Wall clock time and date at job start Tue Mar 31 2020 19:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86805 * 119.99517 * 2 1 4 4 H 1.48504 * 109.47148 * 269.99853 * 3 2 1 5 5 H 1.48495 * 109.47213 * 30.00056 * 3 2 1 6 6 H 1.48501 * 109.47068 * 149.99807 * 3 2 1 7 7 C 1.38948 * 120.00800 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99500 * 359.97438 * 7 2 1 9 9 N 1.37088 * 120.00544 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00428 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99686 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00194 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.46960 * 180.02562 * 12 10 9 14 14 C 1.48567 * 110.99706 * 285.41715 * 13 12 10 15 15 C 1.57594 * 104.64902 * 200.33623 * 14 13 12 16 16 H 1.09004 * 120.24177 * 244.57448 * 15 14 13 17 17 C 1.54261 * 103.52799 * 24.69793 * 15 14 13 18 18 H 1.09001 * 121.78521 * 220.66607 * 17 15 14 19 19 C 1.48555 * 110.99821 * 170.00411 * 13 12 10 20 20 C 1.52996 * 59.72847 * 112.62802 * 17 15 14 21 21 H 1.08997 * 117.44616 * 252.39410 * 20 17 15 22 22 N 1.46510 * 117.44238 * 107.64410 * 20 17 15 23 23 C 1.34776 * 119.99970 * 154.99984 * 22 20 17 24 24 O 1.21290 * 119.99703 * 359.97438 * 23 22 20 25 25 C 1.50696 * 120.00138 * 180.02562 * 23 22 20 26 26 H 1.09004 * 115.48165 * 325.32689 * 25 23 22 27 27 C 1.55592 * 117.96055 * 111.13846 * 25 23 22 28 28 H 1.09000 * 120.88093 * 355.57933 * 27 25 23 29 29 C 1.54475 * 118.08307 * 197.34528 * 27 25 23 30 30 O 1.44433 * 104.80530 * 273.79393 * 29 27 25 31 31 C 1.44429 * 105.26998 * 40.51499 * 30 29 27 32 32 C 1.52999 * 117.43298 * 180.02562 * 25 23 22 33 33 H 1.09002 * 119.80945 * 4.63232 * 32 25 23 34 34 H 0.96994 * 120.00310 * 359.97438 * 1 2 3 35 35 H 0.97009 * 119.99832 * 0.02562 * 9 7 2 36 36 H 1.08998 * 109.47185 * 60.00291 * 12 10 9 37 37 H 1.09001 * 109.47238 * 299.99981 * 12 10 9 38 38 H 1.08999 * 110.41081 * 319.73769 * 14 13 12 39 39 H 1.08996 * 110.40953 * 82.18240 * 14 13 12 40 40 H 1.09002 * 110.41680 * 40.25628 * 19 13 12 41 41 H 1.09003 * 110.51031 * 277.86463 * 19 13 12 42 42 H 0.96996 * 120.00136 * 334.99846 * 22 20 17 43 43 H 1.09005 * 110.37201 * 154.96675 * 29 27 25 44 44 H 1.08996 * 110.37619 * 32.62766 * 29 27 25 45 45 H 1.09003 * 110.36685 * 200.65441 * 31 30 29 46 46 H 1.08997 * 110.46804 * 78.36668 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0466 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5455 1.4404 0.7001 7 6 2.0090 -1.2032 0.0005 8 1 1.4691 -2.1386 0.0014 9 7 3.3799 -1.2032 0.0000 10 6 4.0539 -2.3703 0.0000 11 8 3.4475 -3.4207 0.0000 12 6 5.5609 -2.3702 0.0000 13 7 6.0507 -3.7551 -0.0006 14 6 5.8805 -4.3806 1.3362 15 6 6.8898 -5.5909 1.3414 16 1 6.5196 -6.6142 1.4045 17 6 7.9571 -5.1751 0.3081 18 1 8.3813 -5.8889 -0.3980 19 6 7.5158 -3.8016 -0.2414 20 6 8.3180 -5.2765 1.7914 21 1 8.4796 -4.3450 2.3339 22 7 9.1584 -6.4025 2.2064 23 6 9.9148 -6.3052 3.3176 24 8 9.9000 -5.2853 3.9739 25 6 10.7797 -7.4632 3.7442 26 1 10.3699 -8.4533 3.5442 27 6 12.3234 -7.2973 3.6419 28 1 12.7619 -6.3994 3.2065 29 6 13.1957 -8.5716 3.6776 30 8 13.4098 -8.8332 5.0818 31 6 12.1420 -8.5598 5.7173 32 6 11.6138 -7.2894 5.0150 33 1 11.5087 -6.3839 5.6125 34 1 -0.4850 0.8400 0.0004 35 1 3.8649 -0.3630 -0.0004 36 1 5.9242 -1.8564 0.8900 37 1 5.9242 -1.8563 -0.8900 38 1 6.1244 -3.6672 2.1234 39 1 4.8614 -4.7478 1.4571 40 1 8.0156 -2.9976 0.2990 41 1 7.7300 -3.7322 -1.3079 42 1 9.1705 -7.2180 1.6814 43 1 14.1468 -8.3946 3.1753 44 1 12.6693 -9.4050 3.2123 45 1 12.2836 -8.3736 6.7819 46 1 11.4530 -9.3907 5.5665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114711029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:31 Heat of formation + Delta-G solvation = -23.480059 kcal Electronic energy + Delta-G solvation = -27648.422091 eV Core-core repulsion = 23540.950185 eV Total energy + Delta-G solvation = -4107.471906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.18921 -40.25929 -39.10155 -38.08314 -35.37920 -34.94890 -33.92636 -32.72768 -31.63480 -29.30035 -28.34621 -27.97709 -26.70260 -24.62867 -23.30452 -21.97382 -21.21927 -21.17569 -20.52983 -20.35481 -19.31854 -18.28782 -18.04163 -17.18561 -16.50027 -16.16315 -15.88604 -15.70388 -15.27579 -15.17251 -14.91349 -14.76778 -14.56947 -13.77553 -13.60796 -13.51215 -13.30737 -13.18047 -12.93538 -12.64315 -12.41700 -12.38243 -12.21396 -12.09991 -11.82963 -11.47725 -11.45785 -11.17865 -11.00133 -10.93638 -10.83960 -10.58962 -10.33130 -10.25292 -10.17225 -9.96808 -9.55074 -9.08796 -8.64190 -8.17834 -8.12168 -6.30065 -3.81403 1.82946 2.41990 2.94252 3.03204 3.07391 3.15647 3.43380 3.48353 3.73652 3.78349 3.92399 3.97606 4.11131 4.19803 4.30274 4.39494 4.46072 4.53367 4.54451 4.63088 4.75403 4.81247 5.00444 5.02153 5.08563 5.09603 5.16459 5.21291 5.38365 5.39785 5.51280 5.54016 5.57330 5.62101 5.68420 5.86112 5.91547 5.95363 6.11343 6.14275 6.28419 6.92999 7.01511 7.04509 7.59241 7.75070 8.15290 8.61430 8.96455 9.43567 9.84782 10.83101 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030616 B = 0.001709 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.320882 B =16375.880239 C =16564.384379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.592 5.592 10 C 0.454 3.546 11 O -0.558 6.558 12 C 0.031 3.969 13 N -0.483 5.483 14 C 0.068 3.932 15 C -0.159 4.159 16 H 0.124 0.876 17 C -0.167 4.167 18 H 0.119 0.881 19 C 0.061 3.939 20 C 0.100 3.900 21 H 0.134 0.866 22 N -0.693 5.693 23 C 0.549 3.451 24 O -0.531 6.531 25 C -0.151 4.151 26 H 0.127 0.873 27 C -0.168 4.168 28 H 0.130 0.870 29 C 0.073 3.927 30 O -0.370 6.370 31 C 0.071 3.929 32 C -0.156 4.156 33 H 0.136 0.864 34 H 0.273 0.727 35 H 0.370 0.630 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.045 0.955 39 H 0.103 0.897 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.404 0.596 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.103 0.897 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.475 -14.876 5.644 31.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.232 5.232 10 C 0.240 3.760 11 O -0.439 6.439 12 C -0.101 4.101 13 N -0.207 5.207 14 C -0.060 4.060 15 C -0.180 4.180 16 H 0.142 0.858 17 C -0.187 4.187 18 H 0.137 0.863 19 C -0.067 4.067 20 C -0.006 4.006 21 H 0.151 0.849 22 N -0.342 5.342 23 C 0.335 3.665 24 O -0.407 6.407 25 C -0.172 4.172 26 H 0.145 0.855 27 C -0.187 4.187 28 H 0.148 0.852 29 C -0.003 4.003 30 O -0.289 6.289 31 C -0.005 4.005 32 C -0.175 4.175 33 H 0.154 0.846 34 H 0.084 0.916 35 H 0.202 0.798 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.122 0.878 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.239 0.761 43 H 0.121 0.879 44 H 0.085 0.915 45 H 0.121 0.879 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 26.743 -15.074 5.815 31.244 hybrid contribution 0.655 1.593 0.072 1.724 sum 27.397 -13.481 5.888 31.097 Atomic orbital electron populations 1.69616 1.05626 1.27461 1.49504 1.25028 0.95483 0.97939 0.97706 0.86678 0.79767 0.84099 0.78875 1.19619 1.20202 1.19550 1.19419 0.79210 0.96617 1.48011 0.86282 1.42202 1.07523 1.06103 1.67384 1.19574 0.87901 0.84581 0.83992 1.90553 1.69310 1.30841 1.53216 1.22099 0.96078 0.89955 1.01955 1.65254 1.11614 1.15867 1.27917 1.23258 1.00183 0.93138 0.89389 1.24697 0.89454 1.00594 1.03230 0.85844 1.23799 1.03829 0.99855 0.91241 0.86345 1.22658 0.88743 0.93881 1.01410 1.21882 0.91471 0.91698 0.95576 0.84865 1.45185 1.44454 1.17681 1.26857 1.19440 0.79289 0.87681 0.80075 1.90739 1.65622 1.30883 1.53410 1.22758 0.92244 0.99135 1.03037 0.85548 1.24638 0.90074 1.01604 1.02355 0.85186 1.22968 0.99795 0.93978 0.83602 1.89221 1.31745 1.88918 1.19026 1.22990 0.85257 0.94036 0.98231 1.24239 1.01361 1.01868 0.90032 0.84632 0.91638 0.79754 0.92879 0.88972 0.93664 0.87839 0.93603 0.89251 0.76120 0.87899 0.91533 0.87854 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 13.96 55.50 0.77 -25.06 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.44 27.74 -169.99 -4.71 14.73 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 7 C -0.30 -8.62 10.16 -14.94 -0.15 -8.77 16 8 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 9 N -0.59 -14.14 5.09 -10.97 -0.06 -14.19 16 10 C 0.45 10.32 7.63 -10.99 -0.08 10.23 16 11 O -0.56 -14.91 14.80 5.55 0.08 -14.83 16 12 C 0.03 0.52 5.32 -4.97 -0.03 0.49 16 13 N -0.48 -7.58 4.98 -229.23 -1.14 -8.72 16 14 C 0.07 1.03 5.78 -0.39 0.00 1.02 16 15 C -0.16 -1.82 7.33 -87.45 -0.64 -2.46 16 16 H 0.12 1.29 8.14 -51.93 -0.42 0.86 16 17 C -0.17 -1.67 6.97 -89.24 -0.62 -2.29 16 18 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 19 C 0.06 0.71 6.26 -2.19 -0.01 0.70 16 20 C 0.10 1.02 5.92 -67.93 -0.40 0.62 16 21 H 0.13 1.62 7.40 -51.93 -0.38 1.24 16 22 N -0.69 -5.55 5.56 -53.80 -0.30 -5.85 16 23 C 0.55 5.24 7.65 -10.99 -0.08 5.15 16 24 O -0.53 -7.31 15.91 5.55 0.09 -7.22 16 25 C -0.15 -0.96 5.82 -90.39 -0.53 -1.49 16 26 H 0.13 0.51 8.14 -51.93 -0.42 0.09 16 27 C -0.17 -1.01 7.07 -87.65 -0.62 -1.63 16 28 H 0.13 0.81 8.14 -51.93 -0.42 0.38 16 29 C 0.07 0.38 7.45 37.93 0.28 0.66 16 30 O -0.37 -2.82 11.65 -35.23 -0.41 -3.23 16 31 C 0.07 0.42 7.43 37.93 0.28 0.70 16 32 C -0.16 -1.08 6.56 -89.03 -0.58 -1.67 16 33 H 0.14 1.12 7.81 -51.93 -0.41 0.71 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.37 7.75 5.76 -40.82 -0.24 7.51 16 36 H 0.05 0.79 7.77 -51.93 -0.40 0.39 16 37 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 38 H 0.05 0.67 7.75 -51.93 -0.40 0.26 16 39 H 0.10 1.86 7.24 -51.93 -0.38 1.48 16 40 H 0.05 0.50 8.00 -51.93 -0.42 0.08 16 41 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.40 2.05 8.83 -40.82 -0.36 1.69 16 43 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 LS Contribution 380.88 15.07 5.74 5.74 Total: -1.00 -35.68 380.88 -9.99 -45.67 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.76 Total: 10.68 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -3.29 Total: 2.30 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.72 Total: -53.83 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.24 Total: -25.28 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.71 Total: 14.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.68 -9.99 -45.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114711029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.191 kcal (2) G-P(sol) polarization free energy of solvation -35.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds