Wall clock time and date at job start Tue Mar 31 2020 18:52:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31405 * 1
3 3 Si 1.86805 * 120.00142 * 2 1
4 4 H 1.48495 * 109.47173 * 180.02562 * 3 2 1
5 5 H 1.48499 * 109.47263 * 300.00758 * 3 2 1
6 6 H 1.48500 * 109.46973 * 60.00410 * 3 2 1
7 7 C 1.38946 * 119.99867 * 180.02562 * 2 1 3
8 8 H 1.08003 * 120.00040 * 179.97438 * 7 2 1
9 9 N 1.37098 * 120.00595 * 359.97438 * 7 2 1
10 10 C 1.34774 * 120.00693 * 179.97438 * 9 7 2
11 11 O 1.21294 * 119.99711 * 0.02562 * 10 9 7
12 12 C 1.50700 * 120.00188 * 180.02562 * 10 9 7
13 13 N 1.46895 * 109.47106 * 180.02562 * 12 10 9
14 14 C 1.46900 * 110.99924 * 180.02562 * 13 12 10
15 15 C 1.53786 * 113.61608 * 105.85932 * 14 13 12
16 16 C 1.54049 * 86.98426 * 140.01769 * 15 14 13
17 17 C 1.53002 * 113.62024 * 220.02020 * 16 15 14
18 18 N 1.46500 * 109.47425 * 272.50011 * 17 16 15
19 19 C 1.34772 * 120.00059 * 180.02562 * 18 17 16
20 20 O 1.21283 * 120.00308 * 359.97438 * 19 18 17
21 21 C 1.50697 * 120.00066 * 180.02562 * 19 18 17
22 22 C 1.50696 * 109.47464 * 179.97438 * 21 19 18
23 23 C 1.34512 * 125.79220 * 89.71376 * 22 21 19
24 24 C 1.41381 * 106.84430 * 179.89153 * 23 22 21
25 25 C 1.34513 * 106.83901 * 0.37049 * 24 23 22
26 26 O 1.34306 * 125.78807 * 270.02154 * 22 21 19
27 27 C 1.53781 * 113.61428 * 203.46824 * 14 13 12
28 28 H 0.97005 * 120.00057 * 359.97438 * 1 2 3
29 29 H 0.97006 * 119.99412 * 0.02562 * 9 7 2
30 30 H 1.08994 * 109.47122 * 60.00287 * 12 10 9
31 31 H 1.09001 * 109.46900 * 300.00559 * 12 10 9
32 32 H 1.00902 * 110.99778 * 303.95198 * 13 12 10
33 33 H 1.09002 * 112.84869 * 334.66356 * 14 13 12
34 34 H 1.08992 * 113.61675 * 254.61513 * 15 14 13
35 35 H 1.09000 * 113.60973 * 25.51800 * 15 14 13
36 36 H 1.08996 * 113.68970 * 89.12734 * 16 15 14
37 37 H 1.08997 * 109.47064 * 32.50151 * 17 16 15
38 38 H 1.09006 * 109.47182 * 152.49563 * 17 16 15
39 39 H 0.96996 * 119.99355 * 359.97438 * 18 17 16
40 40 H 1.09005 * 109.47018 * 300.00068 * 21 19 18
41 41 H 1.09006 * 109.47329 * 59.99263 * 21 19 18
42 42 H 1.08005 * 126.57545 * 0.02728 * 23 22 21
43 43 H 1.08000 * 126.57835 * 180.16521 * 24 23 22
44 44 H 1.08000 * 125.79222 * 179.74684 * 25 24 23
45 45 H 1.08999 * 113.61567 * 334.48132 * 27 14 13
46 46 H 1.08998 * 113.61196 * 105.38486 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6178 0.0000
4 1 3.7081 1.3464 -0.0006
5 1 1.8893 2.3966 -1.2124
6 1 1.8894 2.3964 1.2126
7 6 2.0088 -1.2033 -0.0005
8 1 3.0888 -1.2034 -0.0010
9 7 1.3234 -2.3907 -0.0005
10 6 1.9972 -3.5579 -0.0016
11 8 3.2101 -3.5579 -0.0021
12 6 1.2437 -4.8630 -0.0022
13 7 2.1982 -5.9795 -0.0027
14 6 1.4979 -7.2708 -0.0039
15 6 1.5432 -7.9950 -1.3598
16 6 1.7480 -9.2985 -0.5649
17 6 2.7616 -10.2518 -1.2013
18 7 2.0795 -11.1149 -2.1688
19 6 2.7779 -12.0405 -2.8558
20 8 3.9712 -12.1585 -2.6735
21 6 2.0765 -12.9280 -3.8514
22 6 3.0747 -13.8669 -4.4781
23 6 3.4069 -15.0854 -4.0152
24 6 4.3703 -15.6132 -4.9052
25 6 4.5753 -14.6823 -5.8542
26 8 3.7879 -13.6267 -5.5905
27 6 2.3402 -8.4289 0.5567
28 1 -0.4850 0.8401 0.0004
29 1 0.3533 -2.3907 -0.0005
30 1 0.6167 -4.9201 -0.8919
31 1 0.6173 -4.9212 0.8880
32 1 2.8331 -5.9121 -0.7840
33 1 0.4979 -7.2104 0.4257
34 1 0.6007 -7.9585 -1.9060
35 1 2.4004 -7.7187 -1.9738
36 1 0.8173 -9.7936 -0.2882
37 1 3.5334 -9.6745 -1.7103
38 1 3.2194 -10.8659 -0.4258
39 1 1.1252 -11.0208 -2.3143
40 1 1.3040 -13.5049 -3.3428
41 1 1.6194 -12.3135 -4.6271
42 1 3.0116 -15.5688 -3.1339
43 1 4.8518 -16.5773 -4.8345
44 1 5.2577 -14.7688 -6.6869
45 1 3.4149 -8.2712 0.4656
46 1 2.0406 -8.7425 1.5567
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001100776077.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:52:19
Heat of formation + Delta-G solvation = -66.440741 kcal
Electronic energy + Delta-G solvation = -26822.679581 eV
Core-core repulsion = 22713.344760 eV
Total energy + Delta-G solvation = -4109.334821 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-43.48173 -40.96235 -40.30227 -39.67022 -36.23345 -35.80174 -34.45419 -34.09944
-33.24840 -33.03064 -29.63888 -28.27173 -27.17120 -26.53096 -25.69750 -22.72359
-22.65238 -22.09561 -21.33799 -21.11726 -20.37678 -19.85215 -18.50279 -18.13916
-17.76248 -17.06798 -16.87380 -16.73973 -16.61671 -16.34775 -16.18497 -15.83022
-15.40046 -15.29838 -14.98187 -14.65944 -14.42549 -14.15809 -13.74172 -13.61477
-13.55578 -13.53924 -13.51988 -13.32163 -12.98405 -12.86601 -12.71280 -12.56408
-12.41414 -12.12870 -11.87191 -11.53507 -11.50189 -11.26423 -11.00925 -10.82034
-10.32883 -10.09803 -10.01572 -9.38960 -9.19010 -8.47294 -5.95909 0.75679
1.36220 1.41697 1.55780 1.59139 1.67516 2.04519 2.05345 2.29165
2.38161 2.98408 3.20154 3.51168 3.59952 3.62246 3.66810 3.95068
4.00479 4.08185 4.14559 4.17135 4.29994 4.36112 4.38347 4.46031
4.49274 4.53391 4.61535 4.74232 4.87642 4.90346 4.92773 4.95706
5.01302 5.15222 5.22280 5.24682 5.38447 5.41058 5.52734 5.61926
5.94982 6.20178 6.22082 6.43600 6.54920 6.60419 7.12692 7.24729
7.56321 8.12141 8.70248
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.026626 B = 0.001435 C = 0.001402
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1051.356128 B =19511.604694 C =19966.891906
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C -0.011 4.011
3 Si 0.992 3.008
4 H -0.275 1.275
5 H -0.270 1.270
6 H -0.270 1.270
7 C -0.336 4.336
8 H 0.077 0.923
9 N -0.573 5.573
10 C 0.434 3.566
11 O -0.627 6.627
12 C 0.067 3.933
13 N -0.677 5.677
14 C 0.061 3.939
15 C -0.159 4.159
16 C -0.098 4.098
17 C 0.134 3.866
18 N -0.710 5.710
19 C 0.507 3.493
20 O -0.587 6.587
21 C -0.054 4.054
22 C -0.019 4.019
23 C -0.212 4.212
24 C -0.230 4.230
25 C -0.047 4.047
26 O -0.196 6.196
27 C -0.121 4.121
28 H 0.278 0.722
29 H 0.397 0.603
30 H 0.068 0.932
31 H 0.105 0.895
32 H 0.343 0.657
33 H 0.114 0.886
34 H 0.086 0.914
35 H 0.069 0.931
36 H 0.127 0.873
37 H 0.046 0.954
38 H 0.061 0.939
39 H 0.421 0.579
40 H 0.162 0.838
41 H 0.136 0.864
42 H 0.160 0.840
43 H 0.166 0.834
44 H 0.232 0.768
45 H 0.070 0.930
46 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.938 -30.948 -8.209 32.397
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.560 5.560
2 C -0.211 4.211
3 Si 0.816 3.184
4 H -0.200 1.200
5 H -0.195 1.195
6 H -0.195 1.195
7 C -0.465 4.465
8 H 0.095 0.905
9 N -0.210 5.210
10 C 0.222 3.778
11 O -0.513 6.513
12 C -0.065 4.065
13 N -0.308 5.308
14 C -0.049 4.049
15 C -0.199 4.199
16 C -0.117 4.117
17 C 0.010 3.990
18 N -0.363 5.363
19 C 0.294 3.706
20 O -0.467 6.467
21 C -0.093 4.093
22 C -0.069 4.069
23 C -0.231 4.231
24 C -0.248 4.248
25 C -0.114 4.114
26 O -0.093 6.093
27 C -0.160 4.160
28 H 0.087 0.913
29 H 0.231 0.769
30 H 0.086 0.914
31 H 0.123 0.877
32 H 0.162 0.838
33 H 0.132 0.868
34 H 0.104 0.896
35 H 0.088 0.912
36 H 0.145 0.855
37 H 0.065 0.935
38 H 0.079 0.921
39 H 0.258 0.742
40 H 0.179 0.821
41 H 0.154 0.846
42 H 0.177 0.823
43 H 0.184 0.816
44 H 0.248 0.752
45 H 0.088 0.912
46 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -3.375 -30.555 -7.542 31.653
hybrid contribution -0.273 0.899 -0.806 1.238
sum -3.648 -29.656 -8.348 31.024
Atomic orbital electron populations
1.69668 1.06757 1.29238 1.50328 1.26007 0.96542 1.02302 0.96229
0.84887 0.77978 0.77180 0.78383 1.19987 1.19512 1.19533 1.19700
0.92673 0.84165 1.49976 0.90532 1.41936 1.09336 1.04688 1.65034
1.21028 0.88290 0.86373 0.82093 1.90494 1.16081 1.88038 1.56731
1.21567 0.94043 0.87894 1.03044 1.60037 1.18707 1.00963 1.51053
1.23223 0.98103 0.86736 0.96835 1.23807 1.02671 0.96424 0.96960
1.22590 0.99510 0.93263 0.96369 1.21256 0.94977 0.91784 0.91007
1.45817 1.13243 1.35679 1.41542 1.21003 0.87102 0.80887 0.81559
1.90750 1.17544 1.70875 1.67544 1.20248 0.95186 0.96261 0.97636
1.22075 0.99013 0.96957 0.88822 1.21888 1.02150 0.96277 1.02799
1.22179 1.02821 1.02746 0.97097 1.24720 0.98010 0.85402 1.03304
1.83981 1.45003 1.41150 1.39176 1.23046 0.99960 0.94294 0.98677
0.91270 0.76895 0.91400 0.87700 0.83799 0.86837 0.89582 0.91228
0.85496 0.93541 0.92114 0.74154 0.82081 0.84617 0.82279 0.81646
0.75196 0.91175 0.90046
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -49.34 13.05 21.66 0.28 -49.05 16
2 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16
3 Si 0.99 43.09 29.55 68.60 2.03 45.12 16
4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16
5 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16
6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16
7 C -0.34 -19.22 9.68 84.04 0.81 -18.41 16
8 H 0.08 4.72 7.16 -2.91 -0.02 4.69 16
9 N -0.57 -29.43 5.29 -306.99 -1.62 -31.05 16
10 C 0.43 20.77 7.82 87.66 0.69 21.46 16
11 O -0.63 -35.39 15.78 -3.07 -0.05 -35.44 16
12 C 0.07 2.22 6.02 85.56 0.52 2.73 16
13 N -0.68 -20.74 6.24 -492.86 -3.07 -23.82 16
14 C 0.06 1.22 4.16 45.44 0.19 1.41 16
15 C -0.16 -2.50 7.27 31.21 0.23 -2.27 16
16 C -0.10 -1.20 3.76 -10.18 -0.04 -1.24 16
17 C 0.13 2.13 5.51 86.38 0.48 2.61 16
18 N -0.71 -8.30 5.56 -463.06 -2.57 -10.87 16
19 C 0.51 8.81 7.82 87.66 0.69 9.49 16
20 O -0.59 -17.13 16.03 -3.04 -0.05 -17.17 16
21 C -0.05 -0.54 6.23 29.10 0.18 -0.36 16
22 C -0.02 -0.33 5.81 24.83 0.14 -0.19 16
23 C -0.21 -3.64 10.81 22.19 0.24 -3.40 16
24 C -0.23 -3.66 10.91 22.19 0.24 -3.41 16
25 C -0.05 -0.75 12.09 66.97 0.81 0.06 16
26 O -0.20 -4.06 10.65 -2.57 -0.03 -4.09 16
27 C -0.12 -2.17 7.44 31.12 0.23 -1.94 16
28 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16
29 H 0.40 19.19 7.90 -92.70 -0.73 18.45 16
30 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16
31 H 0.10 3.10 8.13 -2.39 -0.02 3.08 16
32 H 0.34 11.41 7.91 -89.69 -0.71 10.70 16
33 H 0.11 1.93 7.88 -2.39 -0.02 1.91 16
34 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
35 H 0.07 1.36 7.59 -2.39 -0.02 1.34 16
36 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16
37 H 0.05 0.99 7.85 -2.39 -0.02 0.97 16
38 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16
39 H 0.42 1.64 8.47 -92.71 -0.79 0.85 16
40 H 0.16 0.31 8.14 -2.38 -0.02 0.29 16
41 H 0.14 0.71 8.14 -2.38 -0.02 0.69 16
42 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16
43 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16
44 H 0.23 1.77 8.06 -2.91 -0.02 1.74 16
45 H 0.07 1.56 8.10 -2.39 -0.02 1.54 16
46 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
Total: -1.00 -82.55 394.77 -0.41 -82.96
By element:
Atomic # 1 Polarization: 38.19 SS G_CDS: -1.20 Total: 36.99 kcal
Atomic # 6 Polarization: 0.56 SS G_CDS: 5.87 Total: 6.42 kcal
Atomic # 7 Polarization: -107.81 SS G_CDS: -6.99 Total: -114.79 kcal
Atomic # 8 Polarization: -56.58 SS G_CDS: -0.12 Total: -56.70 kcal
Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal
Total: -82.55 -0.41 -82.96 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001100776077.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.519 kcal
(2) G-P(sol) polarization free energy of solvation -82.546 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.027 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.413 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.959 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.441 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds