.64756 * 12 11 10 14 14 N 1.46491 * 109.46019 * 178.61410 * 12 11 10 15 15 C 1.34774 * 120.00045 * 275.06514 * 14 12 11 16 16 O 1.21286 * 119.99863 * 359.97438 * 15 14 12 17 17 C 1.50698 * 120.00408 * 180.02562 * 15 14 12 18 18 O 1.42902 * 109.47519 * 179.97438 * 17 15 14 19 19 C 1.42901 * 114.00155 * 179.97438 * 18 17 15 20 20 C 1.50701 * 109.46920 * 179.97438 * 19 18 17 21 21 C 1.38673 * 120.41765 * 269.72015 * 20 19 18 22 22 C 1.38635 * 118.41720 * 179.78410 * 21 20 19 23 23 C 1.38226 * 119.16007 * 0.51642 * 22 21 20 24 24 N 1.31855 * 120.76568 * 359.72534 * 23 22 21 25 25 C 1.31887 * 121.72522 * 359.97438 * 24 23 22 26 26 C 1.53045 * 109.53389 * 298.63072 * 12 11 10 27 27 H 1.08995 * 109.49607 * 181.31813 * 26 12 11 28 28 O 1.42901 * 109.49823 * 301.41679 * 26 12 11 29 29 C 1.46928 * 120.62648 * 207.39035 * 9 7 2 30 30 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.53686 * 6.53937 * 10 9 7 32 32 H 1.08999 * 109.56619 * 246.15870 * 10 9 7 33 33 H 1.08997 * 109.49720 * 294.69985 * 11 10 9 34 34 H 1.09005 * 109.49478 * 174.60472 * 11 10 9 35 35 H 0.97006 * 120.00720 * 95.06273 * 14 12 11 36 36 H 1.09002 * 109.47253 * 299.99766 * 17 15 14 37 37 H 1.09000 * 109.47149 * 59.99419 * 17 15 14 38 38 H 1.08999 * 109.47076 * 299.99965 * 19 18 17 39 39 H 1.09005 * 109.46900 * 59.99859 * 19 18 17 40 40 H 1.07994 * 120.79439 * 0.02974 * 21 20 19 41 41 H 1.07995 * 120.41754 * 180.22054 * 22 21 20 42 42 H 1.07994 * 119.61840 * 179.74669 * 23 22 21 43 43 H 1.08001 * 119.61962 * 179.97438 * 25 24 23 44 44 H 0.96703 * 113.99982 * 179.84258 * 28 26 12 45 45 H 1.09008 * 109.58644 * 113.82215 * 29 9 7 46 46 H 1.09000 * 109.59015 * 353.53838 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0537 -1.2233 0.2770 9 7 1.3717 -2.3612 -0.3529 10 6 0.2213 -2.3392 -1.2710 11 6 0.4915 -3.3081 -2.4265 12 6 0.8160 -4.6926 -1.8608 13 1 -0.0191 -5.0416 -1.2537 14 7 1.0425 -5.6297 -2.9638 15 6 -0.0022 -6.2525 -3.5442 16 8 -1.1300 -6.0375 -3.1531 17 6 0.2307 -7.2169 -4.6785 18 8 -1.0219 -7.7434 -5.1212 19 6 -0.9127 -8.6732 -6.2008 20 6 -2.2859 -9.1617 -6.5837 21 6 -2.8223 -10.2906 -5.9828 22 6 -4.0909 -10.7007 -6.3631 23 6 -4.7695 -9.9822 -7.3295 24 7 -4.2260 -8.9161 -7.8832 25 6 -3.0242 -8.4937 -7.5419 26 6 2.0757 -4.6095 -0.9956 27 1 2.3195 -5.6001 -0.6120 28 8 3.1637 -4.1209 -1.7828 29 6 1.8235 -3.6553 0.1761 30 1 -0.4850 0.8401 0.0004 31 1 0.0872 -1.3311 -1.6633 32 1 -0.6775 -2.6484 -0.7375 33 1 1.3363 -2.9477 -3.0135 34 1 -0.3922 -3.3725 -3.0615 35 1 1.9445 -5.8020 -3.2765 36 1 0.7185 -6.6971 -5.5031 37 1 0.8670 -8.0332 -4.3365 38 1 -0.4492 -8.1830 -7.0570 39 1 -0.2996 -9.5195 -5.8908 40 1 -2.2668 -10.8349 -5.2336 41 1 -4.5411 -11.5732 -5.9135 42 1 -5.7564 -10.2975 -7.6343 43 1 -2.6116 -7.6164 -8.0178 44 1 3.9957 -4.0402 -1.2967 45 1 1.0553 -4.0719 0.8277 46 1 2.7459 -3.5176 0.7403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100090294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:45 Heat of formation + Delta-G solvation = -92.308279 kcal Electronic energy + Delta-G solvation = -28354.758145 eV Core-core repulsion = 24244.301623 eV Total energy + Delta-G solvation = -4110.456521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.23238 -41.02139 -39.60738 -38.40847 -36.56739 -35.65525 -33.96550 -33.68516 -32.71426 -31.86775 -30.56296 -29.10777 -27.21677 -26.42402 -24.54493 -24.00618 -23.60700 -22.98347 -21.50662 -21.01782 -19.06570 -18.38842 -17.99432 -17.89427 -17.67115 -17.46808 -16.95423 -16.79199 -16.46940 -16.31576 -15.79626 -15.49014 -15.32732 -15.29602 -14.94217 -14.74248 -14.53151 -14.29126 -13.98930 -13.79130 -13.64671 -13.30530 -13.08442 -12.94999 -12.81296 -12.65261 -12.42098 -12.32157 -12.09326 -12.05001 -11.89834 -11.42572 -10.93335 -10.85834 -10.77461 -10.73692 -10.51152 -10.40758 -10.04867 -10.01068 -8.68645 -7.86320 -5.31181 0.04567 0.31482 1.46947 1.49524 1.57542 1.60684 1.86138 2.51334 2.73127 3.18818 3.29138 3.40043 3.54544 3.62261 3.76281 3.85572 3.87690 3.93309 4.05676 4.05836 4.07708 4.24243 4.28644 4.33646 4.37847 4.43975 4.50547 4.69502 4.71531 4.77485 4.83683 4.87521 4.96349 5.00981 5.12713 5.15375 5.27941 5.44762 5.50515 5.63181 5.68318 5.74147 6.04240 6.37183 6.63195 6.98436 7.00682 7.13626 7.30040 7.83379 8.36521 9.20703 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022885 B = 0.002016 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.197133 B =13887.247216 C =14491.781353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.060 4.060 3 Si 0.969 3.031 4 H -0.289 1.289 5 H -0.300 1.300 6 H -0.262 1.262 7 C -0.249 4.249 8 H 0.076 0.924 9 N -0.598 5.598 10 C 0.181 3.819 11 C -0.125 4.125 12 C 0.169 3.831 13 H 0.069 0.931 14 N -0.702 5.702 15 C 0.502 3.498 16 O -0.581 6.581 17 C 0.052 3.948 18 O -0.395 6.395 19 C 0.104 3.896 20 C -0.154 4.154 21 C -0.062 4.062 22 C -0.174 4.174 23 C 0.087 3.913 24 N -0.521 5.521 25 C 0.100 3.900 26 C 0.102 3.898 27 H 0.090 0.910 28 O -0.562 6.562 29 C 0.109 3.891 30 H 0.248 0.752 31 H 0.054 0.946 32 H -0.010 1.010 33 H 0.062 0.938 34 H 0.038 0.962 35 H 0.419 0.581 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.157 0.843 41 H 0.166 0.834 42 H 0.178 0.822 43 H 0.161 0.839 44 H 0.391 0.609 45 H 0.021 0.979 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 -25.308 -13.082 28.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.255 4.255 3 Si 0.798 3.202 4 H -0.217 1.217 5 H -0.227 1.227 6 H -0.186 1.186 7 C -0.380 4.380 8 H 0.094 0.906 9 N -0.321 5.321 10 C 0.054 3.946 11 C -0.165 4.165 12 C 0.063 3.937 13 H 0.087 0.913 14 N -0.355 5.355 15 C 0.289 3.711 16 O -0.460 6.460 17 C -0.027 4.027 18 O -0.315 6.315 19 C 0.028 3.972 20 C -0.156 4.156 21 C -0.088 4.088 22 C -0.194 4.194 23 C -0.069 4.069 24 N -0.230 5.230 25 C -0.057 4.057 26 C 0.041 3.959 27 H 0.107 0.893 28 O -0.370 6.370 29 C -0.018 4.018 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.008 0.992 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.257 0.743 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.101 0.899 39 H 0.108 0.892 40 H 0.175 0.825 41 H 0.184 0.816 42 H 0.195 0.805 43 H 0.178 0.822 44 H 0.240 0.760 45 H 0.039 0.961 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.114 -24.521 -13.803 28.218 hybrid contribution 1.069 0.912 1.048 1.753 sum 3.184 -23.609 -12.755 27.022 Atomic orbital electron populations 1.70210 1.06915 1.25715 1.55897 1.25861 0.95995 1.01822 1.01777 0.85233 0.78219 0.79470 0.77320 1.21663 1.22704 1.18638 1.19534 0.93038 0.85677 1.39709 0.90603 1.44164 1.34973 1.02226 1.50740 1.20523 0.87841 0.97415 0.88787 1.22184 0.99829 0.95840 0.98682 1.20678 0.96858 0.88335 0.87790 0.91271 1.45806 1.10270 1.43721 1.35729 1.21148 0.84491 0.81398 0.84068 1.90738 1.25006 1.65375 1.64846 1.22320 0.87414 0.97332 0.95645 1.88063 1.29048 1.61632 1.52722 1.21461 0.92855 0.92957 0.89907 1.20816 0.98449 0.97430 0.98923 1.21924 0.95441 0.94775 0.96696 1.22518 0.95522 1.02533 0.98778 1.23327 1.00615 0.90238 0.92742 1.67721 1.12305 1.15033 1.27918 1.22950 0.89844 0.98272 0.94610 1.22324 0.86293 0.96503 0.90785 0.89286 1.86402 1.21105 1.89109 1.40339 1.21831 0.98964 0.86596 0.94361 0.94340 0.92805 0.99228 0.91891 0.94283 0.74344 0.87169 0.86222 0.89878 0.89185 0.82543 0.81630 0.80503 0.82173 0.75955 0.96128 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.40 11.18 21.65 0.24 -57.16 16 2 C -0.06 -3.38 4.92 84.86 0.42 -2.96 16 3 Si 0.97 45.22 29.59 68.60 2.03 47.24 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.25 -13.40 9.59 84.04 0.81 -12.60 16 8 H 0.08 3.84 7.88 -2.91 -0.02 3.82 16 9 N -0.60 -29.54 2.95 -698.36 -2.06 -31.60 16 10 C 0.18 9.31 5.33 86.31 0.46 9.77 16 11 C -0.13 -5.26 5.51 30.67 0.17 -5.09 16 12 C 0.17 5.74 2.20 45.02 0.10 5.84 16 13 H 0.07 2.70 7.58 -2.39 -0.02 2.68 16 14 N -0.70 -18.08 5.05 -442.42 -2.23 -20.32 16 15 C 0.50 14.28 7.87 87.66 0.69 14.96 16 16 O -0.58 -23.73 16.16 15.99 0.26 -23.47 16 17 C 0.05 0.88 6.42 71.24 0.46 1.34 16 18 O -0.40 -8.96 9.86 -129.94 -1.28 -10.24 16 19 C 0.10 1.44 6.09 71.24 0.43 1.87 16 20 C -0.15 -2.72 5.53 -19.77 -0.11 -2.83 16 21 C -0.06 -0.93 9.86 22.47 0.22 -0.70 16 22 C -0.17 -2.34 10.11 22.36 0.23 -2.11 16 23 C 0.09 1.46 11.18 84.69 0.95 2.41 16 24 N -0.52 -11.66 10.36 -195.84 -2.03 -13.69 16 25 C 0.10 2.05 10.86 84.67 0.92 2.97 16 26 C 0.10 2.98 3.38 30.67 0.10 3.08 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 O -0.56 -15.35 12.09 -148.98 -1.80 -17.15 16 29 C 0.11 4.12 6.15 86.36 0.53 4.65 16 30 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 31 H 0.05 3.15 6.04 -2.39 -0.01 3.14 16 32 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H 0.06 2.68 7.61 -2.39 -0.02 2.66 16 34 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.42 7.81 8.26 -92.70 -0.77 7.04 16 36 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 39 H 0.09 0.71 8.09 -2.38 -0.02 0.69 16 40 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 42 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 43 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 44 H 0.39 7.77 9.08 -74.06 -0.67 7.09 16 45 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 46 H 0.08 2.67 7.93 -2.39 -0.02 2.66 16 Total: -1.00 -83.86 383.52 -0.93 -84.79 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -0.43 Total: 20.99 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 6.37 Total: 20.60 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -6.08 Total: -122.76 kcal Atomic # 8 Polarization: -48.04 SS G_CDS: -2.82 Total: -50.86 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -83.86 -0.93 -84.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100090294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.517 kcal (2) G-P(sol) polarization free energy of solvation -83.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds