Wall clock time and date at job start Tue Mar 31 2020 18:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86808 * 119.99744 * 2 1 4 4 H 1.48503 * 109.46702 * 270.00409 * 3 2 1 5 5 H 1.48498 * 109.47112 * 29.99981 * 3 2 1 6 6 H 1.48496 * 109.46962 * 150.00469 * 3 2 1 7 7 C 1.38947 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37093 * 119.99836 * 179.97438 * 7 2 1 10 10 C 1.34778 * 120.00053 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00490 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47509 * 180.02562 * 12 10 9 14 14 C 1.47683 * 111.37919 * 286.19984 * 13 12 10 15 15 C 1.54383 * 105.01869 * 201.69875 * 14 13 12 16 16 H 1.09002 * 117.60572 * 243.44130 * 15 14 13 17 17 C 1.54260 * 105.05889 * 22.57930 * 15 14 13 18 18 H 1.09005 * 121.78510 * 223.89110 * 17 15 14 19 19 C 1.48558 * 111.00129 * 169.99845 * 13 12 10 20 20 C 1.53001 * 59.72892 * 114.97198 * 17 15 14 21 21 H 1.08996 * 117.44230 * 252.35169 * 20 17 15 22 22 N 1.46498 * 117.44228 * 107.64586 * 20 17 15 23 23 C 1.34773 * 120.00130 * 135.77471 * 22 20 17 24 24 O 1.21740 * 119.99781 * 359.97438 * 23 22 20 25 25 C 1.41795 * 120.00014 * 180.02562 * 23 22 20 26 26 C 1.33463 * 118.78488 * 179.97438 * 25 23 22 27 27 O 1.34349 * 123.07871 * 180.41303 * 26 25 23 28 28 C 1.45353 * 117.48193 * 343.64475 * 27 26 25 29 29 C 1.53489 * 108.26225 * 47.47901 * 28 27 26 30 30 C 1.50415 * 118.79109 * 359.72500 * 25 23 22 31 31 H 0.96994 * 120.00192 * 359.97438 * 1 2 3 32 32 H 0.96998 * 120.00289 * 359.97438 * 9 7 2 33 33 H 1.09007 * 109.46806 * 60.00159 * 12 10 9 34 34 H 1.09000 * 109.46891 * 300.00589 * 12 10 9 35 35 H 1.09001 * 111.28370 * 82.22783 * 14 13 12 36 36 H 1.08997 * 109.12670 * 320.07199 * 14 13 12 37 37 H 1.09002 * 110.40767 * 40.26678 * 19 13 12 38 38 H 1.09001 * 110.51603 * 277.87217 * 19 13 12 39 39 H 0.97004 * 119.99775 * 315.77094 * 22 20 17 40 40 H 1.07996 * 118.45800 * 0.38678 * 26 25 23 41 41 H 1.08999 * 109.70687 * 167.17015 * 28 27 26 42 42 H 1.08996 * 109.70877 * 287.79127 * 28 27 26 43 43 H 1.08998 * 109.70337 * 56.98897 * 29 28 27 44 44 H 1.09000 * 109.70585 * 177.60799 * 29 28 27 45 45 H 1.09002 * 109.45075 * 282.38503 * 30 25 23 46 46 H 1.09002 * 109.45091 * 42.32237 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5457 1.4403 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2032 -0.0011 10 6 4.0539 -2.3704 -0.0011 11 8 3.4475 -3.4209 -0.0011 12 6 5.5608 -2.3704 -0.0022 13 7 6.0506 -3.7553 -0.0026 14 6 5.8694 -4.3908 1.3181 15 6 6.8821 -5.5557 1.3439 16 1 6.4853 -6.5685 1.4150 17 6 7.9572 -5.1752 0.3052 18 1 8.3505 -5.9013 -0.4064 19 6 7.5156 -3.8019 -0.2446 20 6 8.3192 -5.2761 1.7883 21 1 8.5074 -4.3456 2.3238 22 7 9.1308 -6.4209 2.2088 23 6 10.1640 -6.2399 3.0551 24 8 10.4232 -5.1250 3.4696 25 6 10.9498 -7.3480 3.4617 26 6 11.9675 -7.1410 4.2999 27 8 12.7719 -8.1257 4.7340 28 6 12.3087 -9.4932 4.5661 29 6 11.7981 -9.6548 3.1277 30 6 10.6023 -8.7141 2.9369 31 1 -0.4850 0.8400 0.0004 32 1 3.8649 -0.3632 -0.0014 33 1 5.9248 -1.8561 0.8873 34 1 5.9234 -1.8568 -0.8927 35 1 4.8537 -4.7673 1.4400 36 1 6.1034 -3.6663 2.0982 37 1 8.0157 -2.9978 0.2951 38 1 7.7289 -3.7329 -1.3113 39 1 8.9244 -7.3092 1.8783 40 1 12.1534 -6.1347 4.6451 41 1 13.1325 -10.1846 4.7435 42 1 11.5000 -9.6962 5.2681 43 1 12.5899 -9.3948 2.4253 44 1 11.4836 -10.6854 2.9630 45 1 9.7404 -9.1028 3.4792 46 1 10.3624 -8.6451 1.8758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114002959.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:12 Heat of formation + Delta-G solvation = -71.114918 kcal Electronic energy + Delta-G solvation = -27896.980512 eV Core-core repulsion = 23787.443004 eV Total energy + Delta-G solvation = -4109.537508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.84799 -41.17421 -40.20141 -39.61767 -36.44099 -35.86102 -35.27610 -33.78118 -33.44000 -32.47545 -29.46298 -29.26456 -26.76233 -26.57024 -25.42995 -23.57704 -22.29365 -21.99361 -21.42142 -21.15876 -20.15591 -19.88565 -18.92458 -18.09597 -17.67124 -17.07167 -16.84514 -16.80689 -16.38197 -16.20931 -16.14115 -15.72574 -15.32497 -14.99939 -14.93303 -14.84793 -14.52174 -14.40123 -14.14955 -13.97105 -13.93214 -13.64137 -13.38908 -13.14150 -12.99208 -12.53464 -12.48216 -12.40404 -12.28226 -11.99194 -11.90712 -11.80724 -11.63495 -11.49788 -11.11430 -10.98296 -10.41105 -10.23963 -9.93400 -9.48199 -9.35622 -8.41095 -6.01697 0.30783 1.30123 1.35269 1.43958 1.93025 1.96241 2.12534 2.22821 2.32777 2.61652 2.74536 3.14358 3.24335 3.58137 3.63676 3.69606 3.73826 3.82840 3.94874 4.05099 4.13159 4.17972 4.19118 4.29115 4.33839 4.36815 4.45628 4.51827 4.58128 4.61365 4.73671 4.80541 4.90572 4.93444 5.07500 5.10877 5.11564 5.18303 5.22160 5.45293 5.52812 5.83557 5.88350 6.00453 6.16912 6.51817 6.60198 6.88731 7.19210 7.40127 7.97510 8.76565 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031550 B = 0.001788 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.253276 B =15659.660816 C =15942.520714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.964 3.036 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.233 1.233 7 C -0.327 4.327 8 H 0.055 0.945 9 N -0.593 5.593 10 C 0.452 3.548 11 O -0.606 6.606 12 C 0.045 3.955 13 N -0.513 5.513 14 C 0.071 3.929 15 C -0.167 4.167 16 H 0.130 0.870 17 C -0.157 4.157 18 H 0.140 0.860 19 C 0.063 3.937 20 C 0.119 3.881 21 H 0.115 0.885 22 N -0.686 5.686 23 C 0.574 3.426 24 O -0.600 6.600 25 C -0.329 4.329 26 C 0.169 3.831 27 O -0.320 6.320 28 C 0.042 3.958 29 C -0.152 4.152 30 C -0.075 4.075 31 H 0.279 0.721 32 H 0.389 0.611 33 H 0.078 0.922 34 H 0.125 0.875 35 H 0.066 0.934 36 H 0.038 0.962 37 H 0.057 0.943 38 H 0.105 0.895 39 H 0.416 0.584 40 H 0.171 0.829 41 H 0.132 0.868 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.822 -17.541 6.181 35.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.784 3.216 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.157 1.157 7 C -0.456 4.456 8 H 0.073 0.927 9 N -0.235 5.235 10 C 0.240 3.760 11 O -0.490 6.490 12 C -0.087 4.087 13 N -0.237 5.237 14 C -0.057 4.057 15 C -0.187 4.187 16 H 0.147 0.853 17 C -0.177 4.177 18 H 0.158 0.842 19 C -0.064 4.064 20 C 0.012 3.988 21 H 0.133 0.867 22 N -0.336 5.336 23 C 0.367 3.633 24 O -0.485 6.485 25 C -0.333 4.333 26 C 0.100 3.900 27 O -0.230 6.230 28 C -0.031 4.031 29 C -0.189 4.189 30 C -0.112 4.112 31 H 0.088 0.912 32 H 0.224 0.776 33 H 0.096 0.904 34 H 0.143 0.857 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.254 0.746 40 H 0.188 0.812 41 H 0.150 0.850 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.131 0.869 45 H 0.104 0.896 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 30.298 -17.685 6.148 35.616 hybrid contribution -0.595 1.120 0.334 1.312 sum 29.702 -16.565 6.481 34.622 Atomic orbital electron populations 1.69803 1.08087 1.29201 1.50437 1.26098 0.96468 1.02648 0.96136 0.85374 0.79409 0.76812 0.79980 1.18027 1.20016 1.15689 1.18995 0.81445 0.94923 1.50263 0.92655 1.42031 1.05833 1.07530 1.68114 1.20835 0.90670 0.83361 0.81134 1.90532 1.71246 1.32648 1.54538 1.21998 0.90714 0.91370 1.04600 1.64625 1.14558 1.15143 1.29410 1.22318 0.98887 0.94887 0.89561 1.23792 0.89000 1.00267 1.05647 0.85251 1.23997 1.02502 0.99349 0.91861 0.84248 1.22722 0.85854 0.95218 1.02623 1.21486 0.90634 0.91647 0.95084 0.86695 1.45064 1.30475 1.10448 1.47586 1.16981 0.79956 0.88672 0.77645 1.90802 1.71554 1.27635 1.58474 1.20013 1.05134 0.97439 1.10738 1.22947 0.86526 0.93025 0.87456 1.86284 1.44101 1.16971 1.75632 1.23929 1.02494 0.78879 0.97765 1.22218 0.98223 1.02018 0.96478 1.20392 0.99209 0.89628 1.01996 0.91168 0.77562 0.90417 0.85748 0.91544 0.94366 0.92469 0.87720 0.74589 0.81240 0.85000 0.89861 0.90691 0.86945 0.89640 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.96 21.66 0.30 -56.72 16 2 C -0.02 -0.85 5.50 84.92 0.47 -0.38 16 3 Si 0.96 39.51 27.74 68.60 1.90 41.41 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.23 -8.14 6.52 99.48 0.65 -7.49 16 7 C -0.33 -19.49 10.16 84.04 0.85 -18.63 16 8 H 0.06 3.92 7.39 -2.91 -0.02 3.89 16 9 N -0.59 -28.63 5.09 -306.99 -1.56 -30.20 16 10 C 0.45 21.03 7.63 87.66 0.67 21.70 16 11 O -0.61 -34.28 14.77 -3.08 -0.05 -34.33 16 12 C 0.04 1.44 5.32 85.56 0.46 1.89 16 13 N -0.51 -16.02 4.93 -888.45 -4.38 -20.40 16 14 C 0.07 2.23 5.73 86.62 0.50 2.73 16 15 C -0.17 -3.85 7.03 -9.90 -0.07 -3.92 16 16 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 17 C -0.16 -3.09 7.05 -9.90 -0.07 -3.16 16 18 H 0.14 2.19 8.14 -2.38 -0.02 2.17 16 19 C 0.06 1.40 6.28 86.45 0.54 1.94 16 20 C 0.12 2.51 6.00 44.99 0.27 2.78 16 21 H 0.12 2.95 7.40 -2.39 -0.02 2.93 16 22 N -0.69 -11.80 5.48 -451.35 -2.47 -14.28 16 23 C 0.57 12.08 7.53 85.12 0.64 12.72 16 24 O -0.60 -17.64 15.48 -4.48 -0.07 -17.71 16 25 C -0.33 -4.89 5.69 -20.16 -0.11 -5.00 16 26 C 0.17 2.55 10.47 66.74 0.70 3.25 16 27 O -0.32 -3.99 10.48 -76.18 -0.80 -4.79 16 28 C 0.04 0.22 7.15 72.15 0.52 0.74 16 29 C -0.15 -0.65 6.24 30.87 0.19 -0.45 16 30 C -0.08 -0.57 5.10 29.87 0.15 -0.42 16 31 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 32 H 0.39 15.59 5.76 -92.71 -0.53 15.06 16 33 H 0.08 2.16 7.75 -2.38 -0.02 2.14 16 34 H 0.12 3.24 8.08 -2.39 -0.02 3.22 16 35 H 0.07 2.57 7.24 -2.39 -0.02 2.55 16 36 H 0.04 1.17 7.69 -2.39 -0.02 1.15 16 37 H 0.06 1.17 8.00 -2.39 -0.02 1.15 16 38 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.42 4.67 6.93 -92.71 -0.64 4.02 16 40 H 0.17 2.81 7.21 -2.91 -0.02 2.79 16 41 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 45 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.09 0.50 7.14 -2.39 -0.02 0.49 16 Total: -1.00 -84.53 375.57 -1.63 -86.17 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -0.21 Total: 35.06 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 5.70 Total: 15.78 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -8.11 Total: -121.59 kcal Atomic # 8 Polarization: -55.91 SS G_CDS: -0.91 Total: -56.83 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 1.90 Total: 41.41 kcal Total: -84.53 -1.63 -86.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114002959.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.050 kcal (2) G-P(sol) polarization free energy of solvation -84.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds