Wall clock time and date at job start Tue Mar 31 2020 18:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00078 * 2 1 4 4 H 1.48495 * 109.47086 * 240.00322 * 3 2 1 5 5 H 1.48502 * 109.46865 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47220 * 119.99956 * 3 2 1 7 7 C 1.38810 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00105 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00453 * 179.97438 * 9 7 2 11 11 C 1.53777 * 113.61806 * 204.99993 * 10 9 7 12 12 C 1.53779 * 87.08122 * 219.93410 * 11 10 9 13 13 C 1.53008 * 113.61317 * 139.97938 * 12 11 10 14 14 N 1.46502 * 109.47144 * 176.52762 * 13 12 11 15 15 C 1.34771 * 120.00230 * 179.97438 * 14 13 12 16 16 O 1.21287 * 119.99435 * 0.02562 * 15 14 13 17 17 C 1.50693 * 120.00299 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.47435 * 180.02562 * 17 15 14 19 19 N 1.46493 * 109.47245 * 180.02562 * 18 17 15 20 20 C 1.34778 * 119.99793 * 179.97438 * 19 18 17 21 21 O 1.21695 * 120.00192 * 359.97438 * 20 19 18 22 22 C 1.46661 * 119.99796 * 179.97438 * 20 19 18 23 23 C 1.36547 * 125.98711 * 179.97438 * 22 20 19 24 24 C 1.40360 * 106.70833 * 180.02562 * 23 22 20 25 25 C 1.35131 * 107.11647 * 359.97438 * 24 23 22 26 26 O 1.33934 * 108.76477 * 0.02562 * 25 24 23 27 27 C 1.53784 * 87.17440 * 25.39243 * 12 11 10 28 28 H 0.96998 * 119.99698 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99749 * 359.97438 * 9 7 2 30 30 H 1.09003 * 112.84690 * 336.19781 * 10 9 7 31 31 H 1.08999 * 113.61535 * 105.38356 * 11 10 9 32 32 H 1.09000 * 113.61135 * 334.48412 * 11 10 9 33 33 H 1.09000 * 113.61778 * 270.79736 * 12 11 10 34 34 H 1.08999 * 109.46602 * 56.53128 * 13 12 11 35 35 H 1.09001 * 109.47219 * 296.53053 * 13 12 11 36 36 H 0.97006 * 119.99440 * 0.02562 * 14 13 12 37 37 H 1.08997 * 109.47542 * 59.99831 * 17 15 14 38 38 H 1.09001 * 109.46974 * 300.00200 * 17 15 14 39 39 H 1.08997 * 109.47315 * 59.99176 * 18 17 15 40 40 H 1.09001 * 109.46782 * 299.99802 * 18 17 15 41 41 H 0.96998 * 120.00266 * 359.97438 * 19 18 17 42 42 H 1.08005 * 126.64485 * 0.02562 * 23 22 20 43 43 H 1.08003 * 126.44294 * 180.02562 * 24 23 22 44 44 H 1.07997 * 125.61851 * 180.26772 * 25 24 23 45 45 H 1.08994 * 113.61452 * 89.15409 * 27 12 11 46 46 H 1.08996 * 113.60960 * 220.06255 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.2598 -4.8285 -0.5970 12 6 1.8502 -5.6983 0.5253 13 6 0.8488 -6.6872 1.1255 14 7 1.5242 -7.5217 2.1224 15 6 0.8343 -8.4703 2.7862 16 8 -0.3457 -8.6333 2.5578 17 6 1.5289 -9.3283 3.8119 18 6 0.5276 -10.3172 4.4121 19 7 1.2027 -11.1509 5.4097 20 6 0.5127 -12.0994 6.0736 21 8 -0.6713 -12.2630 5.8446 22 6 1.1887 -12.9344 7.0719 23 6 0.6113 -13.9256 7.8126 24 6 1.6191 -14.4553 8.6334 25 6 2.7534 -13.7734 8.3607 26 8 2.4900 -12.8576 7.4195 27 6 2.0041 -4.4049 1.3429 28 1 -0.4849 0.8401 0.0004 29 1 0.3557 -2.3880 0.0002 30 1 3.0653 -3.5636 -0.4078 31 1 1.5896 -5.1195 -1.5943 32 1 0.1795 -4.7006 -0.5279 33 1 2.7999 -6.1645 0.2627 34 1 0.4451 -7.3201 0.3352 35 1 0.0366 -6.1379 1.6017 36 1 2.4679 -7.3909 2.3052 37 1 1.9327 -8.6951 4.6019 38 1 2.3411 -9.8778 3.3360 39 1 0.1241 -10.9503 3.6219 40 1 -0.2848 -9.7680 4.8879 41 1 2.1463 -11.0203 5.5925 42 1 -0.4211 -14.2408 7.7744 43 1 1.5090 -15.2578 9.3478 44 1 3.7150 -13.9418 8.8226 45 1 1.1277 -4.1610 1.9432 46 1 2.9339 -4.3545 1.9093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100960878.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:00 Heat of formation + Delta-G solvation = -31.113732 kcal Electronic energy + Delta-G solvation = -26637.907518 eV Core-core repulsion = 22530.104591 eV Total energy + Delta-G solvation = -4107.802927 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.17797 -40.20265 -39.62526 -38.49755 -35.73563 -34.73733 -33.59614 -33.32176 -31.85459 -30.41855 -29.99040 -27.48821 -25.14101 -24.96989 -23.80809 -22.83724 -22.21239 -21.09907 -21.00521 -20.48318 -19.18508 -18.92444 -17.40501 -17.03713 -16.91009 -16.78553 -16.29769 -16.15053 -15.86359 -15.22057 -14.80869 -14.76200 -14.56317 -14.01791 -13.85196 -13.58825 -13.51771 -13.44082 -13.17189 -13.14772 -12.89848 -12.34204 -11.98658 -11.89338 -11.81065 -11.42556 -11.25241 -10.84382 -10.80524 -10.58722 -10.56299 -10.30871 -10.19200 -9.92421 -9.85770 -9.65984 -9.51325 -9.18461 -9.09321 -8.88396 -6.98484 -5.79861 -3.09021 0.56228 1.84569 2.12927 2.46646 2.59629 2.73608 3.20094 3.41767 3.46231 3.47547 4.11844 4.29398 4.38480 4.53112 4.56559 4.60864 4.62482 4.93696 4.95660 5.03877 5.10579 5.20082 5.25510 5.36334 5.44358 5.45768 5.47244 5.59293 5.78814 5.79041 5.81077 5.84574 5.90370 6.06848 6.21336 6.27893 6.28238 6.32736 6.40320 6.55781 6.79530 6.94935 7.08337 7.35917 7.60835 7.66556 8.06915 8.38610 9.49581 10.07799 10.41883 11.42382 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025371 B = 0.001394 C = 0.001368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.361035 B =20078.714291 C =20462.671895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.166 3.834 11 C -0.143 4.143 12 C -0.127 4.127 13 C 0.131 3.869 14 N -0.723 5.723 15 C 0.514 3.486 16 O -0.538 6.538 17 C -0.155 4.155 18 C 0.133 3.867 19 N -0.721 5.721 20 C 0.603 3.397 21 O -0.514 6.514 22 C -0.080 4.080 23 C -0.119 4.119 24 C -0.225 4.225 25 C -0.006 4.006 26 O -0.165 6.165 27 C -0.161 4.161 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.401 0.599 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.405 0.595 42 H 0.161 0.839 43 H 0.158 0.842 44 H 0.211 0.789 45 H 0.078 0.922 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.312 -29.866 14.945 34.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.350 5.350 10 C 0.053 3.947 11 C -0.182 4.182 12 C -0.146 4.146 13 C 0.008 3.992 14 N -0.374 5.374 15 C 0.299 3.701 16 O -0.415 6.415 17 C -0.195 4.195 18 C 0.010 3.990 19 N -0.373 5.373 20 C 0.389 3.611 21 O -0.390 6.390 22 C -0.132 4.132 23 C -0.139 4.139 24 C -0.244 4.244 25 C -0.076 4.076 26 O -0.061 6.061 27 C -0.202 4.202 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.235 0.765 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.240 0.760 42 H 0.179 0.821 43 H 0.175 0.825 44 H 0.228 0.772 45 H 0.096 0.904 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.875 -29.642 14.410 33.887 hybrid contribution 1.134 0.852 0.448 1.488 sum 9.009 -28.791 14.859 33.628 Atomic orbital electron populations 1.69649 1.05151 1.25901 1.57255 1.24768 0.95509 0.97785 1.02737 0.86267 0.78544 0.83515 0.77839 1.21222 1.21657 1.21252 1.19258 0.91036 0.84270 1.43228 0.91153 1.42402 1.05771 0.99870 1.86983 1.21548 0.95304 0.85066 0.92742 1.23446 1.01071 0.96997 0.96715 1.22639 0.98359 0.94393 0.99245 1.21466 0.95450 0.91999 0.90302 1.46035 1.13822 1.36125 1.41463 1.20239 0.87290 0.80710 0.81881 1.90766 1.15668 1.69196 1.65870 1.21806 0.99936 0.98575 0.99192 1.21130 0.94556 0.92187 0.91141 1.45862 1.14036 1.36172 1.41208 1.16502 0.85767 0.79350 0.79516 1.90933 1.14003 1.69007 1.65090 1.22078 0.82456 1.04120 1.04595 1.22032 1.01401 0.95160 0.95326 1.21906 0.92784 1.04872 1.04849 1.24452 1.00977 0.90362 0.91776 1.84051 1.26523 1.49048 1.46457 1.23978 1.01301 0.94993 0.99976 0.93368 0.78051 0.90703 0.91979 0.90080 0.89398 0.91679 0.91114 0.76516 0.87955 0.88082 0.89956 0.89895 0.76007 0.82108 0.82470 0.77210 0.90365 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.13 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.25 -6.77 9.97 -15.06 -0.15 -6.92 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.71 -17.58 5.41 -52.55 -0.28 -17.86 16 10 C 0.17 3.12 4.48 -67.03 -0.30 2.82 16 11 C -0.14 -2.20 7.40 -25.92 -0.19 -2.39 16 12 C -0.13 -1.59 3.75 -89.80 -0.34 -1.93 16 13 C 0.13 1.61 5.50 -4.04 -0.02 1.59 16 14 N -0.72 -7.07 5.56 -60.29 -0.33 -7.41 16 15 C 0.51 5.54 7.83 -10.99 -0.09 5.46 16 16 O -0.54 -8.32 15.98 5.55 0.09 -8.23 16 17 C -0.15 -0.99 5.81 -27.89 -0.16 -1.15 16 18 C 0.13 1.17 4.96 -4.05 -0.02 1.15 16 19 N -0.72 -5.42 5.55 -61.63 -0.34 -5.76 16 20 C 0.60 6.13 7.79 -12.86 -0.10 6.03 16 21 O -0.51 -7.13 16.86 5.19 0.09 -7.04 16 22 C -0.08 -0.68 7.13 -36.79 -0.26 -0.94 16 23 C -0.12 -0.90 10.62 -39.39 -0.42 -1.32 16 24 C -0.23 -1.16 10.87 -39.89 -0.43 -1.60 16 25 C -0.01 -0.02 12.08 29.63 0.36 0.33 16 26 O -0.17 -1.09 10.40 5.00 0.05 -1.04 16 27 C -0.16 -2.55 7.45 -25.82 -0.19 -2.74 16 28 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.39 10.16 7.92 -40.82 -0.32 9.84 16 30 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 36 H 0.40 2.78 8.47 -40.82 -0.35 2.44 16 37 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 40 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 41 H 0.41 1.90 8.23 -40.82 -0.34 1.57 16 42 H 0.16 1.15 8.06 -52.48 -0.42 0.73 16 43 H 0.16 0.44 8.06 -52.48 -0.42 0.02 16 44 H 0.21 0.02 8.06 -52.49 -0.42 -0.40 16 45 H 0.08 1.38 7.92 -51.93 -0.41 0.97 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 396.78 15.07 5.98 5.98 Total: -1.00 -35.97 396.78 -8.32 -44.30 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.86 Total: 9.30 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -2.41 Total: -2.04 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.24 Total: -58.33 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: 0.23 Total: -16.31 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.97 -8.32 -44.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100960878.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.183 kcal (2) G-P(sol) polarization free energy of solvation -35.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds