Wall clock time and date at job start Tue Mar 31 2020 18:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99875 * 2 1 4 4 H 1.48495 * 109.46754 * 270.00039 * 3 2 1 5 5 H 1.48496 * 109.46848 * 29.99698 * 3 2 1 6 6 H 1.48493 * 109.47211 * 150.00250 * 3 2 1 7 7 C 1.37884 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47197 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47067 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47341 * 305.00231 * 11 10 9 13 13 N 1.46905 * 109.47270 * 65.00352 * 11 10 9 14 14 C 1.50704 * 109.47244 * 185.00168 * 11 10 9 15 15 O 1.21288 * 119.99922 * 260.00176 * 14 11 10 16 16 N 1.34776 * 119.99868 * 80.00072 * 14 11 10 17 17 C 1.40112 * 120.00074 * 184.62982 * 16 14 11 18 18 C 1.38842 * 120.02116 * 144.91139 * 17 16 14 19 19 C 1.38079 * 119.99143 * 180.25671 * 18 17 16 20 20 C 1.38726 * 120.01027 * 359.43993 * 19 18 17 21 21 O 1.35971 * 119.98863 * 180.25673 * 20 19 18 22 22 C 1.42905 * 116.99525 * 0.30283 * 21 20 19 23 23 C 1.53003 * 109.47099 * 179.97438 * 22 21 20 24 24 C 1.50694 * 109.47162 * 179.97438 * 23 22 21 25 25 N 1.34779 * 119.99841 * 179.97438 * 24 23 22 26 26 O 1.21281 * 120.00068 * 0.02562 * 24 23 22 27 27 C 1.38724 * 120.03049 * 0.56132 * 20 19 18 28 28 C 1.38084 * 120.01269 * 359.72040 * 27 20 19 29 29 H 0.96994 * 120.00358 * 0.02562 * 1 2 3 30 30 H 1.09009 * 109.46892 * 60.00330 * 9 7 2 31 31 H 1.09004 * 109.47431 * 300.00302 * 9 7 2 32 32 H 1.08996 * 109.46928 * 60.00176 * 10 9 7 33 33 H 1.08998 * 109.47427 * 300.00102 * 10 9 7 34 34 H 1.00895 * 110.99883 * 59.99839 * 13 11 10 35 35 H 1.00901 * 110.99769 * 183.95328 * 13 11 10 36 36 H 0.96995 * 119.99953 * 4.62072 * 16 14 11 37 37 H 1.08004 * 119.99997 * 359.97405 * 18 17 16 38 38 H 1.07994 * 119.99906 * 179.70042 * 19 18 17 39 39 H 1.09004 * 109.47385 * 299.99662 * 22 21 20 40 40 H 1.09003 * 109.47080 * 59.99785 * 22 21 20 41 41 H 1.08994 * 109.47119 * 300.00225 * 23 22 21 42 42 H 1.09005 * 109.46587 * 59.99901 * 23 22 21 43 43 H 0.96998 * 120.00265 * 0.02562 * 25 24 23 44 44 H 0.97000 * 119.99583 * 180.02562 * 25 24 23 45 45 H 1.07996 * 119.99195 * 179.70340 * 27 20 19 46 46 H 1.08000 * 120.00937 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 6 1.4805 -4.9870 0.0020 12 1 0.7887 -5.0069 0.8441 13 7 0.7283 -5.1187 -1.2530 14 6 2.4552 -6.1298 0.1256 15 8 2.7867 -6.7535 -0.8604 16 7 2.9586 -6.4586 1.3318 17 6 3.9371 -7.4561 1.4343 18 6 4.9440 -7.3465 2.3840 19 6 5.9111 -8.3273 2.4809 20 6 5.8702 -9.4278 1.6374 21 8 6.8198 -10.3959 1.7367 22 6 7.8255 -10.2179 2.7362 23 6 8.7975 -11.3989 2.6976 24 6 9.8585 -11.2109 3.7511 25 7 10.8286 -12.1342 3.9029 26 8 9.8389 -10.2293 4.4631 27 6 4.8645 -9.5381 0.6883 28 6 3.9001 -8.5551 0.5864 29 1 -0.4850 0.8400 -0.0004 30 1 0.6242 -2.5575 -0.8881 31 1 0.6248 -2.5563 0.8920 32 1 2.8727 -3.6038 0.8909 33 1 2.8715 -3.6047 -0.8890 34 1 1.3478 -5.1031 -2.0492 35 1 0.1639 -5.9552 -1.2502 36 1 2.6435 -6.0046 2.1290 37 1 4.9734 -6.4919 3.0437 38 1 6.6972 -8.2397 3.2163 39 1 8.3693 -9.2930 2.5438 40 1 7.3563 -10.1659 3.7187 41 1 8.2536 -12.3236 2.8902 42 1 9.2668 -11.4513 1.7151 43 1 10.8441 -12.9195 3.3337 44 1 11.5113 -12.0133 4.5813 45 1 4.8360 -10.3928 0.0287 46 1 3.1174 -8.6408 -0.1528 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118123125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:59 Heat of formation + Delta-G solvation = -129.536037 kcal Electronic energy + Delta-G solvation = -27217.687915 eV Core-core repulsion = 23105.617077 eV Total energy + Delta-G solvation = -4112.070838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.80653 -40.97236 -40.33560 -38.57948 -36.79701 -35.54101 -34.81631 -34.72237 -32.86349 -31.99531 -31.91859 -29.93862 -27.99140 -26.07388 -25.42972 -23.75899 -23.18053 -22.09812 -21.44328 -21.05330 -19.45827 -18.90303 -18.44243 -18.22835 -17.99281 -17.53495 -17.41662 -16.97008 -16.64560 -16.51798 -16.10364 -15.85917 -15.59731 -15.29208 -15.06759 -14.70260 -14.58262 -14.27961 -14.24935 -14.05954 -13.86855 -13.70087 -13.42323 -13.13873 -12.82592 -12.80436 -12.50776 -12.26754 -12.05351 -11.87024 -11.72299 -11.58769 -11.24395 -11.18808 -11.02384 -10.88169 -10.68243 -10.48229 -10.04844 -9.66276 -8.77517 -8.13375 -6.23262 0.24802 0.29810 1.41701 1.42942 1.44974 1.53737 1.56875 1.86769 2.06463 2.44911 2.74054 2.87120 3.19841 3.52033 3.62385 3.74723 3.84587 3.90581 3.94048 4.09338 4.16576 4.20832 4.30077 4.35979 4.43608 4.56546 4.71321 4.72268 4.78105 4.91602 4.93499 4.98539 5.24993 5.26966 5.31151 5.41060 5.58225 5.79173 5.85737 5.86140 5.99664 6.08452 6.31303 6.34120 6.37755 6.42475 6.52944 6.95483 7.03738 7.29948 7.44771 8.97665 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016181 B = 0.001799 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.033876 B =15558.097412 C =16968.733116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.957 3.043 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.083 4.083 11 C 0.090 3.910 12 H 0.117 0.883 13 N -0.817 5.817 14 C 0.489 3.511 15 O -0.560 6.560 16 N -0.658 5.658 17 C 0.094 3.906 18 C -0.103 4.103 19 C -0.189 4.189 20 C 0.108 3.892 21 O -0.319 6.319 22 C 0.068 3.932 23 C -0.134 4.134 24 C 0.521 3.479 25 N -0.834 5.834 26 O -0.596 6.596 27 C -0.139 4.139 28 C -0.096 4.096 29 H 0.262 0.738 30 H 0.007 0.993 31 H -0.003 1.003 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.346 0.654 35 H 0.348 0.652 36 H 0.425 0.575 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.421 0.579 44 H 0.409 0.591 45 H 0.145 0.855 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.948 -29.568 8.002 35.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.121 4.121 11 C -0.026 4.026 12 H 0.134 0.866 13 N -0.346 5.346 14 C 0.276 3.724 15 O -0.438 6.438 16 N -0.305 5.305 17 C 0.000 4.000 18 C -0.123 4.123 19 C -0.208 4.208 20 C 0.063 3.937 21 O -0.233 6.233 22 C -0.008 4.008 23 C -0.173 4.173 24 C 0.306 3.694 25 N -0.398 5.398 26 O -0.477 6.477 27 C -0.158 4.158 28 C -0.116 4.116 29 H 0.071 0.929 30 H 0.025 0.975 31 H 0.015 0.985 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.264 0.736 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.253 0.747 44 H 0.240 0.760 45 H 0.163 0.837 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 17.503 -28.681 7.729 34.477 hybrid contribution 0.888 0.281 0.288 0.975 sum 18.391 -28.400 8.017 34.771 Atomic orbital electron populations 1.70094 1.07551 1.27476 1.51720 1.25868 0.95681 1.02901 0.95006 0.85566 0.78770 0.79131 0.78272 1.20226 1.20719 1.18912 1.21740 0.93354 0.92814 1.50381 0.92711 1.18837 0.93878 0.91185 0.95964 1.21403 0.97771 0.92047 1.00889 1.21647 0.93490 0.91498 0.95952 0.86574 1.58972 1.27114 1.45404 1.03160 1.22660 0.81900 0.85291 0.82522 1.90632 1.60758 1.54261 1.38117 1.43586 1.39212 1.37307 1.10361 1.17943 0.92289 0.90024 0.99775 1.20977 0.92244 0.99904 0.99222 1.21280 1.01902 0.95097 1.02520 1.18999 0.90083 0.88866 0.95768 1.85953 1.37266 1.44092 1.56001 1.22509 0.88220 0.99387 0.90660 1.21441 0.95128 1.00394 1.00385 1.20594 0.82904 0.82105 0.83755 1.43686 1.29719 1.25455 1.40928 1.90785 1.76697 1.31776 1.48480 1.20436 0.94421 1.01067 0.99851 1.21089 0.99530 0.91771 0.99216 0.92944 0.97461 0.98469 0.91364 0.93947 0.84007 0.83801 0.73640 0.83302 0.83545 0.91974 0.91516 0.85190 0.85481 0.74722 0.75967 0.83713 0.85082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.96 44.55 29.54 68.60 2.03 46.57 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -30.87 9.11 25.60 0.23 -30.63 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 9 C 0.04 1.98 4.86 29.84 0.15 2.12 16 10 C -0.08 -3.27 4.78 30.59 0.15 -3.12 16 11 C 0.09 2.86 3.15 44.17 0.14 3.00 16 12 H 0.12 3.33 8.14 -2.38 -0.02 3.31 16 13 N -0.82 -26.64 8.44 -171.79 -1.45 -28.09 16 14 C 0.49 14.64 6.91 87.66 0.61 15.24 16 15 O -0.56 -19.51 13.69 -3.06 -0.04 -19.55 16 16 N -0.66 -16.14 5.34 -303.39 -1.62 -17.77 16 17 C 0.09 2.36 6.30 38.11 0.24 2.60 16 18 C -0.10 -2.23 9.96 22.38 0.22 -2.01 16 19 C -0.19 -3.91 9.03 22.35 0.20 -3.71 16 20 C 0.11 2.36 6.69 22.50 0.15 2.51 16 21 O -0.32 -5.86 10.14 -93.22 -0.95 -6.81 16 22 C 0.07 0.98 4.03 71.98 0.29 1.27 16 23 C -0.13 -0.97 6.07 29.85 0.18 -0.79 16 24 C 0.52 5.71 8.10 87.65 0.71 6.42 16 25 N -0.83 -2.29 8.87 -173.53 -1.54 -3.83 16 26 O -0.60 -12.89 16.82 -3.03 -0.05 -12.94 16 27 C -0.14 -3.19 9.98 22.35 0.22 -2.96 16 28 C -0.10 -2.52 8.70 22.38 0.19 -2.33 16 29 H 0.26 15.00 8.31 -92.71 -0.77 14.22 16 30 H 0.01 0.40 7.75 -2.38 -0.02 0.38 16 31 H 0.00 -0.17 8.14 -2.38 -0.02 -0.19 16 32 H 0.07 2.48 8.14 -2.39 -0.02 2.47 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 34 H 0.35 11.60 8.58 -89.70 -0.77 10.83 16 35 H 0.35 9.58 9.06 -89.69 -0.81 8.77 16 36 H 0.43 8.09 8.82 -92.71 -0.82 7.27 16 37 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 38 H 0.15 2.56 6.29 -2.91 -0.02 2.55 16 39 H 0.06 1.02 7.60 -2.38 -0.02 1.00 16 40 H 0.07 1.03 7.63 -2.39 -0.02 1.01 16 41 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.13 0.45 8.14 -2.38 -0.02 0.43 16 43 H 0.42 -1.75 8.83 -92.71 -0.82 -2.57 16 44 H 0.41 0.89 8.93 -92.71 -0.83 0.06 16 45 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 46 H 0.13 3.77 6.22 -2.91 -0.02 3.76 16 Total: -1.00 -79.37 391.31 -2.17 -81.54 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -2.97 Total: 28.70 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 4.15 Total: -11.72 kcal Atomic # 7 Polarization: -101.47 SS G_CDS: -4.33 Total: -105.79 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -1.04 Total: -39.30 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -79.37 -2.17 -81.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118123125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.999 kcal (2) G-P(sol) polarization free energy of solvation -79.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds