Wall clock time and date at job start Tue Mar 31 2020 18:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48496 * 109.47117 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.46804 * 120.00272 * 3 2 1 6 6 H 1.48500 * 109.47109 * 240.00094 * 3 2 1 7 7 C 1.38814 * 120.00115 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00314 * 162.77229 * 7 2 1 9 9 N 1.36940 * 119.99741 * 342.76707 * 7 2 1 10 10 C 1.46926 * 120.62975 * 152.45397 * 9 7 2 11 11 C 1.53187 * 108.77629 * 126.36813 * 10 9 7 12 12 C 1.53044 * 109.31375 * 54.63309 * 11 10 9 13 13 H 1.09004 * 109.45651 * 58.64188 * 12 11 10 14 14 N 1.46495 * 109.46025 * 178.61038 * 12 11 10 15 15 C 1.34778 * 120.00737 * 275.00114 * 14 12 11 16 16 O 1.21282 * 119.99547 * 359.97438 * 15 14 12 17 17 C 1.50693 * 120.00268 * 180.02562 * 15 14 12 18 18 O 1.42899 * 109.46988 * 179.97438 * 17 15 14 19 19 C 1.42897 * 114.00030 * 179.97438 * 18 17 15 20 20 C 1.50700 * 109.47277 * 180.02562 * 19 18 17 21 21 C 1.38675 * 120.41836 * 90.00157 * 20 19 18 22 22 C 1.38626 * 118.41797 * 180.02562 * 21 20 19 23 23 C 1.38220 * 119.16645 * 0.02562 * 22 21 20 24 24 N 1.31857 * 120.76323 * 359.97438 * 23 22 21 25 25 C 1.31883 * 121.72530 * 359.70355 * 24 23 22 26 26 C 1.53033 * 109.54034 * 298.63686 * 12 11 10 27 27 H 1.09004 * 109.49753 * 301.41329 * 26 12 11 28 28 O 1.42900 * 109.50129 * 181.34654 * 26 12 11 29 29 C 1.46930 * 120.63112 * 332.17432 * 9 7 2 30 30 H 0.96998 * 120.00327 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58548 * 246.15278 * 10 9 7 32 32 H 1.08993 * 109.58790 * 6.43652 * 10 9 7 33 33 H 1.09003 * 109.50190 * 174.58311 * 11 10 9 34 34 H 1.09002 * 109.49979 * 294.65263 * 11 10 9 35 35 H 0.97004 * 119.99659 * 95.00697 * 14 12 11 36 36 H 1.08998 * 109.47465 * 299.99931 * 17 15 14 37 37 H 1.09005 * 109.47302 * 60.00267 * 17 15 14 38 38 H 1.09003 * 109.47675 * 300.00278 * 19 18 17 39 39 H 1.09006 * 109.47311 * 60.00200 * 19 18 17 40 40 H 1.07999 * 120.78614 * 359.97438 * 21 20 19 41 41 H 1.08008 * 120.41342 * 180.02562 * 22 21 20 42 42 H 1.08002 * 119.62122 * 179.97438 * 23 22 21 43 43 H 1.07997 * 119.61969 * 180.30978 * 25 24 23 44 44 H 0.96706 * 114.00105 * 180.02562 * 28 26 12 45 45 H 1.08997 * 109.58242 * 353.41759 * 29 9 7 46 46 H 1.08994 * 109.58811 * 113.84402 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6963 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0539 -1.2230 -0.2775 9 7 1.3717 -2.3616 0.3503 10 6 1.8215 -3.6548 -0.1827 11 6 2.0734 -4.6099 0.9882 12 6 0.8147 -4.6909 1.8551 13 1 -0.0221 -5.0379 1.2488 14 7 1.0408 -5.6291 2.9573 15 6 0.8409 -6.9488 2.7708 16 8 0.4733 -7.3597 1.6905 17 6 1.0729 -7.9138 3.9048 18 8 0.7951 -9.2439 3.4627 19 6 0.9856 -10.2420 4.4675 20 6 0.6665 -11.5989 3.8946 21 6 1.6576 -12.3556 3.2879 22 6 1.3180 -13.5977 2.7745 23 6 0.0121 -14.0374 2.8831 24 7 -0.9046 -13.2906 3.4667 25 6 -0.6163 -12.1069 3.9718 26 6 0.4936 -3.3062 2.4219 27 1 1.3400 -2.9477 3.0079 28 8 -0.6635 -3.3888 3.2564 29 6 0.2274 -2.3367 1.2716 30 1 -0.4850 0.8400 -0.0004 31 1 1.0517 -4.0695 -0.8335 32 1 2.7427 -3.5162 -0.7486 33 1 2.3147 -5.6010 0.6039 34 1 2.9052 -4.2396 1.5874 35 1 1.3343 -5.3004 3.8214 36 1 2.1108 -7.8483 4.2310 37 1 0.4142 -7.6626 4.7362 38 1 2.0220 -10.2250 4.8047 39 1 0.3257 -10.0391 5.3110 40 1 2.6697 -11.9857 3.2164 41 1 2.0646 -14.2142 2.2957 42 1 -0.2607 -15.0037 2.4853 43 1 -1.3928 -11.5259 4.4469 44 1 -0.9255 -2.5454 3.6502 45 1 0.0986 -1.3292 1.6671 46 1 -0.6750 -2.6418 0.7419 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100090296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:52 Heat of formation + Delta-G solvation = -94.502384 kcal Electronic energy + Delta-G solvation = -28250.414873 eV Core-core repulsion = 24139.863208 eV Total energy + Delta-G solvation = -4110.551665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.23164 -41.02154 -39.58843 -38.39905 -36.89075 -35.79879 -34.04910 -33.87538 -32.70936 -31.51132 -30.59623 -29.14931 -27.23086 -26.45047 -24.54037 -24.13276 -23.46109 -22.97973 -21.57651 -21.10657 -19.03199 -18.34251 -18.11757 -17.92788 -17.88061 -17.67172 -17.01169 -16.82276 -16.54165 -16.31423 -15.64025 -15.51984 -15.44385 -15.03947 -14.94464 -14.73649 -14.44093 -14.29352 -13.98742 -13.86902 -13.59867 -13.36766 -13.26255 -13.05891 -13.00790 -12.61515 -12.56912 -12.32421 -12.10391 -12.04106 -11.88397 -11.40171 -11.01244 -10.87124 -10.77403 -10.72628 -10.59710 -10.40627 -10.05818 -10.04271 -8.77246 -7.90932 -5.38291 0.04846 0.31739 1.49904 1.50699 1.58417 1.62198 1.85157 2.49758 2.73063 3.10519 3.18887 3.27879 3.55207 3.62369 3.73060 3.88011 3.89660 3.95485 4.05198 4.06118 4.08016 4.24757 4.30650 4.34489 4.41516 4.44302 4.46297 4.50898 4.70731 4.71723 4.84099 4.88224 4.93782 5.03376 5.15330 5.15794 5.28452 5.31988 5.46744 5.55837 5.63413 5.74384 6.04062 6.32716 6.61294 6.83122 6.98593 7.09586 7.29310 7.76964 8.30150 9.15814 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031507 B = 0.001907 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.480458 B =14681.658977 C =14971.623152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.049 4.049 3 Si 0.972 3.028 4 H -0.296 1.296 5 H -0.272 1.272 6 H -0.278 1.278 7 C -0.266 4.266 8 H 0.074 0.926 9 N -0.604 5.604 10 C 0.140 3.860 11 C -0.122 4.122 12 C 0.171 3.829 13 H 0.050 0.950 14 N -0.700 5.700 15 C 0.505 3.495 16 O -0.581 6.581 17 C 0.052 3.948 18 O -0.394 6.394 19 C 0.104 3.896 20 C -0.154 4.154 21 C -0.063 4.063 22 C -0.174 4.174 23 C 0.088 3.912 24 N -0.520 5.520 25 C 0.101 3.899 26 C 0.094 3.906 27 H 0.071 0.929 28 O -0.573 6.573 29 C 0.155 3.845 30 H 0.252 0.748 31 H 0.005 0.995 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.416 0.584 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.156 0.844 41 H 0.166 0.834 42 H 0.178 0.822 43 H 0.162 0.838 44 H 0.393 0.607 45 H 0.072 0.928 46 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.586 -21.498 15.537 27.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.222 1.222 5 H -0.198 1.198 6 H -0.204 1.204 7 C -0.396 4.396 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.014 3.986 11 C -0.162 4.162 12 C 0.065 3.935 13 H 0.068 0.932 14 N -0.353 5.353 15 C 0.292 3.708 16 O -0.460 6.460 17 C -0.027 4.027 18 O -0.314 6.314 19 C 0.028 3.972 20 C -0.156 4.156 21 C -0.089 4.089 22 C -0.194 4.194 23 C -0.069 4.069 24 N -0.229 5.229 25 C -0.056 4.056 26 C 0.033 3.967 27 H 0.089 0.911 28 O -0.380 6.380 29 C 0.028 3.972 30 H 0.061 0.939 31 H 0.023 0.977 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.253 0.747 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.107 0.893 39 H 0.102 0.898 40 H 0.173 0.827 41 H 0.183 0.817 42 H 0.195 0.805 43 H 0.179 0.821 44 H 0.242 0.758 45 H 0.090 0.910 46 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 5.324 -22.655 14.474 27.406 hybrid contribution 0.757 2.188 0.012 2.315 sum 6.081 -20.467 14.486 25.802 Atomic orbital electron populations 1.70188 1.06761 1.26183 1.54991 1.25862 0.96035 1.01695 1.00876 0.85283 0.77482 0.78810 0.78495 1.22239 1.19806 1.20357 1.19522 0.93187 0.85512 1.41377 0.90877 1.44237 1.35613 1.02346 1.50659 1.21043 0.97785 0.85758 0.93982 1.22190 0.97067 0.99439 0.97496 1.20615 0.97358 0.87352 0.88127 0.93220 1.45722 1.68668 1.05395 1.15479 1.21089 0.76466 0.83408 0.89852 1.90721 1.47458 1.78601 1.29229 1.22310 1.04565 0.81686 0.94113 1.88057 1.90206 1.14704 1.38433 1.21459 1.02693 0.83174 0.89874 1.20815 0.95316 0.97083 1.02392 1.21921 1.00577 0.93713 0.92693 1.22511 0.98556 0.97311 1.00989 1.23324 0.89665 0.99796 0.94092 1.67722 1.37909 1.06838 1.10470 1.22956 0.95367 0.91901 0.95363 1.22446 0.88053 0.94266 0.91946 0.91123 1.86394 1.47590 1.37984 1.66019 1.21155 0.88283 0.98254 0.89494 0.93912 0.97739 0.91394 0.91347 0.90194 0.74653 0.86392 0.87062 0.89330 0.89784 0.82673 0.81686 0.80472 0.82052 0.75801 0.90956 0.99076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.87 11.19 21.65 0.24 -53.63 16 2 C -0.05 -2.64 4.91 84.86 0.42 -2.23 16 3 Si 0.97 42.98 29.59 68.60 2.03 45.01 16 4 H -0.30 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 6 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 7 C -0.27 -14.09 9.58 84.03 0.81 -13.29 16 8 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 9 N -0.60 -29.67 3.00 -699.93 -2.10 -31.77 16 10 C 0.14 5.96 6.52 86.36 0.56 6.53 16 11 C -0.12 -4.23 5.65 30.67 0.17 -4.06 16 12 C 0.17 5.98 2.12 45.02 0.10 6.08 16 13 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 14 N -0.70 -18.46 4.92 -442.42 -2.18 -20.63 16 15 C 0.50 14.46 7.87 87.65 0.69 15.15 16 16 O -0.58 -23.60 16.16 16.00 0.26 -23.35 16 17 C 0.05 0.90 6.42 71.23 0.46 1.36 16 18 O -0.39 -8.90 9.86 -129.94 -1.28 -10.18 16 19 C 0.10 1.42 6.09 71.24 0.43 1.86 16 20 C -0.15 -2.68 5.53 -19.77 -0.11 -2.79 16 21 C -0.06 -0.94 9.86 22.47 0.22 -0.71 16 22 C -0.17 -2.32 10.11 22.36 0.23 -2.09 16 23 C 0.09 1.43 11.18 84.68 0.95 2.38 16 24 N -0.52 -11.37 10.36 -195.84 -2.03 -13.40 16 25 C 0.10 2.01 10.86 84.67 0.92 2.93 16 26 C 0.09 3.33 3.13 30.53 0.10 3.42 16 27 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 28 O -0.57 -18.20 13.16 -148.98 -1.96 -20.16 16 29 C 0.16 7.25 4.91 86.22 0.42 7.68 16 30 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.07 2.74 7.93 -2.39 -0.02 2.72 16 33 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 34 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.42 7.79 8.60 -92.71 -0.80 7.00 16 36 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.09 0.72 8.10 -2.39 -0.02 0.70 16 39 H 0.08 0.79 8.09 -2.38 -0.02 0.77 16 40 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 42 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 44 H 0.39 9.73 9.08 -74.05 -0.67 9.05 16 45 H 0.07 3.68 6.04 -2.39 -0.01 3.67 16 46 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 Total: -1.00 -80.07 385.14 -1.12 -81.19 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.46 Total: 24.70 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: 6.36 Total: 22.22 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -6.06 Total: -119.43 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -2.98 Total: -53.69 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -80.07 -1.12 -81.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100090296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.314 kcal (2) G-P(sol) polarization free energy of solvation -80.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds