Wall clock time and date at job start Tue Mar 31 2020 19:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48504 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47157 * 300.00112 * 3 2 1 6 6 H 1.48500 * 109.47229 * 60.00482 * 3 2 1 7 7 C 1.38814 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99988 * 170.65880 * 7 2 1 9 9 N 1.36932 * 119.99916 * 350.65388 * 7 2 1 10 10 C 1.48145 * 127.83765 * 164.89825 * 9 7 2 11 11 C 1.54389 * 104.61526 * 140.41579 * 10 9 7 12 12 H 1.09004 * 118.18628 * 244.20016 * 11 10 9 13 13 C 1.54148 * 104.96499 * 23.83343 * 11 10 9 14 14 H 1.08997 * 121.78840 * 222.19326 * 13 11 10 15 15 C 1.51691 * 127.61490 * 345.17965 * 9 7 2 16 16 C 1.53008 * 118.12200 * 87.19694 * 11 10 9 17 17 H 1.08997 * 117.43879 * 16.05836 * 16 11 10 18 18 N 1.46496 * 117.44528 * 160.80998 * 16 11 10 19 19 C 1.34779 * 119.99621 * 224.00119 * 18 16 11 20 20 O 1.21273 * 120.00117 * 359.71839 * 19 18 16 21 21 C 1.50702 * 119.99629 * 179.72206 * 19 18 16 22 22 C 1.53000 * 109.47038 * 179.97438 * 21 19 18 23 23 C 1.53000 * 109.47129 * 179.97438 * 22 21 19 24 24 N 1.46496 * 109.47067 * 180.02562 * 23 22 21 25 25 C 1.33882 * 122.76379 * 269.71197 * 24 23 22 26 26 O 1.21231 * 125.39196 * 359.97393 * 25 24 23 27 27 C 1.51313 * 109.20951 * 179.84308 * 25 24 23 28 28 C 1.54224 * 103.55397 * 0.38521 * 27 25 24 29 29 C 1.33878 * 122.76496 * 90.00186 * 24 23 22 30 30 O 1.21224 * 125.39014 * 0.02562 * 29 24 23 31 31 H 0.97001 * 120.00244 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.40603 * 21.64082 * 10 9 7 33 33 H 1.08993 * 110.41157 * 259.20301 * 10 9 7 34 34 H 1.09006 * 111.96254 * 100.89887 * 15 9 7 35 35 H 1.09004 * 110.49447 * 337.32968 * 15 9 7 36 36 H 0.97000 * 120.00193 * 43.71637 * 18 16 11 37 37 H 1.09001 * 109.47373 * 300.00089 * 21 19 18 38 38 H 1.09006 * 109.47435 * 59.99993 * 21 19 18 39 39 H 1.08991 * 109.47011 * 299.99969 * 22 21 19 40 40 H 1.09003 * 109.46867 * 60.00403 * 22 21 19 41 41 H 1.09001 * 109.47412 * 300.00455 * 23 22 21 42 42 H 1.09003 * 109.46832 * 60.00485 * 23 22 21 43 43 H 1.08996 * 110.79394 * 241.78049 * 27 25 24 44 44 H 1.08996 * 110.41430 * 118.81034 * 27 25 24 45 45 H 1.09000 * 110.60909 * 241.25972 * 28 27 25 46 46 H 1.09002 * 110.73999 * 118.35508 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0795 -1.2083 -0.1523 9 7 1.3392 -2.3802 0.1915 10 6 1.8228 -3.7552 -0.0738 11 6 1.2863 -4.5916 1.1078 12 1 2.0080 -5.0449 1.7874 13 6 0.0629 -3.8098 1.6258 14 1 -0.1268 -3.6806 2.6914 15 6 -0.0706 -2.5674 0.7192 16 6 -0.1171 -5.1896 0.9896 17 1 -0.5637 -5.2302 -0.0039 18 7 -0.4531 -6.3044 1.8786 19 6 -1.1050 -7.3799 1.3939 20 8 -1.4179 -7.4225 0.2231 21 6 -1.4451 -8.5295 2.3072 22 6 -2.1784 -9.6121 1.5128 23 6 -2.5232 -10.7795 2.4398 24 7 -3.2248 -11.8164 1.6790 25 6 -4.5574 -11.8462 1.5533 26 8 -5.3264 -11.0444 2.0384 27 6 -4.9511 -13.0373 0.7073 28 6 -3.6015 -13.7034 0.3705 29 6 -2.5866 -12.8154 1.0569 30 8 -1.3860 -12.9824 1.0458 31 1 -0.4850 0.8400 0.0004 32 1 2.9124 -3.7780 -0.0916 33 1 1.4185 -4.1252 -1.0159 34 1 -0.7842 -2.7568 -0.0826 35 1 -0.3770 -1.7006 1.3050 36 1 -0.2029 -6.2704 2.8151 37 1 -0.5284 -8.9441 2.7264 38 1 -2.0859 -8.1749 3.1145 39 1 -3.0952 -9.1973 1.0940 40 1 -1.5379 -9.9669 0.7053 41 1 -1.6062 -11.1942 2.8583 42 1 -3.1635 -10.4251 3.2476 43 1 -5.4575 -12.7152 -0.2025 44 1 -5.5826 -13.7175 1.2788 45 1 -3.4366 -13.7127 -0.7069 46 1 -3.5597 -14.7156 0.7726 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114371732.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:57 Heat of formation + Delta-G solvation = -69.513038 kcal Electronic energy + Delta-G solvation = -27685.388119 eV Core-core repulsion = 23575.920073 eV Total energy + Delta-G solvation = -4109.468046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.83322 -41.14225 -39.79279 -39.63393 -37.05563 -36.07686 -35.77329 -34.36063 -33.03923 -31.98252 -28.95079 -28.48490 -27.35663 -27.08302 -24.26725 -23.27913 -23.07286 -21.98530 -21.31025 -20.82653 -20.46554 -18.87995 -18.54081 -18.04261 -17.60919 -17.56820 -17.51494 -16.77541 -16.70671 -15.87070 -15.58940 -15.29102 -15.24321 -15.13071 -14.86046 -14.81466 -14.72361 -14.62141 -13.81004 -13.70261 -13.46327 -13.34530 -13.28791 -13.01572 -12.92523 -12.82474 -12.75518 -12.16160 -12.10550 -12.01229 -11.90614 -11.86489 -11.66014 -11.62197 -11.08852 -11.06622 -10.90280 -10.82436 -10.70375 -9.72662 -8.95793 -7.92982 -5.28761 0.50680 1.45928 1.46513 1.50775 1.52612 1.57909 1.73961 2.00753 2.47457 2.83398 3.24033 3.27548 3.29856 3.48483 3.60451 3.64939 3.80075 3.82451 3.85110 3.91167 4.09957 4.15801 4.24010 4.34960 4.36071 4.39335 4.48616 4.58477 4.61605 4.78375 4.82439 4.90010 4.91248 4.93431 4.94765 4.95653 5.14163 5.24960 5.37569 5.42998 5.52009 5.61758 5.83789 6.10129 6.32549 6.51919 6.75823 6.93543 7.22555 7.63071 8.42947 9.21886 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.032871 B = 0.001682 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.616192 B =16639.983329 C =16956.566902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.238 4.238 8 H 0.083 0.917 9 N -0.622 5.622 10 C 0.150 3.850 11 C -0.165 4.165 12 H 0.138 0.862 13 C -0.176 4.176 14 H 0.128 0.872 15 C 0.187 3.813 16 C 0.113 3.887 17 H 0.100 0.900 18 N -0.683 5.683 19 C 0.510 3.490 20 O -0.591 6.591 21 C -0.124 4.124 22 C -0.111 4.111 23 C 0.097 3.903 24 N -0.581 5.581 25 C 0.518 3.482 26 O -0.523 6.523 27 C -0.144 4.144 28 C -0.144 4.144 29 C 0.519 3.481 30 O -0.522 6.522 31 H 0.250 0.750 32 H 0.064 0.936 33 H 0.014 0.986 34 H 0.002 0.998 35 H 0.061 0.939 36 H 0.420 0.580 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.139 0.861 44 H 0.148 0.852 45 H 0.139 0.861 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.434 -32.051 8.543 34.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.367 4.367 8 H 0.101 0.899 9 N -0.348 5.348 10 C 0.024 3.976 11 C -0.186 4.186 12 H 0.155 0.845 13 C -0.197 4.197 14 H 0.146 0.854 15 C 0.062 3.938 16 C 0.006 3.994 17 H 0.118 0.882 18 N -0.333 5.333 19 C 0.299 3.701 20 O -0.471 6.471 21 C -0.163 4.163 22 C -0.150 4.150 23 C -0.024 4.024 24 N -0.323 5.323 25 C 0.310 3.690 26 O -0.397 6.397 27 C -0.183 4.183 28 C -0.183 4.183 29 C 0.311 3.689 30 O -0.396 6.396 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.032 0.968 34 H 0.020 0.980 35 H 0.080 0.920 36 H 0.258 0.742 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.157 0.843 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.408 -31.494 7.969 33.557 hybrid contribution 0.468 1.697 0.050 1.761 sum -7.939 -29.798 8.019 31.863 Atomic orbital electron populations 1.70096 1.06589 1.25689 1.57436 1.25754 0.96524 1.01342 1.02287 0.84963 0.78283 0.79026 0.76725 1.18790 1.22071 1.21585 1.19459 0.91408 0.83604 1.42211 0.89932 1.46374 1.12918 1.00867 1.74618 1.21197 0.97880 0.84542 0.93934 1.24266 0.91011 1.01680 1.01630 0.84473 1.24251 1.03802 0.91028 1.00601 0.85416 1.21416 0.85502 0.93717 0.93179 1.21377 0.97615 0.85426 0.95016 0.88205 1.45222 1.58082 1.16793 1.13235 1.21438 0.76006 0.83880 0.88780 1.90706 1.54966 1.81156 1.20239 1.21581 1.04552 0.92051 0.98162 1.21501 1.00363 0.94869 0.98312 1.21829 0.99109 0.87206 0.94282 1.46986 1.10166 1.26909 1.48240 1.21717 0.80747 0.87169 0.79352 1.90784 1.55460 1.44303 1.49173 1.22594 0.99177 0.94248 1.02277 1.22596 0.90164 1.00833 1.04706 1.21702 0.89219 0.81074 0.76935 1.90778 1.16039 1.73168 1.59658 0.94118 0.91785 0.96819 0.97966 0.92032 0.74167 0.85114 0.85361 0.92957 0.92778 0.87595 0.87722 0.84317 0.83394 0.84336 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.03 10.84 21.65 0.23 -57.79 16 2 C -0.07 -3.78 5.41 84.86 0.46 -3.32 16 3 Si 0.98 45.99 29.56 68.60 2.03 48.02 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 7 C -0.24 -13.56 10.36 84.03 0.87 -12.69 16 8 H 0.08 4.48 7.85 -2.91 -0.02 4.46 16 9 N -0.62 -32.95 3.45 -678.57 -2.34 -35.29 16 10 C 0.15 6.46 7.05 86.53 0.61 7.07 16 11 C -0.16 -5.65 7.05 -9.93 -0.07 -5.72 16 12 H 0.14 3.83 8.14 -2.38 -0.02 3.81 16 13 C -0.18 -6.52 6.96 -9.93 -0.07 -6.59 16 14 H 0.13 4.08 8.14 -2.39 -0.02 4.06 16 15 C 0.19 9.37 5.91 85.82 0.51 9.88 16 16 C 0.11 3.78 5.98 45.00 0.27 4.05 16 17 H 0.10 4.05 7.40 -2.39 -0.02 4.04 16 18 N -0.68 -16.43 5.56 -442.52 -2.46 -18.89 16 19 C 0.51 13.20 7.83 87.66 0.69 13.89 16 20 O -0.59 -21.77 15.55 -3.01 -0.05 -21.82 16 21 C -0.12 -1.84 5.70 29.85 0.17 -1.67 16 22 C -0.11 -2.10 4.83 30.59 0.15 -1.96 16 23 C 0.10 1.35 5.56 86.38 0.48 1.83 16 24 N -0.58 -8.14 2.55 -756.65 -1.93 -10.07 16 25 C 0.52 6.95 8.08 87.99 0.71 7.67 16 26 O -0.52 -11.36 17.47 -2.88 -0.05 -11.41 16 27 C -0.14 -0.33 7.03 30.46 0.21 -0.11 16 28 C -0.14 -0.31 7.03 30.46 0.21 -0.09 16 29 C 0.52 6.83 8.08 87.99 0.71 7.54 16 30 O -0.52 -11.08 17.48 -2.86 -0.05 -11.13 16 31 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 35 H 0.06 3.44 6.58 -2.39 -0.02 3.42 16 36 H 0.42 6.70 8.83 -92.71 -0.82 5.88 16 37 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 40 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 41 H 0.11 1.24 7.83 -2.39 -0.02 1.23 16 42 H 0.10 1.26 7.82 -2.39 -0.02 1.24 16 43 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 44 H 0.15 -0.39 8.14 -2.39 -0.02 -0.41 16 45 H 0.14 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.15 -0.43 8.14 -2.39 -0.02 -0.44 16 Total: -1.00 -87.56 387.01 1.48 -86.08 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 0.19 Total: 12.53 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 5.91 Total: 19.78 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -6.50 Total: -122.05 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -0.15 Total: -44.36 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -87.56 1.48 -86.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114371732.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.567 kcal (2) G-P(sol) polarization free energy of solvation -87.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds