Wall clock time and date at job start Tue Mar 31 2020 19:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86805 * 119.99517 * 2 1 4 4 H 1.48504 * 109.47148 * 269.99853 * 3 2 1 5 5 H 1.48495 * 109.47213 * 30.00056 * 3 2 1 6 6 H 1.48501 * 109.47068 * 149.99807 * 3 2 1 7 7 C 1.38948 * 120.00800 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99500 * 359.97438 * 7 2 1 9 9 N 1.37088 * 120.00544 * 179.97438 * 7 2 1 10 10 C 1.34776 * 120.00428 * 180.02562 * 9 7 2 11 11 O 1.21291 * 119.99686 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00194 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.46960 * 180.02562 * 12 10 9 14 14 C 1.48567 * 110.99706 * 285.41715 * 13 12 10 15 15 C 1.57594 * 104.64902 * 200.33623 * 14 13 12 16 16 H 1.09004 * 120.24177 * 244.57448 * 15 14 13 17 17 C 1.54261 * 103.52799 * 24.69793 * 15 14 13 18 18 H 1.09001 * 121.78521 * 220.66607 * 17 15 14 19 19 C 1.48555 * 110.99821 * 170.00411 * 13 12 10 20 20 C 1.52996 * 59.72847 * 112.62802 * 17 15 14 21 21 H 1.08997 * 117.44616 * 252.39410 * 20 17 15 22 22 N 1.46510 * 117.44238 * 107.64410 * 20 17 15 23 23 C 1.34776 * 119.99970 * 154.99984 * 22 20 17 24 24 O 1.21290 * 119.99703 * 359.97438 * 23 22 20 25 25 C 1.50696 * 120.00138 * 180.02562 * 23 22 20 26 26 H 1.09004 * 115.48165 * 325.32689 * 25 23 22 27 27 C 1.55592 * 117.96055 * 111.13846 * 25 23 22 28 28 H 1.09000 * 120.88093 * 355.57933 * 27 25 23 29 29 C 1.54475 * 118.08307 * 197.34528 * 27 25 23 30 30 O 1.44433 * 104.80530 * 273.79393 * 29 27 25 31 31 C 1.44429 * 105.26998 * 40.51499 * 30 29 27 32 32 C 1.52999 * 117.43298 * 180.02562 * 25 23 22 33 33 H 1.09002 * 119.80945 * 4.63232 * 32 25 23 34 34 H 0.96994 * 120.00310 * 359.97438 * 1 2 3 35 35 H 0.97009 * 119.99832 * 0.02562 * 9 7 2 36 36 H 1.08998 * 109.47185 * 60.00291 * 12 10 9 37 37 H 1.09001 * 109.47238 * 299.99981 * 12 10 9 38 38 H 1.08999 * 110.41081 * 319.73769 * 14 13 12 39 39 H 1.08996 * 110.40953 * 82.18240 * 14 13 12 40 40 H 1.09002 * 110.41680 * 40.25628 * 19 13 12 41 41 H 1.09003 * 110.51031 * 277.86463 * 19 13 12 42 42 H 0.96996 * 120.00136 * 334.99846 * 22 20 17 43 43 H 1.09005 * 110.37201 * 154.96675 * 29 27 25 44 44 H 1.08996 * 110.37619 * 32.62766 * 29 27 25 45 45 H 1.09003 * 110.36685 * 200.65441 * 31 30 29 46 46 H 1.08997 * 110.46804 * 78.36668 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0466 -1.4001 5 1 1.4454 2.6527 0.7000 6 1 3.5455 1.4404 0.7001 7 6 2.0090 -1.2032 0.0005 8 1 1.4691 -2.1386 0.0014 9 7 3.3799 -1.2032 0.0000 10 6 4.0539 -2.3703 0.0000 11 8 3.4475 -3.4207 0.0000 12 6 5.5609 -2.3702 0.0000 13 7 6.0507 -3.7551 -0.0006 14 6 5.8805 -4.3806 1.3362 15 6 6.8898 -5.5909 1.3414 16 1 6.5196 -6.6142 1.4045 17 6 7.9571 -5.1751 0.3081 18 1 8.3813 -5.8889 -0.3980 19 6 7.5158 -3.8016 -0.2414 20 6 8.3180 -5.2765 1.7914 21 1 8.4796 -4.3450 2.3339 22 7 9.1584 -6.4025 2.2064 23 6 9.9148 -6.3052 3.3176 24 8 9.9000 -5.2853 3.9739 25 6 10.7797 -7.4632 3.7442 26 1 10.3699 -8.4533 3.5442 27 6 12.3234 -7.2973 3.6419 28 1 12.7619 -6.3994 3.2065 29 6 13.1957 -8.5716 3.6776 30 8 13.4098 -8.8332 5.0818 31 6 12.1420 -8.5598 5.7173 32 6 11.6138 -7.2894 5.0150 33 1 11.5087 -6.3839 5.6125 34 1 -0.4850 0.8400 0.0004 35 1 3.8649 -0.3630 -0.0004 36 1 5.9242 -1.8564 0.8900 37 1 5.9242 -1.8563 -0.8900 38 1 6.1244 -3.6672 2.1234 39 1 4.8614 -4.7478 1.4571 40 1 8.0156 -2.9976 0.2990 41 1 7.7300 -3.7322 -1.3079 42 1 9.1705 -7.2180 1.6814 43 1 14.1468 -8.3946 3.1753 44 1 12.6693 -9.4050 3.2123 45 1 12.2836 -8.3736 6.7819 46 1 11.4530 -9.3907 5.5665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114711029.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:31 Heat of formation + Delta-G solvation = -52.987451 kcal Electronic energy + Delta-G solvation = -27649.701627 eV Core-core repulsion = 23540.950185 eV Total energy + Delta-G solvation = -4108.751442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.81282 -41.16389 -40.19188 -39.53904 -36.46426 -35.84607 -35.51642 -33.84669 -33.59129 -29.69550 -29.44641 -29.23212 -27.45429 -26.30066 -24.15579 -22.91244 -22.06604 -21.68375 -21.42014 -21.21387 -21.10080 -20.16832 -18.71119 -18.04055 -17.65566 -17.05821 -16.85004 -16.65712 -16.34053 -16.24436 -16.10762 -15.76053 -15.53176 -15.16456 -14.86597 -14.86056 -14.41483 -14.08512 -14.07531 -13.88438 -13.59684 -13.39095 -13.16421 -13.00230 -12.88974 -12.57747 -12.51084 -12.45144 -12.40342 -12.00607 -11.94474 -11.50498 -11.48713 -11.35674 -11.15420 -11.01088 -10.66889 -10.42195 -10.24702 -9.88471 -9.40251 -8.41697 -6.02442 1.14391 1.29373 1.34724 1.43441 1.71864 1.95431 2.22236 2.37313 2.57736 2.73080 3.02838 3.13043 3.18050 3.31841 3.46542 3.59034 3.60719 3.69085 3.77249 3.87479 3.99793 4.03504 4.09409 4.13984 4.24824 4.32164 4.39259 4.42448 4.48939 4.55653 4.65992 4.75483 4.78535 4.80645 4.90322 4.96919 5.02539 5.08328 5.10390 5.37480 5.51901 5.71851 5.78622 5.87026 5.99253 6.38530 6.59443 6.88120 7.07615 7.39432 7.96972 8.75986 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030616 B = 0.001709 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.320882 B =16375.880239 C =16564.384379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.965 3.035 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.233 1.233 7 C -0.328 4.328 8 H 0.055 0.945 9 N -0.593 5.593 10 C 0.452 3.548 11 O -0.606 6.606 12 C 0.043 3.957 13 N -0.508 5.508 14 C 0.065 3.935 15 C -0.169 4.169 16 H 0.133 0.867 17 C -0.146 4.146 18 H 0.147 0.853 19 C 0.059 3.941 20 C 0.109 3.891 21 H 0.114 0.886 22 N -0.678 5.678 23 C 0.546 3.454 24 O -0.580 6.580 25 C -0.141 4.141 26 H 0.158 0.842 27 C -0.159 4.159 28 H 0.125 0.875 29 C 0.073 3.927 30 O -0.394 6.394 31 C 0.074 3.926 32 C -0.172 4.172 33 H 0.114 0.886 34 H 0.279 0.721 35 H 0.389 0.611 36 H 0.078 0.922 37 H 0.126 0.874 38 H 0.043 0.957 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.422 0.578 43 H 0.115 0.885 44 H 0.087 0.913 45 H 0.107 0.893 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.345 -14.679 4.731 34.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.214 4.214 3 Si 0.785 3.215 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.157 1.157 7 C -0.457 4.457 8 H 0.073 0.927 9 N -0.235 5.235 10 C 0.239 3.761 11 O -0.490 6.490 12 C -0.089 4.089 13 N -0.232 5.232 14 C -0.063 4.063 15 C -0.189 4.189 16 H 0.151 0.849 17 C -0.166 4.166 18 H 0.165 0.835 19 C -0.068 4.068 20 C 0.002 3.998 21 H 0.132 0.868 22 N -0.327 5.327 23 C 0.334 3.666 24 O -0.459 6.459 25 C -0.162 4.162 26 H 0.175 0.825 27 C -0.178 4.178 28 H 0.143 0.857 29 C -0.003 4.003 30 O -0.313 6.313 31 C -0.002 4.002 32 C -0.191 4.191 33 H 0.132 0.868 34 H 0.088 0.912 35 H 0.224 0.776 36 H 0.096 0.904 37 H 0.144 0.856 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.126 0.874 42 H 0.260 0.740 43 H 0.133 0.867 44 H 0.105 0.895 45 H 0.125 0.875 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 30.647 -14.920 4.876 34.433 hybrid contribution -0.618 1.419 0.364 1.590 sum 30.029 -13.502 5.240 33.339 Atomic orbital electron populations 1.69800 1.08110 1.29217 1.50397 1.26102 0.96466 1.02668 0.96114 0.85370 0.79401 0.76775 0.79998 1.17972 1.20051 1.15672 1.18993 0.81473 0.94912 1.50319 0.92708 1.42031 1.05820 1.07543 1.68108 1.20853 0.90723 0.83343 0.81146 1.90535 1.71265 1.32677 1.54538 1.22013 0.90699 0.91526 1.04651 1.65180 1.14673 1.15265 1.28091 1.23111 0.99055 0.94676 0.89497 1.24538 0.89262 0.99592 1.05516 0.84921 1.23889 1.02013 0.99434 0.91225 0.83547 1.22777 0.85960 0.95207 1.02813 1.21607 0.90643 0.91712 0.95841 0.86817 1.45053 1.43321 1.17793 1.26573 1.19996 0.79192 0.87806 0.79651 1.90724 1.67253 1.32985 1.54934 1.22751 0.92020 0.99000 1.02381 0.82464 1.24681 0.89819 1.02101 1.01200 0.85668 1.23141 1.00462 0.93970 0.82735 1.89199 1.32705 1.89031 1.20381 1.23057 0.84993 0.93887 0.98306 1.24218 1.02514 1.01852 0.90553 0.86788 0.91160 0.77552 0.90394 0.85626 0.93893 0.92090 0.92318 0.87447 0.73987 0.86723 0.89500 0.87471 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.96 21.66 0.30 -56.56 16 2 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 3 Si 0.96 39.22 27.74 68.60 1.90 41.13 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 6 H -0.23 -8.04 6.52 99.48 0.65 -7.39 16 7 C -0.33 -19.46 10.16 84.04 0.85 -18.60 16 8 H 0.05 3.87 7.39 -2.91 -0.02 3.85 16 9 N -0.59 -28.40 5.09 -306.99 -1.56 -29.97 16 10 C 0.45 20.79 7.63 87.66 0.67 21.45 16 11 O -0.61 -34.15 14.80 -3.07 -0.05 -34.20 16 12 C 0.04 1.33 5.32 85.56 0.45 1.79 16 13 N -0.51 -15.26 4.98 -879.14 -4.38 -19.64 16 14 C 0.06 1.97 5.78 87.61 0.51 2.48 16 15 C -0.17 -3.66 7.33 -8.74 -0.06 -3.72 16 16 H 0.13 2.60 8.14 -2.38 -0.02 2.58 16 17 C -0.15 -2.46 6.97 -9.90 -0.07 -2.52 16 18 H 0.15 1.71 8.14 -2.39 -0.02 1.69 16 19 C 0.06 1.19 6.26 86.45 0.54 1.73 16 20 C 0.11 2.02 5.92 44.99 0.27 2.28 16 21 H 0.11 2.66 7.40 -2.39 -0.02 2.65 16 22 N -0.68 -9.20 5.56 -442.52 -2.46 -11.67 16 23 C 0.55 9.62 7.65 87.66 0.67 10.29 16 24 O -0.58 -15.95 15.91 -3.06 -0.05 -16.00 16 25 C -0.14 -1.49 5.82 -10.65 -0.06 -1.55 16 26 H 0.16 0.67 8.14 -2.38 -0.02 0.65 16 27 C -0.16 -1.61 7.07 -8.87 -0.06 -1.67 16 28 H 0.13 1.38 8.14 -2.39 -0.02 1.37 16 29 C 0.07 0.56 7.45 72.48 0.54 1.10 16 30 O -0.39 -5.27 11.65 -148.98 -1.74 -7.01 16 31 C 0.07 0.74 7.43 72.48 0.54 1.28 16 32 C -0.17 -2.23 6.56 -9.77 -0.06 -2.29 16 33 H 0.11 1.97 7.81 -2.39 -0.02 1.95 16 34 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 35 H 0.39 15.42 5.76 -92.70 -0.53 14.88 16 36 H 0.08 2.09 7.77 -2.39 -0.02 2.07 16 37 H 0.13 3.13 8.08 -2.39 -0.02 3.11 16 38 H 0.04 1.28 7.75 -2.39 -0.02 1.27 16 39 H 0.06 2.35 7.24 -2.39 -0.02 2.33 16 40 H 0.06 1.06 8.00 -2.39 -0.02 1.04 16 41 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.42 2.76 8.83 -92.71 -0.82 1.94 16 43 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 44 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 45 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -85.70 380.88 -3.23 -88.93 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.39 Total: 33.30 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: 5.19 Total: 11.67 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -8.10 Total: -117.83 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -1.83 Total: -57.20 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 1.90 Total: 41.13 kcal Total: -85.70 -3.23 -88.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114711029.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.943 kcal (2) G-P(sol) polarization free energy of solvation -85.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds