Wall clock time and date at job start Tue Mar 31 2020 19:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48504 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47157 * 300.00112 * 3 2 1 6 6 H 1.48500 * 109.47229 * 60.00482 * 3 2 1 7 7 C 1.38814 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99988 * 170.65880 * 7 2 1 9 9 N 1.36932 * 119.99916 * 350.65388 * 7 2 1 10 10 C 1.48145 * 127.83765 * 164.89825 * 9 7 2 11 11 C 1.54389 * 104.61526 * 140.41579 * 10 9 7 12 12 H 1.09004 * 118.18628 * 244.20016 * 11 10 9 13 13 C 1.54148 * 104.96499 * 23.83343 * 11 10 9 14 14 H 1.08997 * 121.78840 * 222.19326 * 13 11 10 15 15 C 1.51691 * 127.61490 * 345.17965 * 9 7 2 16 16 C 1.53008 * 118.12200 * 87.19694 * 11 10 9 17 17 H 1.08997 * 117.43879 * 16.05836 * 16 11 10 18 18 N 1.46496 * 117.44528 * 160.80998 * 16 11 10 19 19 C 1.34779 * 119.99621 * 224.00119 * 18 16 11 20 20 O 1.21273 * 120.00117 * 359.71839 * 19 18 16 21 21 C 1.50702 * 119.99629 * 179.72206 * 19 18 16 22 22 C 1.53000 * 109.47038 * 179.97438 * 21 19 18 23 23 C 1.53000 * 109.47129 * 179.97438 * 22 21 19 24 24 N 1.46496 * 109.47067 * 180.02562 * 23 22 21 25 25 C 1.33882 * 122.76379 * 269.71197 * 24 23 22 26 26 O 1.21231 * 125.39196 * 359.97393 * 25 24 23 27 27 C 1.51313 * 109.20951 * 179.84308 * 25 24 23 28 28 C 1.54224 * 103.55397 * 0.38521 * 27 25 24 29 29 C 1.33878 * 122.76496 * 90.00186 * 24 23 22 30 30 O 1.21224 * 125.39014 * 0.02562 * 29 24 23 31 31 H 0.97001 * 120.00244 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.40603 * 21.64082 * 10 9 7 33 33 H 1.08993 * 110.41157 * 259.20301 * 10 9 7 34 34 H 1.09006 * 111.96254 * 100.89887 * 15 9 7 35 35 H 1.09004 * 110.49447 * 337.32968 * 15 9 7 36 36 H 0.97000 * 120.00193 * 43.71637 * 18 16 11 37 37 H 1.09001 * 109.47373 * 300.00089 * 21 19 18 38 38 H 1.09006 * 109.47435 * 59.99993 * 21 19 18 39 39 H 1.08991 * 109.47011 * 299.99969 * 22 21 19 40 40 H 1.09003 * 109.46867 * 60.00403 * 22 21 19 41 41 H 1.09001 * 109.47412 * 300.00455 * 23 22 21 42 42 H 1.09003 * 109.46832 * 60.00485 * 23 22 21 43 43 H 1.08996 * 110.79394 * 241.78049 * 27 25 24 44 44 H 1.08996 * 110.41430 * 118.81034 * 27 25 24 45 45 H 1.09000 * 110.60909 * 241.25972 * 28 27 25 46 46 H 1.09002 * 110.73999 * 118.35508 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0795 -1.2083 -0.1523 9 7 1.3392 -2.3802 0.1915 10 6 1.8228 -3.7552 -0.0738 11 6 1.2863 -4.5916 1.1078 12 1 2.0080 -5.0449 1.7874 13 6 0.0629 -3.8098 1.6258 14 1 -0.1268 -3.6806 2.6914 15 6 -0.0706 -2.5674 0.7192 16 6 -0.1171 -5.1896 0.9896 17 1 -0.5637 -5.2302 -0.0039 18 7 -0.4531 -6.3044 1.8786 19 6 -1.1050 -7.3799 1.3939 20 8 -1.4179 -7.4225 0.2231 21 6 -1.4451 -8.5295 2.3072 22 6 -2.1784 -9.6121 1.5128 23 6 -2.5232 -10.7795 2.4398 24 7 -3.2248 -11.8164 1.6790 25 6 -4.5574 -11.8462 1.5533 26 8 -5.3264 -11.0444 2.0384 27 6 -4.9511 -13.0373 0.7073 28 6 -3.6015 -13.7034 0.3705 29 6 -2.5866 -12.8154 1.0569 30 8 -1.3860 -12.9824 1.0458 31 1 -0.4850 0.8400 0.0004 32 1 2.9124 -3.7780 -0.0916 33 1 1.4185 -4.1252 -1.0159 34 1 -0.7842 -2.7568 -0.0826 35 1 -0.3770 -1.7006 1.3050 36 1 -0.2029 -6.2704 2.8151 37 1 -0.5284 -8.9441 2.7264 38 1 -2.0859 -8.1749 3.1145 39 1 -3.0952 -9.1973 1.0940 40 1 -1.5379 -9.9669 0.7053 41 1 -1.6062 -11.1942 2.8583 42 1 -3.1635 -10.4251 3.2476 43 1 -5.4575 -12.7152 -0.2025 44 1 -5.5826 -13.7175 1.2788 45 1 -3.4366 -13.7127 -0.7069 46 1 -3.5597 -14.7156 0.7726 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114371732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:58 Heat of formation + Delta-G solvation = -42.656816 kcal Electronic energy + Delta-G solvation = -27684.223545 eV Core-core repulsion = 23575.920073 eV Total energy + Delta-G solvation = -4108.303472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.31022 -39.87250 -38.99625 -38.30168 -36.38908 -35.25998 -34.36330 -32.78250 -32.28618 -30.20025 -27.63620 -27.13125 -26.68050 -25.55215 -23.20558 -22.84886 -21.58227 -20.53221 -20.10781 -19.85618 -19.20766 -17.84325 -17.46657 -16.94984 -16.88767 -16.68113 -16.23076 -15.89902 -15.21863 -14.69613 -14.67035 -14.50300 -14.41571 -14.15375 -14.06884 -13.61313 -13.36390 -13.19377 -12.85141 -12.71397 -12.45914 -12.18166 -12.10672 -11.93522 -11.49359 -11.46489 -11.15817 -11.05136 -11.00009 -10.84334 -10.48982 -10.43418 -10.23093 -10.20053 -10.12506 -9.82809 -9.67017 -9.20083 -8.74857 -8.33944 -6.87504 -5.78674 -3.11698 1.04436 2.01889 2.24041 2.62359 3.12311 3.38645 3.44459 3.46977 3.55700 3.69303 3.88297 4.27338 4.30603 4.44635 4.48343 4.50177 4.55799 4.89109 4.91999 4.96819 5.02355 5.02495 5.06232 5.15350 5.21024 5.30638 5.35531 5.38619 5.56385 5.67178 5.79403 5.89463 5.92443 6.14824 6.23106 6.35885 6.53074 6.69423 6.79647 6.84123 6.89479 7.30158 7.30622 7.51441 7.57003 7.70332 8.15028 8.27399 9.06917 9.73434 10.50203 11.36477 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.032871 B = 0.001682 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.616192 B =16639.983329 C =16956.566902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.224 4.224 8 H 0.078 0.922 9 N -0.598 5.598 10 C 0.158 3.842 11 C -0.182 4.182 12 H 0.103 0.897 13 C -0.178 4.178 14 H 0.101 0.899 15 C 0.185 3.815 16 C 0.094 3.906 17 H 0.131 0.869 18 N -0.698 5.698 19 C 0.515 3.485 20 O -0.539 6.539 21 C -0.136 4.136 22 C -0.119 4.119 23 C 0.097 3.903 24 N -0.574 5.574 25 C 0.525 3.475 26 O -0.478 6.478 27 C -0.157 4.157 28 C -0.157 4.157 29 C 0.525 3.475 30 O -0.479 6.479 31 H 0.254 0.746 32 H 0.052 0.948 33 H 0.026 0.974 34 H 0.032 0.968 35 H 0.092 0.908 36 H 0.399 0.601 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.122 0.878 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 -29.547 6.834 31.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.205 4.205 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.352 4.352 8 H 0.095 0.905 9 N -0.323 5.323 10 C 0.031 3.969 11 C -0.204 4.204 12 H 0.121 0.879 13 C -0.199 4.199 14 H 0.119 0.881 15 C 0.060 3.940 16 C -0.012 4.012 17 H 0.148 0.852 18 N -0.347 5.347 19 C 0.301 3.699 20 O -0.415 6.415 21 C -0.177 4.177 22 C -0.157 4.157 23 C -0.023 4.023 24 N -0.317 5.317 25 C 0.314 3.686 26 O -0.349 6.349 27 C -0.197 4.197 28 C -0.197 4.197 29 C 0.314 3.686 30 O -0.350 6.350 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.050 0.950 35 H 0.110 0.890 36 H 0.233 0.767 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.140 0.860 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.933 -28.936 6.226 30.917 hybrid contribution 0.649 0.962 0.665 1.337 sum -8.285 -27.974 6.891 29.978 Atomic orbital electron populations 1.69895 1.05044 1.25274 1.56104 1.24877 0.95648 0.97924 1.02021 0.86045 0.78847 0.83593 0.77254 1.20401 1.21721 1.21671 1.19060 0.90843 0.82424 1.42878 0.90469 1.46046 1.12416 0.99755 1.74100 1.21060 0.97095 0.85861 0.92844 1.24360 0.90488 1.02429 1.03110 0.87946 1.24565 1.02391 0.92505 1.00425 0.88053 1.21676 0.86436 0.92265 0.93579 1.21881 0.98540 0.85083 0.95692 0.85152 1.45410 1.58384 1.18175 1.12719 1.20510 0.77374 0.83179 0.88832 1.90715 1.53067 1.80158 1.17609 1.21541 1.02590 0.94556 0.98985 1.21625 1.02010 0.93784 0.98326 1.21851 0.98267 0.87653 0.94572 1.46766 1.09692 1.26883 1.48335 1.20871 0.81308 0.86591 0.79840 1.90809 1.54630 1.42329 1.47153 1.22481 0.98740 0.96150 1.02320 1.22483 0.92319 1.00719 1.04198 1.20866 0.89091 0.80996 0.77629 1.90803 1.14041 1.72100 1.58056 0.93619 0.92999 0.95642 0.95003 0.89015 0.76723 0.88477 0.88432 0.90344 0.90380 0.88667 0.88631 0.85950 0.86151 0.86005 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.03 10.84 55.49 0.60 -26.43 16 2 C -0.01 -0.22 5.41 -17.43 -0.09 -0.32 16 3 Si 0.91 22.07 29.56 -169.99 -5.03 17.04 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.22 -6.29 10.36 -15.06 -0.16 -6.44 16 8 H 0.08 2.10 7.85 -52.49 -0.41 1.69 16 9 N -0.60 -15.51 3.45 -165.83 -0.57 -16.08 16 10 C 0.16 3.40 7.05 -2.41 -0.02 3.38 16 11 C -0.18 -3.28 7.05 -89.29 -0.63 -3.91 16 12 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 13 C -0.18 -3.35 6.96 -89.29 -0.62 -3.97 16 14 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 15 C 0.19 4.47 5.91 -0.38 0.00 4.47 16 16 C 0.09 1.60 5.98 -67.92 -0.41 1.19 16 17 H 0.13 2.56 7.40 -51.93 -0.38 2.17 16 18 N -0.70 -9.17 5.56 -53.80 -0.30 -9.47 16 19 C 0.51 6.96 7.83 -10.98 -0.09 6.87 16 20 O -0.54 -9.71 15.55 5.56 0.09 -9.63 16 21 C -0.14 -1.17 5.70 -27.88 -0.16 -1.33 16 22 C -0.12 -1.14 4.83 -26.73 -0.13 -1.26 16 23 C 0.10 0.72 5.56 -4.04 -0.02 0.70 16 24 N -0.57 -4.26 2.55 -115.34 -0.29 -4.55 16 25 C 0.53 3.80 8.08 -11.08 -0.09 3.71 16 26 O -0.48 -5.24 17.47 5.60 0.10 -5.14 16 27 C -0.16 -0.40 7.03 -26.94 -0.19 -0.59 16 28 C -0.16 -0.40 7.03 -26.94 -0.19 -0.59 16 29 C 0.53 3.77 8.08 -11.08 -0.09 3.68 16 30 O -0.48 -5.19 17.48 5.61 0.10 -5.09 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 2.45 6.58 -51.93 -0.34 2.10 16 36 H 0.40 3.96 8.83 -40.82 -0.36 3.60 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 40 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 41 H 0.09 0.63 7.83 -51.93 -0.41 0.22 16 42 H 0.10 0.64 7.82 -51.93 -0.41 0.23 16 43 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.12 0.08 8.14 -51.93 -0.42 -0.34 16 45 H 0.12 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.12 0.07 8.14 -51.93 -0.42 -0.35 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -37.32 387.01 -9.29 -46.61 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.94 Total: 1.31 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -2.88 Total: 5.59 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.56 Total: -56.53 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: 0.28 Total: -19.86 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.32 -9.29 -46.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114371732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.954 kcal (2) G-P(sol) polarization free energy of solvation -37.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds