Wall clock time and date at job start Tue Mar 31 2020 18:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00078 * 2 1 4 4 H 1.48495 * 109.47086 * 240.00322 * 3 2 1 5 5 H 1.48502 * 109.46865 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47220 * 119.99956 * 3 2 1 7 7 C 1.38810 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00105 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00054 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00453 * 179.97438 * 9 7 2 11 11 C 1.53777 * 113.61806 * 204.99993 * 10 9 7 12 12 C 1.53779 * 87.08122 * 219.93410 * 11 10 9 13 13 C 1.53008 * 113.61317 * 139.97938 * 12 11 10 14 14 N 1.46502 * 109.47144 * 176.52762 * 13 12 11 15 15 C 1.34771 * 120.00230 * 179.97438 * 14 13 12 16 16 O 1.21287 * 119.99435 * 0.02562 * 15 14 13 17 17 C 1.50693 * 120.00299 * 180.02562 * 15 14 13 18 18 C 1.53000 * 109.47435 * 180.02562 * 17 15 14 19 19 N 1.46493 * 109.47245 * 180.02562 * 18 17 15 20 20 C 1.34778 * 119.99793 * 179.97438 * 19 18 17 21 21 O 1.21695 * 120.00192 * 359.97438 * 20 19 18 22 22 C 1.46661 * 119.99796 * 179.97438 * 20 19 18 23 23 C 1.36547 * 125.98711 * 179.97438 * 22 20 19 24 24 C 1.40360 * 106.70833 * 180.02562 * 23 22 20 25 25 C 1.35131 * 107.11647 * 359.97438 * 24 23 22 26 26 O 1.33934 * 108.76477 * 0.02562 * 25 24 23 27 27 C 1.53784 * 87.17440 * 25.39243 * 12 11 10 28 28 H 0.96998 * 119.99698 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99749 * 359.97438 * 9 7 2 30 30 H 1.09003 * 112.84690 * 336.19781 * 10 9 7 31 31 H 1.08999 * 113.61535 * 105.38356 * 11 10 9 32 32 H 1.09000 * 113.61135 * 334.48412 * 11 10 9 33 33 H 1.09000 * 113.61778 * 270.79736 * 12 11 10 34 34 H 1.08999 * 109.46602 * 56.53128 * 13 12 11 35 35 H 1.09001 * 109.47219 * 296.53053 * 13 12 11 36 36 H 0.97006 * 119.99440 * 0.02562 * 14 13 12 37 37 H 1.08997 * 109.47542 * 59.99831 * 17 15 14 38 38 H 1.09001 * 109.46974 * 300.00200 * 17 15 14 39 39 H 1.08997 * 109.47315 * 59.99176 * 18 17 15 40 40 H 1.09001 * 109.46782 * 299.99802 * 18 17 15 41 41 H 0.96998 * 120.00266 * 359.97438 * 19 18 17 42 42 H 1.08005 * 126.64485 * 0.02562 * 23 22 20 43 43 H 1.08003 * 126.44294 * 180.02562 * 24 23 22 44 44 H 1.07997 * 125.61851 * 180.26772 * 25 24 23 45 45 H 1.08994 * 113.61452 * 89.15409 * 27 12 11 46 46 H 1.08996 * 113.60960 * 220.06255 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 6 1.2598 -4.8285 -0.5970 12 6 1.8502 -5.6983 0.5253 13 6 0.8488 -6.6872 1.1255 14 7 1.5242 -7.5217 2.1224 15 6 0.8343 -8.4703 2.7862 16 8 -0.3457 -8.6333 2.5578 17 6 1.5289 -9.3283 3.8119 18 6 0.5276 -10.3172 4.4121 19 7 1.2027 -11.1509 5.4097 20 6 0.5127 -12.0994 6.0736 21 8 -0.6713 -12.2630 5.8446 22 6 1.1887 -12.9344 7.0719 23 6 0.6113 -13.9256 7.8126 24 6 1.6191 -14.4553 8.6334 25 6 2.7534 -13.7734 8.3607 26 8 2.4900 -12.8576 7.4195 27 6 2.0041 -4.4049 1.3429 28 1 -0.4849 0.8401 0.0004 29 1 0.3557 -2.3880 0.0002 30 1 3.0653 -3.5636 -0.4078 31 1 1.5896 -5.1195 -1.5943 32 1 0.1795 -4.7006 -0.5279 33 1 2.7999 -6.1645 0.2627 34 1 0.4451 -7.3201 0.3352 35 1 0.0366 -6.1379 1.6017 36 1 2.4679 -7.3909 2.3052 37 1 1.9327 -8.6951 4.6019 38 1 2.3411 -9.8778 3.3360 39 1 0.1241 -10.9503 3.6219 40 1 -0.2848 -9.7680 4.8879 41 1 2.1463 -11.0203 5.5925 42 1 -0.4211 -14.2408 7.7744 43 1 1.5090 -15.2578 9.3478 44 1 3.7150 -13.9418 8.8226 45 1 1.1277 -4.1610 1.9432 46 1 2.9339 -4.3545 1.9093 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100960878.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:59 Heat of formation + Delta-G solvation = -59.216152 kcal Electronic energy + Delta-G solvation = -26639.126130 eV Core-core repulsion = 22530.104591 eV Total energy + Delta-G solvation = -4109.021539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.64072 -41.07613 -40.50066 -39.75333 -36.52766 -36.00502 -34.99481 -34.06050 -32.64886 -32.07683 -30.66992 -28.66070 -26.44391 -26.09911 -25.29572 -23.53065 -22.68321 -22.38681 -21.75088 -21.29210 -20.43205 -19.61134 -19.03087 -18.16842 -17.48439 -17.35502 -17.18431 -16.97181 -16.66057 -16.49621 -16.20508 -15.86578 -15.44800 -15.20311 -15.12527 -14.83290 -14.44474 -14.13387 -14.07363 -13.94111 -13.56068 -13.41755 -13.22447 -13.02023 -12.98010 -12.89398 -12.62773 -12.49934 -12.23786 -12.07102 -11.64950 -11.58042 -11.53731 -11.10653 -11.05973 -10.88351 -10.76813 -10.40910 -10.05212 -9.65445 -8.96812 -7.93695 -5.22186 0.00007 1.42207 1.47878 1.50901 1.55036 1.57061 1.63238 1.98212 2.04744 2.44909 2.57797 3.38283 3.55049 3.71965 3.76937 3.77986 3.88680 3.94924 4.04311 4.05200 4.13133 4.27640 4.37213 4.44405 4.50759 4.57687 4.61118 4.79002 4.82246 4.84256 4.92082 4.96260 4.99347 5.00928 5.07703 5.16298 5.24551 5.38540 5.38866 5.45527 5.54353 5.75598 5.80982 6.28344 6.35794 6.58773 6.94044 7.28121 7.33816 8.12738 8.34078 9.29673 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025371 B = 0.001394 C = 0.001368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.361035 B =20078.714291 C =20462.671895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.079 4.079 3 Si 0.974 3.026 4 H -0.276 1.276 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.080 0.920 9 N -0.731 5.731 10 C 0.141 3.859 11 C -0.140 4.140 12 C -0.093 4.093 13 C 0.136 3.864 14 N -0.710 5.710 15 C 0.509 3.491 16 O -0.593 6.593 17 C -0.137 4.137 18 C 0.137 3.863 19 N -0.702 5.702 20 C 0.598 3.402 21 O -0.565 6.565 22 C -0.109 4.109 23 C -0.129 4.129 24 C -0.237 4.237 25 C 0.015 3.985 26 O -0.166 6.166 27 C -0.152 4.152 28 H 0.250 0.750 29 H 0.371 0.629 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.125 0.875 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.420 0.580 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.422 0.578 42 H 0.154 0.846 43 H 0.181 0.819 44 H 0.257 0.743 45 H 0.053 0.947 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.586 -31.510 16.117 37.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.271 4.271 3 Si 0.802 3.198 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.368 5.368 10 C 0.032 3.968 11 C -0.179 4.179 12 C -0.112 4.112 13 C 0.012 3.988 14 N -0.362 5.362 15 C 0.296 3.704 16 O -0.474 6.474 17 C -0.176 4.176 18 C 0.012 3.988 19 N -0.354 5.354 20 C 0.386 3.614 21 O -0.446 6.446 22 C -0.160 4.160 23 C -0.149 4.149 24 C -0.256 4.256 25 C -0.054 4.054 26 O -0.062 6.062 27 C -0.193 4.193 28 H 0.058 0.942 29 H 0.202 0.798 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.257 0.743 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.260 0.740 42 H 0.172 0.828 43 H 0.198 0.802 44 H 0.273 0.727 45 H 0.071 0.929 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.283 -31.320 15.591 37.079 hybrid contribution -0.121 1.232 0.139 1.246 sum 12.162 -30.088 15.730 36.064 Atomic orbital electron populations 1.69823 1.06782 1.26058 1.59699 1.25599 0.96325 1.01272 1.03893 0.85209 0.77155 0.79121 0.78270 1.20215 1.22530 1.20286 1.19721 0.91655 0.85396 1.40856 0.90178 1.42639 1.05330 1.01304 1.87551 1.22020 0.95634 0.83797 0.95367 1.23339 0.99813 0.96127 0.98631 1.22463 0.99481 0.92905 0.96307 1.21203 0.94909 0.91994 0.90691 1.45856 1.14612 1.35225 1.40522 1.20986 0.86723 0.80653 0.82006 1.90757 1.18291 1.70718 1.67597 1.21743 0.99332 0.97820 0.98729 1.20941 0.94988 0.92235 0.90591 1.45659 1.14623 1.35010 1.40135 1.16797 0.85357 0.79574 0.79675 1.90896 1.16195 1.70632 1.66896 1.21697 0.83583 1.05104 1.05659 1.22274 1.01891 0.95127 0.95652 1.22226 0.92318 1.05861 1.05201 1.25406 1.02273 0.88095 0.89619 1.84043 1.25270 1.49761 1.47106 1.23735 1.01086 0.96064 0.98421 0.94156 0.79759 0.90012 0.90347 0.91797 0.85672 0.91837 0.93899 0.74277 0.84891 0.84258 0.92125 0.92630 0.73985 0.82821 0.80164 0.72703 0.92865 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.21 13.06 21.65 0.28 -59.92 16 2 C -0.08 -4.53 5.50 84.86 0.47 -4.07 16 3 Si 0.97 45.83 29.55 68.60 2.03 47.85 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.24 -13.42 9.97 84.03 0.84 -12.58 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 9 N -0.73 -36.55 5.41 -320.17 -1.73 -38.28 16 10 C 0.14 5.18 4.48 45.58 0.20 5.38 16 11 C -0.14 -4.15 7.40 31.12 0.23 -3.92 16 12 C -0.09 -2.08 3.75 -10.26 -0.04 -2.11 16 13 C 0.14 3.18 5.50 86.38 0.47 3.65 16 14 N -0.71 -12.08 5.56 -463.05 -2.57 -14.65 16 15 C 0.51 10.30 7.83 87.66 0.69 10.98 16 16 O -0.59 -18.79 15.98 -3.05 -0.05 -18.84 16 17 C -0.14 -1.38 5.81 29.85 0.17 -1.21 16 18 C 0.14 2.40 4.96 86.38 0.43 2.83 16 19 N -0.70 -10.07 5.55 -467.11 -2.59 -12.66 16 20 C 0.60 12.61 7.79 86.44 0.67 13.28 16 21 O -0.57 -17.00 16.86 -4.33 -0.07 -17.07 16 22 C -0.11 -1.81 7.13 24.08 0.17 -1.63 16 23 C -0.13 -1.94 10.62 22.39 0.24 -1.71 16 24 C -0.24 -1.93 10.87 22.07 0.24 -1.69 16 25 C 0.02 0.08 12.08 67.10 0.81 0.89 16 26 O -0.17 -1.81 10.40 -5.01 -0.05 -1.86 16 27 C -0.15 -4.57 7.45 31.18 0.23 -4.34 16 28 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 29 H 0.37 20.31 7.92 -92.71 -0.73 19.57 16 30 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 33 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.04 1.26 7.88 -2.39 -0.02 1.24 16 36 H 0.42 4.00 8.47 -92.70 -0.79 3.22 16 37 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 40 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 41 H 0.42 2.99 8.23 -92.71 -0.76 2.22 16 42 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 43 H 0.18 0.51 8.06 -2.91 -0.02 0.48 16 44 H 0.26 -1.30 8.06 -2.91 -0.02 -1.33 16 45 H 0.05 1.88 7.92 -2.39 -0.02 1.87 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -84.45 396.78 -0.19 -84.64 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -1.26 Total: 27.04 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 5.83 Total: 3.77 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -6.61 Total: -125.52 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.17 Total: -37.77 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -84.45 -0.19 -84.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100960878.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.421 kcal (2) G-P(sol) polarization free energy of solvation -84.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds