Wall clock time and date at job start Tue Mar 31 2020 18:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86806 * 119.99595 * 2 1 4 4 H 1.48503 * 109.47049 * 270.00614 * 3 2 1 5 5 H 1.48500 * 109.47163 * 30.00177 * 3 2 1 6 6 H 1.48499 * 109.47078 * 150.00246 * 3 2 1 7 7 C 1.37874 * 120.00568 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 179.72357 * 7 2 1 9 9 C 1.50699 * 119.99738 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47339 * 179.72644 * 9 7 2 11 11 C 1.52999 * 109.47528 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.47014 * 54.99893 * 11 10 9 13 13 N 1.46903 * 109.46733 * 295.00192 * 11 10 9 14 14 C 1.50695 * 109.47397 * 175.00154 * 11 10 9 15 15 O 1.21291 * 120.00025 * 99.99490 * 14 11 10 16 16 N 1.34775 * 120.00142 * 280.00641 * 14 11 10 17 17 C 1.40108 * 120.00192 * 175.37480 * 16 14 11 18 18 C 1.38844 * 120.01544 * 214.80812 * 17 16 14 19 19 C 1.38096 * 119.98593 * 179.72219 * 18 17 16 20 20 C 1.38716 * 120.01281 * 0.55009 * 19 18 17 21 21 O 1.35972 * 119.98547 * 179.70352 * 20 19 18 22 22 C 1.42896 * 117.00069 * 0.02562 * 21 20 19 23 23 C 1.53000 * 109.47223 * 179.97438 * 22 21 20 24 24 C 1.50702 * 109.46988 * 180.02562 * 23 22 21 25 25 N 1.34772 * 119.99888 * 179.97438 * 24 23 22 26 26 O 1.21284 * 119.99826 * 359.97438 * 24 23 22 27 27 C 1.38722 * 120.03076 * 359.72495 * 20 19 18 28 28 C 1.38086 * 120.01531 * 0.02562 * 27 20 19 29 29 H 0.96991 * 120.00416 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47412 * 299.73336 * 9 7 2 31 31 H 1.08999 * 109.47157 * 59.73076 * 9 7 2 32 32 H 1.08997 * 109.47434 * 300.00679 * 10 9 7 33 33 H 1.08999 * 109.46643 * 60.00118 * 10 9 7 34 34 H 1.00909 * 110.99512 * 176.04147 * 13 11 10 35 35 H 1.00891 * 111.00277 * 299.99716 * 13 11 10 36 36 H 0.96999 * 119.99741 * 355.36622 * 16 14 11 37 37 H 1.07997 * 120.00688 * 359.97438 * 18 17 16 38 38 H 1.07994 * 119.99051 * 180.27852 * 19 18 17 39 39 H 1.09001 * 109.47207 * 300.00668 * 22 21 20 40 40 H 1.09004 * 109.46717 * 59.99650 * 22 21 20 41 41 H 1.08999 * 109.46930 * 300.00140 * 23 22 21 42 42 H 1.08994 * 109.47007 * 60.00237 * 23 22 21 43 43 H 0.97003 * 119.99880 * 0.02562 * 25 24 23 44 44 H 0.97004 * 119.99954 * 179.97438 * 25 24 23 45 45 H 1.08002 * 119.99341 * 179.97438 * 27 20 19 46 46 H 1.08003 * 120.00741 * 179.97438 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4404 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0050 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0081 11 6 1.4806 -4.9870 -0.0087 12 1 0.7849 -5.0046 -0.8477 13 7 0.7341 -5.1221 1.2493 14 6 2.4547 -6.1293 -0.1399 15 8 2.7907 -6.7557 0.8429 16 7 2.9527 -6.4548 -1.3492 17 6 3.9307 -7.4521 -1.4588 18 6 4.9299 -7.3426 -2.4166 19 6 5.8969 -8.3230 -2.5203 20 6 5.8635 -9.4227 -1.6754 21 8 6.8124 -10.3907 -1.7821 22 6 7.8136 -10.2099 -2.7854 23 6 8.7862 -11.3906 -2.7540 24 6 9.8425 -11.1996 -3.8118 25 7 10.8128 -12.1216 -3.9693 26 8 9.8193 -10.2162 -4.5212 27 6 4.8621 -9.5356 -0.7221 28 6 3.8975 -8.5534 -0.6139 29 1 -0.4850 0.8399 0.0004 30 1 0.6285 -2.5592 0.8920 31 1 0.6206 -2.5546 -0.8878 32 1 2.8682 -3.6019 -0.9006 33 1 2.8761 -3.6065 0.8792 34 1 0.1697 -5.9585 1.2468 35 1 1.3571 -5.1086 2.0427 36 1 2.6338 -5.9988 -2.1437 37 1 4.9533 -6.4889 -3.0776 38 1 6.6768 -8.2357 -3.2622 39 1 7.3400 -10.1548 -3.7656 40 1 8.3584 -9.2856 -2.5927 41 1 9.2598 -11.4452 -1.7738 42 1 8.2418 -12.3150 -2.9465 43 1 10.8311 -12.9083 -3.4021 44 1 11.4925 -11.9988 -4.6504 45 1 4.8363 -10.3922 -0.0649 46 1 3.1177 -8.6416 0.1281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118123128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:03 Heat of formation + Delta-G solvation = -99.988757 kcal Electronic energy + Delta-G solvation = -27216.211643 eV Core-core repulsion = 23105.422071 eV Total energy + Delta-G solvation = -4110.789572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.79518 -40.21856 -39.57988 -37.63297 -35.27309 -34.50457 -34.29378 -32.82183 -32.28832 -31.10703 -30.14139 -28.93136 -26.36686 -25.29525 -23.89145 -22.90187 -21.97359 -20.98934 -20.51079 -19.83975 -18.70072 -17.88529 -17.69265 -17.18002 -16.94188 -16.82224 -16.21256 -15.78292 -15.55252 -15.26072 -15.01133 -14.59896 -14.36518 -14.28420 -14.07937 -13.75818 -13.55876 -13.36230 -13.32635 -12.83695 -12.45014 -12.31467 -12.17988 -12.01327 -11.59097 -11.32280 -11.03658 -10.89929 -10.69359 -10.64007 -10.56799 -10.32129 -10.17145 -9.91112 -9.81430 -9.40036 -9.12449 -9.01027 -8.41089 -8.24337 -7.82451 -5.94527 -3.96761 1.19204 1.23045 2.01662 2.47585 2.63751 3.12233 3.33778 3.34589 3.41218 3.44818 3.67594 4.10290 4.40480 4.49637 4.52179 4.65822 4.73107 4.78765 4.90520 4.97007 5.09572 5.18534 5.20958 5.34936 5.40972 5.46181 5.48530 5.76736 5.79600 5.86906 6.14233 6.15251 6.24455 6.36065 6.41086 6.61844 6.66058 6.76340 7.05432 7.18617 7.29393 7.48477 7.62484 7.73600 7.75722 7.94365 8.11383 8.16845 8.47269 9.11089 9.66604 11.16312 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.001800 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.985439 B =15554.476187 C =16966.071376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.096 4.096 11 C 0.081 3.919 12 H 0.101 0.899 13 N -0.806 5.806 14 C 0.483 3.517 15 O -0.536 6.536 16 N -0.672 5.672 17 C 0.115 3.885 18 C -0.106 4.106 19 C -0.187 4.187 20 C 0.110 3.890 21 O -0.319 6.319 22 C 0.073 3.927 23 C -0.142 4.142 24 C 0.523 3.477 25 N -0.854 5.854 26 O -0.541 6.541 27 C -0.133 4.133 28 C -0.084 4.084 29 H 0.259 0.741 30 H 0.036 0.964 31 H 0.014 0.986 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.335 0.665 35 H 0.349 0.651 36 H 0.413 0.587 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.404 0.596 44 H 0.404 0.596 45 H 0.132 0.868 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.038 -28.389 -7.379 33.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.035 4.035 12 H 0.119 0.881 13 N -0.333 5.333 14 C 0.270 3.730 15 O -0.412 6.412 16 N -0.318 5.318 17 C 0.021 3.979 18 C -0.126 4.126 19 C -0.206 4.206 20 C 0.064 3.936 21 O -0.233 6.233 22 C -0.003 4.003 23 C -0.182 4.182 24 C 0.308 3.692 25 N -0.418 5.418 26 O -0.417 6.417 27 C -0.152 4.152 28 C -0.104 4.104 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.147 0.853 35 H 0.163 0.837 36 H 0.249 0.751 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.232 0.768 44 H 0.235 0.765 45 H 0.150 0.850 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.560 -27.432 -7.076 32.322 hybrid contribution 1.401 0.040 -0.523 1.496 sum 16.961 -27.392 -7.599 33.102 Atomic orbital electron populations 1.69968 1.05939 1.26442 1.50794 1.24983 0.94801 0.99045 0.95437 0.86652 0.79906 0.83766 0.77996 1.20781 1.21238 1.19976 1.21275 0.92926 0.91309 1.50670 0.92966 1.19021 0.93521 0.89773 0.98282 1.21681 0.98908 0.91996 1.00844 1.21875 0.93403 0.92926 0.95303 0.88107 1.58989 1.26863 1.44325 1.03171 1.23052 0.82178 0.85661 0.82073 1.90636 1.59844 1.53301 1.37438 1.43780 1.39759 1.37574 1.10648 1.17793 0.91584 0.89841 0.98724 1.20771 0.92990 0.99304 0.99579 1.21061 1.01774 0.95460 1.02336 1.18873 0.90033 0.88562 0.96096 1.85949 1.37571 1.44541 1.55285 1.22365 0.88427 0.98098 0.91372 1.21463 0.96012 1.00952 0.99806 1.20343 0.82253 0.82483 0.84154 1.43823 1.31131 1.25762 1.41089 1.90805 1.75108 1.29286 1.46550 1.20306 0.94598 1.00904 0.99374 1.21114 0.99192 0.90902 0.99158 0.93086 0.94612 0.96795 0.92730 0.92726 0.85333 0.83683 0.75080 0.85151 0.84994 0.91072 0.91052 0.87439 0.87464 0.76785 0.76466 0.85018 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.06 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 10 C -0.10 -1.90 4.78 -26.73 -0.13 -2.03 16 11 C 0.08 1.30 3.15 -68.87 -0.22 1.09 16 12 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 13 N -0.81 -13.07 8.44 -5.65 -0.05 -13.11 16 14 C 0.48 7.37 6.91 -10.99 -0.08 7.29 16 15 O -0.54 -9.37 13.69 5.55 0.08 -9.29 16 16 N -0.67 -8.59 5.34 -9.83 -0.05 -8.64 16 17 C 0.11 1.50 6.30 -83.62 -0.53 0.98 16 18 C -0.11 -1.22 9.96 -39.41 -0.39 -1.62 16 19 C -0.19 -2.07 9.03 -39.46 -0.36 -2.42 16 20 C 0.11 1.26 6.69 -39.23 -0.26 1.00 16 21 O -0.32 -3.20 10.14 -19.65 -0.20 -3.40 16 22 C 0.07 0.58 4.03 37.16 0.15 0.73 16 23 C -0.14 -0.68 6.07 -27.88 -0.17 -0.85 16 24 C 0.52 3.27 8.10 -10.99 -0.09 3.18 16 25 N -0.85 -2.09 8.87 31.22 0.28 -1.81 16 26 O -0.54 -5.94 16.82 5.55 0.09 -5.85 16 27 C -0.13 -1.58 9.98 -39.46 -0.39 -1.97 16 28 C -0.08 -1.11 8.69 -39.41 -0.34 -1.45 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.04 0.98 7.75 -51.93 -0.40 0.57 16 31 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.33 4.63 9.06 -39.29 -0.36 4.28 16 35 H 0.35 5.76 8.58 -39.30 -0.34 5.43 16 36 H 0.41 4.25 8.82 -40.82 -0.36 3.89 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.13 1.25 6.29 -52.49 -0.33 0.92 16 39 H 0.07 0.58 7.62 -51.93 -0.40 0.19 16 40 H 0.07 0.62 7.62 -51.93 -0.40 0.22 16 41 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.40 -0.26 8.83 -40.82 -0.36 -0.62 16 44 H 0.40 0.80 8.93 -40.82 -0.36 0.43 16 45 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.14 2.05 6.22 -52.48 -0.33 1.72 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -36.45 391.31 -8.14 -44.59 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.55 Total: 9.84 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -3.35 Total: -8.91 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.91 Total: -49.63 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.03 Total: -18.54 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.45 -8.14 -44.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118123128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.400 kcal (2) G-P(sol) polarization free energy of solvation -36.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds