Wall clock time and date at job start Tue Mar 31 2020 18:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86803 * 119.99906 * 2 1 4 4 H 1.48496 * 109.47481 * 240.00539 * 3 2 1 5 5 H 1.48501 * 109.47012 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46961 * 119.99911 * 3 2 1 7 7 C 1.38956 * 120.00313 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99664 * 179.97438 * 7 2 1 9 9 N 1.37090 * 119.99983 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00038 * 179.97438 * 9 7 2 11 11 O 1.21284 * 120.00065 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99678 * 179.97438 * 10 9 7 13 13 N 1.46507 * 109.47103 * 180.02562 * 12 10 9 14 14 C 1.34771 * 120.00416 * 179.97438 * 13 12 10 15 15 O 1.21589 * 120.00001 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00269 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00185 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.47311 * 179.97438 * 17 16 14 19 19 C 1.52995 * 109.47162 * 179.97438 * 18 17 16 20 20 O 1.42903 * 109.46972 * 180.02562 * 19 18 17 21 21 C 1.42893 * 113.99793 * 180.02562 * 20 19 18 22 22 C 1.50707 * 109.47070 * 179.97438 * 21 20 19 23 23 C 1.38238 * 119.99792 * 89.99993 * 22 21 20 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.97930 * 22 21 20 28 28 H 0.96995 * 120.00585 * 359.97438 * 1 2 3 29 29 H 0.97011 * 119.99987 * 359.97438 * 9 7 2 30 30 H 1.08993 * 109.47785 * 60.00030 * 12 10 9 31 31 H 1.09005 * 109.47698 * 299.99469 * 12 10 9 32 32 H 0.97003 * 119.99160 * 359.97438 * 13 12 10 33 33 H 0.97003 * 119.99308 * 359.97438 * 16 14 13 34 34 H 1.09005 * 109.47101 * 60.00109 * 17 16 14 35 35 H 1.08993 * 109.47064 * 300.00304 * 17 16 14 36 36 H 1.09001 * 109.46447 * 60.00062 * 18 17 16 37 37 H 1.09005 * 109.47034 * 300.00372 * 18 17 16 38 38 H 1.09005 * 109.47112 * 60.00208 * 19 18 17 39 39 H 1.08993 * 109.47202 * 300.00311 * 19 18 17 40 40 H 1.09005 * 109.47744 * 60.00256 * 21 20 19 41 41 H 1.09000 * 109.47353 * 299.99456 * 21 20 19 42 42 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 43 43 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 44 44 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 45 45 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 46 46 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1017 1.6966 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9975 -3.5578 -0.0026 11 8 3.2103 -3.5577 -0.0022 12 6 1.2440 -4.8629 -0.0032 13 7 2.1960 -5.9764 -0.0037 14 6 1.7469 -7.2471 -0.0038 15 8 0.5515 -7.4693 -0.0029 16 7 2.6227 -8.2715 -0.0048 17 6 2.1345 -9.6527 -0.0054 18 6 3.3245 -10.6144 -0.0071 19 6 2.8146 -12.0568 -0.0071 20 8 3.9261 -12.9550 -0.0081 21 6 3.5577 -14.3356 -0.0088 22 6 4.8010 -15.1873 -0.0104 23 6 5.3722 -15.5788 1.1860 24 6 6.5123 -16.3604 1.1845 25 6 7.0809 -16.7511 -0.0134 26 6 6.5127 -16.3553 -1.2098 27 6 5.3699 -15.5774 -1.2083 28 1 -0.4851 0.8399 0.0004 29 1 0.3534 -2.3907 -0.0016 30 1 0.6170 -4.9201 -0.8929 31 1 0.6177 -4.9213 0.8870 32 1 3.1497 -5.7990 -0.0040 33 1 3.5764 -8.0941 -0.0058 34 1 1.5286 -9.8235 -0.8952 35 1 1.5293 -9.8245 0.8847 36 1 3.9307 -10.4437 0.8826 37 1 3.9294 -10.4423 -0.8975 38 1 2.2080 -12.2278 -0.8965 39 1 2.2100 -12.2285 0.8834 40 1 2.9671 -14.5538 -0.8987 41 1 2.9680 -14.5548 0.8814 42 1 4.9277 -15.2739 2.1219 43 1 6.9588 -16.6659 2.1192 44 1 7.9714 -17.3622 -0.0146 45 1 6.9594 -16.6568 -2.1457 46 1 4.9232 -15.2722 -2.1430 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117316118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:05 Heat of formation + Delta-G solvation = -96.156381 kcal Electronic energy + Delta-G solvation = -26058.767407 eV Core-core repulsion = 21948.144019 eV Total energy + Delta-G solvation = -4110.623388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.89119 -39.77596 -38.32308 -38.08423 -35.58916 -34.37770 -33.63450 -32.79934 -31.47775 -31.33792 -31.27185 -27.79349 -26.58320 -25.14933 -24.15771 -23.02385 -22.12150 -21.60620 -20.68076 -19.57254 -18.36276 -17.93077 -17.36640 -17.07413 -16.78485 -16.00727 -15.81155 -15.80889 -15.54136 -15.26904 -14.73373 -14.51487 -14.49547 -14.17216 -13.90114 -13.87768 -13.72379 -13.45995 -13.18213 -12.82261 -12.69089 -12.18675 -12.12732 -11.93774 -11.65760 -11.61738 -11.53181 -11.33898 -11.30554 -11.09245 -10.49826 -10.30576 -10.05133 -10.04172 -9.61384 -9.35261 -9.28585 -9.17394 -8.61129 -8.59466 -8.08631 -6.50028 -3.92115 0.81525 0.97034 2.70996 3.14537 3.14736 3.22474 3.26578 3.40569 3.63965 3.76783 4.10228 4.33374 4.35852 4.45470 4.56897 4.58679 4.67851 4.77045 4.79742 4.87654 4.91527 4.92984 5.09061 5.11010 5.17915 5.18800 5.22728 5.41765 5.52284 5.59633 5.79214 5.79881 5.94371 6.00378 6.02327 6.07096 6.09777 6.14279 6.47361 6.53802 6.75035 6.76801 7.09505 7.47040 7.93570 8.24042 8.46758 8.79713 9.05931 9.40951 9.88997 10.66816 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.032282 B = 0.001238 C = 0.001209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.153220 B =22619.768763 C =23161.225087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.306 4.306 8 H 0.105 0.895 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.724 5.724 14 C 0.705 3.295 15 O -0.599 6.599 16 N -0.749 5.749 17 C 0.144 3.856 18 C -0.131 4.131 19 C 0.066 3.934 20 O -0.382 6.382 21 C 0.103 3.897 22 C -0.091 4.091 23 C -0.099 4.099 24 C -0.124 4.124 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.099 4.099 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.407 0.593 33 H 0.398 0.602 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 -32.482 -0.029 33.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.436 4.436 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.382 5.382 14 C 0.404 3.596 15 O -0.478 6.478 16 N -0.406 5.406 17 C 0.019 3.981 18 C -0.169 4.169 19 C -0.011 4.011 20 O -0.301 6.301 21 C 0.027 3.973 22 C -0.091 4.091 23 C -0.117 4.117 24 C -0.142 4.142 25 C -0.133 4.133 26 C -0.142 4.142 27 C -0.117 4.117 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.244 0.756 33 H 0.232 0.768 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.684 -32.410 -0.028 33.309 hybrid contribution 0.422 0.940 -0.001 1.031 sum 8.106 -31.470 -0.029 32.497 Atomic orbital electron populations 1.69603 1.06003 1.28617 1.49278 1.25314 0.95648 0.99885 0.96777 0.85877 0.78781 0.80193 0.79140 1.19791 1.20856 1.19795 1.19684 0.93441 0.82042 1.48390 0.87744 1.41777 1.09484 1.04426 1.62675 1.19767 0.88297 0.85025 0.85508 1.90487 1.13765 1.86866 1.57356 1.20784 0.91214 0.84841 1.03142 1.44771 1.11267 1.03319 1.78794 1.15830 0.85161 0.80574 0.77999 1.90904 1.14067 1.84310 1.58483 1.44974 1.09185 1.05016 1.81439 1.20941 0.95369 0.79190 1.02552 1.21677 0.98506 0.92383 1.04315 1.22354 0.88777 0.89146 1.00851 1.87949 1.31990 1.14692 1.95484 1.21303 0.93770 0.81138 1.01114 1.19617 0.97320 0.98540 0.93627 1.21098 0.95754 0.97242 0.97608 1.21176 0.96194 0.98535 0.98284 1.21228 0.99785 0.99672 0.92635 1.21176 0.96164 0.98546 0.98299 1.21097 0.95739 0.97277 0.97590 0.91543 0.77005 0.90011 0.90013 0.75568 0.76821 0.91500 0.91487 0.90265 0.90258 0.92737 0.92741 0.92292 0.92287 0.85870 0.85847 0.85970 0.85845 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.92 13.05 55.50 0.72 -23.20 16 2 C 0.03 0.70 5.50 -17.47 -0.10 0.60 16 3 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.31 -8.34 9.68 -14.93 -0.14 -8.49 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.65 5.29 -10.97 -0.06 -13.71 16 10 C 0.43 9.87 7.85 -10.99 -0.09 9.79 16 11 O -0.60 -15.32 15.24 5.55 0.08 -15.24 16 12 C 0.13 2.41 6.15 -5.19 -0.03 2.38 16 13 N -0.72 -12.27 5.53 -66.41 -0.37 -12.63 16 14 C 0.70 11.51 8.57 -86.92 -0.74 10.76 16 15 O -0.60 -11.77 16.34 5.29 0.09 -11.68 16 16 N -0.75 -8.89 5.56 -65.23 -0.36 -9.26 16 17 C 0.14 1.42 5.67 -4.04 -0.02 1.40 16 18 C -0.13 -1.00 5.70 -26.73 -0.15 -1.15 16 19 C 0.07 0.47 5.94 37.16 0.22 0.69 16 20 O -0.38 -3.38 10.33 -35.23 -0.36 -3.74 16 21 C 0.10 0.71 6.06 36.01 0.22 0.93 16 22 C -0.09 -0.70 5.51 -104.62 -0.58 -1.27 16 23 C -0.10 -0.71 9.70 -39.58 -0.38 -1.09 16 24 C -0.12 -0.80 10.05 -39.58 -0.40 -1.19 16 25 C -0.12 -0.71 10.05 -39.58 -0.40 -1.11 16 26 C -0.12 -0.80 10.05 -39.58 -0.40 -1.19 16 27 C -0.10 -0.71 9.70 -39.58 -0.38 -1.09 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.40 9.48 7.90 -40.82 -0.32 9.16 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.41 6.67 7.45 -40.82 -0.30 6.37 16 33 H 0.40 3.80 8.49 -40.82 -0.35 3.46 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 41 H 0.06 0.33 8.09 -51.93 -0.42 -0.09 16 42 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 43 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.12 0.50 8.06 -52.49 -0.42 0.08 16 45 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 46 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 LS Contribution 399.29 15.07 6.02 6.02 Total: -1.00 -33.53 399.29 -9.46 -42.99 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -6.82 Total: 14.95 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -3.38 Total: 9.96 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.06 Total: -58.80 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -0.19 Total: -30.66 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.53 -9.46 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117316118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.163 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds