Wall clock time and date at job start Tue Mar 31 2020 18:52:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31405 * 1
3 3 Si 1.86805 * 120.00142 * 2 1
4 4 H 1.48495 * 109.47173 * 180.02562 * 3 2 1
5 5 H 1.48499 * 109.47263 * 300.00758 * 3 2 1
6 6 H 1.48500 * 109.46973 * 60.00410 * 3 2 1
7 7 C 1.38946 * 119.99867 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00040 * 179.97438 * 7 2 1
9 9 N 1.37098 * 120.00595 * 359.97438 * 7 2 1
10 10 C 1.34774 * 120.00693 * 179.97438 * 9 7 2
11 11 O 1.21294 * 119.99711 * 0.02562 * 10 9 7
12 12 C 1.50700 * 120.00188 * 180.02562 * 10 9 7
13 13 N 1.46895 * 109.47106 * 180.02562 * 12 10 9
14 14 C 1.46900 * 110.99924 * 180.02562 * 13 12 10
15 15 C 1.53786 * 113.61608 * 105.85932 * 14 13 12
16 16 C 1.54049 * 86.98426 * 140.01769 * 15 14 13
17 17 C 1.53002 * 113.62024 * 220.02020 * 16 15 14
18 18 N 1.46500 * 109.47425 * 272.50011 * 17 16 15
19 19 C 1.34772 * 120.00059 * 180.02562 * 18 17 16
20 20 O 1.21283 * 120.00308 * 359.97438 * 19 18 17
21 21 C 1.50697 * 120.00066 * 180.02562 * 19 18 17
22 22 C 1.50696 * 109.47464 * 179.97438 * 21 19 18
23 23 C 1.34512 * 125.79220 * 89.71376 * 22 21 19
24 24 C 1.41381 * 106.84430 * 179.89153 * 23 22 21
25 25 C 1.34513 * 106.83901 * 0.37049 * 24 23 22
26 26 O 1.34306 * 125.78807 * 270.02154 * 22 21 19
27 27 C 1.53781 * 113.61428 * 203.46824 * 14 13 12
28 28 H 0.97005 * 120.00057 * 359.97438 * 1 2 3
29 29 H 0.97006 * 119.99412 * 0.02562 * 9 7 2
30 30 H 1.08994 * 109.47122 * 60.00287 * 12 10 9
31 31 H 1.09001 * 109.46900 * 300.00559 * 12 10 9
32 32 H 1.00902 * 110.99778 * 303.95198 * 13 12 10
33 33 H 1.09002 * 112.84869 * 334.66356 * 14 13 12
34 34 H 1.08992 * 113.61675 * 254.61513 * 15 14 13
35 35 H 1.09000 * 113.60973 * 25.51800 * 15 14 13
36 36 H 1.08996 * 113.68970 * 89.12734 * 16 15 14
37 37 H 1.08997 * 109.47064 * 32.50151 * 17 16 15
38 38 H 1.09006 * 109.47182 * 152.49563 * 17 16 15
39 39 H 0.96996 * 119.99355 * 359.97438 * 18 17 16
40 40 H 1.09005 * 109.47018 * 300.00068 * 21 19 18
41 41 H 1.09006 * 109.47329 * 59.99263 * 21 19 18
42 42 H 1.08005 * 126.57545 * 0.02728 * 23 22 21
43 43 H 1.08000 * 126.57835 * 180.16521 * 24 23 22
44 44 H 1.08000 * 125.79222 * 179.74684 * 25 24 23
45 45 H 1.08999 * 113.61567 * 334.48132 * 27 14 13
46 46 H 1.08998 * 113.61196 * 105.38486 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6178 0.0000
4 1 3.7081 1.3464 -0.0006
5 1 1.8893 2.3966 -1.2124
6 1 1.8894 2.3964 1.2126
7 6 2.0088 -1.2033 -0.0005
8 1 3.0888 -1.2034 -0.0010
9 7 1.3234 -2.3907 -0.0005
10 6 1.9972 -3.5579 -0.0016
11 8 3.2101 -3.5579 -0.0021
12 6 1.2437 -4.8630 -0.0022
13 7 2.1982 -5.9795 -0.0027
14 6 1.4979 -7.2708 -0.0039
15 6 1.5432 -7.9950 -1.3598
16 6 1.7480 -9.2985 -0.5649
17 6 2.7616 -10.2518 -1.2013
18 7 2.0795 -11.1149 -2.1688
19 6 2.7779 -12.0405 -2.8558
20 8 3.9712 -12.1585 -2.6735
21 6 2.0765 -12.9280 -3.8514
22 6 3.0747 -13.8669 -4.4781
23 6 3.4069 -15.0854 -4.0152
24 6 4.3703 -15.6132 -4.9052
25 6 4.5753 -14.6823 -5.8542
26 8 3.7879 -13.6267 -5.5905
27 6 2.3402 -8.4289 0.5567
28 1 -0.4850 0.8401 0.0004
29 1 0.3533 -2.3907 -0.0005
30 1 0.6167 -4.9201 -0.8919
31 1 0.6173 -4.9212 0.8880
32 1 2.8331 -5.9121 -0.7840
33 1 0.4979 -7.2104 0.4257
34 1 0.6007 -7.9585 -1.9060
35 1 2.4004 -7.7187 -1.9738
36 1 0.8173 -9.7936 -0.2882
37 1 3.5334 -9.6745 -1.7103
38 1 3.2194 -10.8659 -0.4258
39 1 1.1252 -11.0208 -2.3143
40 1 1.3040 -13.5049 -3.3428
41 1 1.6194 -12.3135 -4.6271
42 1 3.0116 -15.5688 -3.1339
43 1 4.8518 -16.5773 -4.8345
44 1 5.2577 -14.7688 -6.6869
45 1 3.4149 -8.2712 0.4656
46 1 2.0406 -8.7425 1.5567
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001100776077.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:52:20
Heat of formation + Delta-G solvation = -38.236974 kcal
Electronic energy + Delta-G solvation = -26821.456574 eV
Core-core repulsion = 22713.344760 eV
Total energy + Delta-G solvation = -4108.111814 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-42.87022 -40.19552 -39.24943 -38.04307 -35.16258 -34.05293 -33.53123 -33.20433
-32.45009 -31.20209 -28.79396 -27.18181 -26.02722 -25.76944 -24.03343 -22.07815
-21.85281 -21.39563 -20.57771 -19.86965 -19.07888 -17.89133 -17.85024 -17.51479
-16.48304 -16.11188 -16.02519 -15.88892 -15.58161 -15.13490 -14.67710 -14.53995
-14.34041 -14.02355 -13.96449 -13.73959 -13.30188 -13.13765 -13.01510 -12.94565
-12.57475 -12.54430 -12.39409 -12.16909 -11.78652 -11.55823 -11.52545 -11.10981
-11.04285 -10.71754 -10.49509 -10.34203 -10.25871 -10.21737 -10.16450 -9.52120
-9.39300 -8.78863 -8.44557 -8.01576 -7.94849 -6.42014 -3.82680 1.37183
2.26247 2.27691 2.58344 2.97570 3.16386 3.27019 3.34548 3.90965
4.09343 4.13865 4.28802 4.31363 4.38446 4.55934 4.58192 4.68632
4.69721 4.83640 4.85714 4.88630 4.97270 5.18269 5.25159 5.27837
5.44033 5.48494 5.58486 5.59864 5.65917 5.68695 5.76599 5.79846
5.86123 5.97171 6.00442 6.12873 6.17918 6.20629 6.33075 6.81007
7.10095 7.27633 7.55409 7.67058 7.85214 8.06742 8.61273 9.18076
9.54377 10.05901 10.75821
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.026626 B = 0.001435 C = 0.001402
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1051.356128 B =19511.604694 C =19966.891906
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.902 5.902
2 C 0.022 3.978
3 Si 0.929 3.071
4 H -0.268 1.268
5 H -0.282 1.282
6 H -0.281 1.281
7 C -0.299 4.299
8 H 0.103 0.897
9 N -0.564 5.564
10 C 0.440 3.560
11 O -0.583 6.583
12 C 0.050 3.950
13 N -0.658 5.658
14 C 0.069 3.931
15 C -0.166 4.166
16 C -0.124 4.124
17 C 0.131 3.869
18 N -0.727 5.727
19 C 0.510 3.490
20 O -0.528 6.528
21 C -0.061 4.061
22 C 0.003 3.997
23 C -0.195 4.195
24 C -0.214 4.214
25 C -0.037 4.037
26 O -0.172 6.172
27 C -0.117 4.117
28 H 0.271 0.729
29 H 0.392 0.608
30 H 0.043 0.957
31 H 0.085 0.915
32 H 0.352 0.648
33 H 0.096 0.904
34 H 0.066 0.934
35 H 0.086 0.914
36 H 0.095 0.905
37 H 0.071 0.929
38 H 0.069 0.931
39 H 0.401 0.599
40 H 0.124 0.876
41 H 0.113 0.887
42 H 0.146 0.854
43 H 0.148 0.852
44 H 0.203 0.797
45 H 0.090 0.910
46 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.658 -29.960 -7.980 31.118
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.544 5.544
2 C -0.179 4.179
3 Si 0.756 3.244
4 H -0.192 1.192
5 H -0.208 1.208
6 H -0.207 1.207
7 C -0.429 4.429
8 H 0.121 0.879
9 N -0.201 5.201
10 C 0.225 3.775
11 O -0.467 6.467
12 C -0.082 4.082
13 N -0.289 5.289
14 C -0.042 4.042
15 C -0.205 4.205
16 C -0.144 4.144
17 C 0.008 3.992
18 N -0.379 5.379
19 C 0.296 3.704
20 O -0.403 6.403
21 C -0.101 4.101
22 C -0.048 4.048
23 C -0.215 4.215
24 C -0.233 4.233
25 C -0.104 4.104
26 O -0.068 6.068
27 C -0.156 4.156
28 H 0.081 0.919
29 H 0.225 0.775
30 H 0.061 0.939
31 H 0.103 0.897
32 H 0.172 0.828
33 H 0.114 0.886
34 H 0.085 0.915
35 H 0.104 0.896
36 H 0.114 0.886
37 H 0.089 0.911
38 H 0.088 0.912
39 H 0.235 0.765
40 H 0.142 0.858
41 H 0.131 0.869
42 H 0.164 0.836
43 H 0.166 0.834
44 H 0.219 0.781
45 H 0.109 0.891
46 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -1.007 -29.551 -7.316 30.460
hybrid contribution -1.015 0.649 -0.896 1.502
sum -2.023 -28.902 -8.211 30.114
Atomic orbital electron populations
1.69618 1.05942 1.28030 1.50773 1.25255 0.95629 0.99711 0.97339
0.85803 0.79743 0.81132 0.77690 1.19206 1.20788 1.20736 1.19765
0.93423 0.82251 1.47417 0.87869 1.41874 1.09184 1.04626 1.64412
1.19856 0.88413 0.84780 0.84430 1.90528 1.13788 1.87085 1.55342
1.21705 0.94436 0.91024 1.01058 1.60013 1.18253 0.99564 1.51026
1.22992 0.97508 0.88786 0.94960 1.23907 1.02372 0.96303 0.97949
1.22715 0.99062 0.94295 0.98292 1.21419 0.94941 0.91776 0.91105
1.45977 1.12403 1.36893 1.42677 1.20403 0.87707 0.80797 0.81530
1.90772 1.14879 1.69101 1.65568 1.20086 0.95635 0.96526 0.97874
1.21448 0.98379 0.96084 0.88850 1.21524 1.01841 0.95893 1.02217
1.21810 1.02652 1.01808 0.97077 1.24026 0.98053 0.85939 1.02409
1.83994 1.44315 1.40116 1.38409 1.23051 1.01136 0.94093 0.97269
0.91947 0.77485 0.93880 0.89657 0.82784 0.88586 0.91496 0.89592
0.88650 0.91070 0.91240 0.76451 0.85846 0.86928 0.83605 0.83432
0.78062 0.89131 0.91038
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16
2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16
3 Si 0.93 21.09 29.55 -169.99 -5.02 16.06 16
4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16
5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16
8 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16
9 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16
10 C 0.44 10.38 7.82 -10.99 -0.09 10.29 16
11 O -0.58 -15.95 15.78 5.55 0.09 -15.86 16
12 C 0.05 0.87 6.02 -4.98 -0.03 0.84 16
13 N -0.66 -10.29 6.24 -107.13 -0.67 -10.96 16
14 C 0.07 0.76 4.16 -66.90 -0.28 0.49 16
15 C -0.17 -1.49 7.27 -25.77 -0.19 -1.68 16
16 C -0.12 -0.92 3.76 -89.67 -0.34 -1.26 16
17 C 0.13 1.10 5.51 -4.04 -0.02 1.08 16
18 N -0.73 -4.99 5.56 -60.29 -0.33 -5.33 16
19 C 0.51 4.70 7.82 -10.99 -0.09 4.61 16
20 O -0.53 -7.53 16.03 5.56 0.09 -7.44 16
21 C -0.06 -0.37 6.23 -29.04 -0.18 -0.55 16
22 C 0.00 0.03 5.81 -35.63 -0.21 -0.18 16
23 C -0.20 -1.73 10.81 -39.70 -0.43 -2.16 16
24 C -0.21 -1.76 10.91 -39.70 -0.43 -2.19 16
25 C -0.04 -0.30 12.09 29.42 0.36 0.06 16
26 O -0.17 -1.79 10.65 5.69 0.06 -1.73 16
27 C -0.12 -1.13 7.44 -25.92 -0.19 -1.32 16
28 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16
29 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16
30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16
31 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16
32 H 0.35 5.77 7.91 -39.29 -0.31 5.45 16
33 H 0.10 0.99 7.88 -51.93 -0.41 0.58 16
34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
35 H 0.09 0.87 7.59 -51.93 -0.39 0.47 16
36 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16
37 H 0.07 0.73 7.85 -51.93 -0.41 0.33 16
38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
39 H 0.40 1.51 8.47 -40.82 -0.35 1.16 16
40 H 0.12 0.34 8.14 -51.93 -0.42 -0.09 16
41 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16
42 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16
43 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16
44 H 0.20 0.86 8.06 -52.49 -0.42 0.44 16
45 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16
46 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
LS Contribution 394.77 15.07 5.95 5.95
Total: -1.00 -36.32 394.77 -8.30 -44.62
By element:
Atomic # 1 Polarization: 19.58 SS G_CDS: -6.77 Total: 12.81 kcal
Atomic # 6 Polarization: 2.37 SS G_CDS: -2.36 Total: 0.01 kcal
Atomic # 7 Polarization: -54.08 SS G_CDS: -0.34 Total: -54.42 kcal
Atomic # 8 Polarization: -25.27 SS G_CDS: 0.24 Total: -25.03 kcal
Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal
Total LS contribution 5.95 Total: 5.95 kcal
Total: -36.32 -8.30 -44.62 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001100776077.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.380 kcal
(2) G-P(sol) polarization free energy of solvation -36.316 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.936 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.617 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.237 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds